Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia
Genomic DNA of blueberry red ringspot virus (genus Soymovirus , family Caulimoviridae ) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (OR...
Gespeichert in:
| Veröffentlicht in: | Archives of virology 2011-10, Vol.156 (10), p.1901-1903 |
|---|---|
| Hauptverfasser: | , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 1903 |
|---|---|
| container_issue | 10 |
| container_start_page | 1901 |
| container_title | Archives of virology |
| container_volume | 156 |
| creator | Petrzik, Karel Přibylová, Jaroslava Pleško, Irena Mavrič Špak, Josef |
| description | Genomic DNA of blueberry red ringspot virus (genus
Soymovirus
, family
Caulimoviridae
) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (ORFs) longer than 100 amino acids. The European isolates are 90% to 99% identical in aa sequences of distinct proteins. In contrast to the American New Jersey isolate, in-frame initiation codons have been found upstream from AUG codons of ORFs I, IV and V in the European isolates. These and other differences resulted in a longer capsid protein, reverse transcriptase, movement protein and protein the encoded by ORF VII and reduced (75.4% to 93.7%) amino acid identity with corresponding proteins of the New Jersey isolate. |
| doi_str_mv | 10.1007/s00705-011-1077-x |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_926907827</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2469944321</sourcerecordid><originalsourceid>FETCH-LOGICAL-c432t-fbd51e188b3d3bba6745ae9c11fd13cd0fa05c0fb4eedf9937eb0deda68683863</originalsourceid><addsrcrecordid>eNqFkV1rFDEUhgdR7Fr9Ad5IEES9GD2ZzCSZy7LYKhQEP66HfJy0KZnJmMyUrb_eLLtaEMSbhITnfLw8VfWcwjsKIN7nckBXA6U1BSHq3YNqQ1vW1FL08mG1AQZtLTnIk-pJzjcA5YN1j6uThoqetwCbareN4xxwQXKFUxyRZPyx4mQwk-iIDitqTOmOJLQk-ekqz3Ehtz6tmbzZqjX4MZaXtwrfEp9jUEupdCmOZLlGsv2J5pp8wXnVwRuiJku-hniLk1dPq0dOhYzPjvdp9f38w7ftx_ry88Wn7dllbUqQpXbadhSplJpZprXiou0U9oZSZykzFpyCzoDTLaJ1fc8EarBoFZdcMsnZafX60HdOsSTLyzD6bDAENWFc89A3vAchG_FfUvatpJx3XSFf_kXexDVNJcYeanrOgRWIHiCTYs4J3TAnP6p0N1AY9vqGg76h6Bv2-oZdqXlxbLzqEe2fit--CvDqCKhsVHBJTcbne67tRNmxLVxz4PK8t4bpfsN_T_8F7XG0hA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>894296603</pqid></control><display><type>article</type><title>Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia</title><source>MEDLINE</source><source>Springer Nature - Complete Springer Journals</source><creator>Petrzik, Karel ; Přibylová, Jaroslava ; Pleško, Irena Mavrič ; Špak, Josef</creator><creatorcontrib>Petrzik, Karel ; Přibylová, Jaroslava ; Pleško, Irena Mavrič ; Špak, Josef</creatorcontrib><description>Genomic DNA of blueberry red ringspot virus (genus
Soymovirus
, family
Caulimoviridae
) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (ORFs) longer than 100 amino acids. The European isolates are 90% to 99% identical in aa sequences of distinct proteins. In contrast to the American New Jersey isolate, in-frame initiation codons have been found upstream from AUG codons of ORFs I, IV and V in the European isolates. These and other differences resulted in a longer capsid protein, reverse transcriptase, movement protein and protein the encoded by ORF VII and reduced (75.4% to 93.7%) amino acid identity with corresponding proteins of the New Jersey isolate.