Complete genomic sequence of a T4-like bacteriophage, phiAS4, infecting Aeromonas salmonicida subsp. salmonicida
A newly identified virulent phage (named phiAS4) infecting Aeromonas salmonicida subsp. salmonicida was isolated from river water in Korea. Morphological analysis of phiAS4 by transmission electron microscopy revealed that it belonged to the family Myoviridae . The genome of phiAS4 comprised a linea...
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| Veröffentlicht in: | Archives of virology 2012-02, Vol.157 (2), p.391-395 |
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| creator | Kim, J. H. Son, J. S. Choi, Y. J. Choresca, C. H. Shin, S. P. Han, J. E. Jun, J. W. Park, S. C. |
| description | A newly identified virulent phage (named phiAS4) infecting
Aeromonas salmonicida
subsp.
salmonicida
was isolated from river water in Korea. Morphological analysis of phiAS4 by transmission electron microscopy revealed that it belonged to the family
Myoviridae
. The genome of phiAS4 comprised a linear double-stranded DNA of 163,875 bp with a G + C content of 41.3%, and genomic analysis revealed 271 putative ORFs, 67 putative promoters, 25 putative terminator regions, and 16 tRNA-encoding genes. Most of the ORFs of phiAS4 showed a high degree of similarity to those of
Aeromonas
phage 25, which belongs to the T4-like group. Moreover, the comparison of the genome of phiAS4 with those of its relatives demonstrated that phage phiAS4 is closely related to members of the T4-like group and can be classified as a new member of the T4-like phages infecting bacteria of the family
Aeromonadaceae
. |
| doi_str_mv | 10.1007/s00705-011-1175-9 |
| format | Article |
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Aeromonas salmonicida
subsp.
salmonicida
was isolated from river water in Korea. Morphological analysis of phiAS4 by transmission electron microscopy revealed that it belonged to the family
Myoviridae
. The genome of phiAS4 comprised a linear double-stranded DNA of 163,875 bp with a G + C content of 41.3%, and genomic analysis revealed 271 putative ORFs, 67 putative promoters, 25 putative terminator regions, and 16 tRNA-encoding genes. Most of the ORFs of phiAS4 showed a high degree of similarity to those of
Aeromonas
phage 25, which belongs to the T4-like group. Moreover, the comparison of the genome of phiAS4 with those of its relatives demonstrated that phage phiAS4 is closely related to members of the T4-like group and can be classified as a new member of the T4-like phages infecting bacteria of the family
Aeromonadaceae
.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-011-1175-9</identifier><identifier>PMID: 22116495</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Aeromonas ; Aeromonas salmonicida ; Aeromonas salmonicida - virology ; Agricultural biotechnology ; Annotated Sequence Record ; Bacteria ; Bacteriology ; Bacteriophages - genetics ; Bacteriophages - isolation & purification ; Bacteriophages - physiology ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Fundamental and applied biological sciences. Psychology ; Genome, Viral ; Genomes ; Genomics ; Infectious Diseases ; Medical Microbiology ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Myoviridae ; Myoviridae - genetics ; Myoviridae - isolation & purification ; Myoviridae - physiology ; Open Reading Frames ; Pathogens ; Republic of Korea ; Rivers - virology ; Transfer RNA ; Veterinary medicine ; Virology ; Virulence</subject><ispartof>Archives of virology, 2012-02, Vol.157 (2), p.391-395</ispartof><rights>Springer-Verlag 2011</rights><rights>2015 INIST-CNRS</rights><rights>Springer-Verlag 2012</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c432t-83cf6446d1bf2f4ee97b0898871cac2f95abc8f125dc67320527a80331e774bb3</citedby><cites>FETCH-LOGICAL-c432t-83cf6446d1bf2f4ee97b0898871cac2f95abc8f125dc67320527a80331e774bb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-011-1175-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-011-1175-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25466065$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22