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-011-1077-x</identifier><identifier>PMID: 21796400</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Amino acids ; Annotated Sequence Record ; Base Sequence ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Blueberry Plants - virology ; Blueberry red ringspot virus ; Caulimoviridae - genetics ; Caulimoviridae - isolation & purification ; Cultivars ; Czech Republic ; Fundamental and applied biological sciences. Psychology ; Genes ; Genome, Viral ; Genomes ; Infectious Diseases ; Medical Microbiology ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Phytopathology. Animal pests. Plant and forest protection ; Plant Diseases - virology ; Plant viruses and viroids ; Proteins ; Slovenia ; Vaccinium ; Viral Proteins - genetics ; Virology</subject><ispartof>Archives of virology, 2011-10, Vol.156 (10), p.1901-1903</ispartof><rights>Springer-Verlag 2011</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c432t-fbd51e188b3d3bba6745ae9c11fd13cd0fa05c0fb4eedf9937eb0deda68683863</citedby><cites>FETCH-LOGICAL-c432t-fbd51e188b3d3bba6745ae9c11fd13cd0fa05c0fb4eedf9937eb0deda68683863</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-011-1077-x$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-011-1077-x$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24578164$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21796400$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Petrzik, Karel</creatorcontrib><creatorcontrib>Přibylová, Jaroslava</creatorcontrib><creatorcontrib>Pleško, Irena Mavrič</creatorcontrib><creatorcontrib>Špak, Josef</creatorcontrib><title>Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Genomic DNA of blueberry red ringspot virus (genus
Soymovirus
, family
Caulimoviridae
) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (ORFs) longer than 100 amino acids. The European isolates are 90% to 99% identical in aa sequences of distinct proteins. In contrast to the American New Jersey isolate, in-frame initiation codons have been found upstream from AUG codons of ORFs I, IV and V in the European isolates. These and other differences resulted in a longer capsid protein, reverse transcriptase, movement protein and protein the encoded by ORF VII and reduced (75.4% to 93.7%) amino acid identity with corresponding proteins of the New Jersey isolate.</description><subject>Amino acids</subject><subject>Annotated Sequence Record</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Blueberry Plants - virology</subject><subject>Blueberry red ringspot virus</subject><subject>Caulimoviridae - genetics</subject><subject>Caulimoviridae - isolation & purification</subject><subject>Cultivars</subject><subject>Czech Republic</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Phytopathology. Animal pests. Plant and forest protection</subject><subject>Plant Diseases - virology</subject><subject>Plant viruses and viroids</subject><subject>Proteins</subject><subject>Slovenia</subject><subject>Vaccinium</subject><subject>Viral Proteins - genetics</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkV1rFDEUhgdR7Fr9Ad5IEES9GD2ZzCSZy7LYKhQEP66HfJy0KZnJmMyUrb_eLLtaEMSbhITnfLw8VfWcwjsKIN7nckBXA6U1BSHq3YNqQ1vW1FL08mG1AQZtLTnIk-pJzjcA5YN1j6uThoqetwCbareN4xxwQXKFUxyRZPyx4mQwk-iIDitqTOmOJLQk-ekqz3Ehtz6tmbzZqjX4MZaXtwrfEp9jUEupdCmOZLlGsv2J5pp8wXnVwRuiJku-hniLk1dPq0dOhYzPjvdp9f38w7ftx_ry88Wn7dllbUqQpXbadhSplJpZprXiou0U9oZSZykzFpyCzoDTLaJ1fc8EarBoFZdcMsnZafX60HdOsSTLyzD6bDAENWFc89A3vAchG_FfUvatpJx3XSFf_kXexDVNJcYeanrOgRWIHiCTYs4J3TAnP6p0N1AY9vqGg76h6Bv2-oZdqXlxbLzqEe2fit--CvDqCKhsVHBJTcbne67tRNmxLVxz4PK8t4bpfsN_T_8F7XG0hA</recordid><startdate>20111001</startdate><enddate>20111001</enddate><creator>Petrzik, Karel</creator><creator>Přibylová, Jaroslava</creator><creator>Pleško, Irena Mavrič</creator><creator>Špak, Josef</creator><general>Springer Vienna</general><general>Springer</general><general>Springer Nature B.V</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20111001</creationdate><title>Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia</title><author>Petrzik, Karel ; Přibylová, Jaroslava ; Pleško, Irena Mavrič ; Špak, Josef</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c432t-fbd51e188b3d3bba6745ae9c11fd13cd0fa05c0fb4eedf9937eb0deda68683863</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Amino acids</topic><topic>Annotated Sequence Record</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Blueberry Plants - virology</topic><topic>Blueberry red ringspot virus</topic><topic>Caulimoviridae - genetics</topic><topic>Caulimoviridae - isolation & purification</topic><topic>Cultivars</topic><topic>Czech Republic</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Phytopathology. Animal pests. Plant and forest protection</topic><topic>Plant Diseases - virology</topic><topic>Plant viruses and viroids</topic><topic>Proteins</topic><topic>Slovenia</topic><topic>Vaccinium</topic><topic>Viral Proteins - genetics</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Petrzik, Karel</creatorcontrib><creatorcontrib>Přibylová, Jaroslava</creatorcontrib><creatorcontrib>Pleško, Irena Mavrič</creatorcontrib><creatorcontrib>Špak, Josef</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Petrzik, Karel</au><au>Přibylová, Jaroslava</au><au>Pleško, Irena Mavrič</au><au>Špak, Josef</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2011-10-01</date><risdate>2011</risdate><volume>156</volume><issue>10</issue><spage>1901</spage><epage>1903</epage><pages>1901-1903</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Genomic DNA of blueberry red ringspot virus (genus
Soymovirus
, family
Caulimoviridae
) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (ORFs) longer than 100 amino acids. The European isolates are 90% to 99% identical in aa sequences of distinct proteins. In contrast to the American New Jersey isolate, in-frame initiation codons have been found upstream from AUG codons of ORFs I, IV and V in the European isolates. These and other differences resulted in a longer capsid protein, reverse transcriptase, movement protein and protein the encoded by ORF VII and reduced (75.4% to 93.7%) amino acid identity with corresponding proteins of the New Jersey isolate.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>21796400</pmid><doi>10.1007/s00705-011-1077-x</doi><tpages>3</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0304-8608 |
| ispartof | Archives of virology, 2011-10, Vol.156 (10), p.1901-1903 |
| issn | 0304-8608 1432-8798 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_926907827 |
| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Amino acids Annotated Sequence Record Base Sequence Biological and medical sciences Biomedical and Life Sciences Biomedicine Blueberry Plants - virology Blueberry red ringspot virus Caulimoviridae - genetics Caulimoviridae - isolation & purification Cultivars Czech Republic Fundamental and applied biological sciences. Psychology Genes Genome, Viral Genomes Infectious Diseases Medical Microbiology Microbiology Miscellaneous Molecular Sequence Data Phytopathology. Animal pests. Plant and forest protection Plant Diseases - virology Plant viruses and viroids Proteins Slovenia Vaccinium Viral Proteins - genetics Virology |
| title | Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-21T00%3A02%3A38IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Complete%20genome%20sequences%20of%20blueberry%20red%20ringspot%20virus%20(Caulimoviridae)%20isolates%20from%20the%20Czech%20Republic%20and%20Slovenia&rft.jtitle=Archives%20of%20virology&rft.au=Petrzik,%20Karel&rft.date=2011-10-01&rft.volume=156&rft.issue=10&rft.spage=1901&rft.epage=1903&rft.pages=1901-1903&rft.issn=0304-8608&rft.eissn=1432-8798&rft_id=info:doi/10.1007/s00705-011-1077-x&rft_dat=%3Cproquest_cross%3E2469944321%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=894296603&rft_id=info:pmid/21796400&rfr_iscdi=true |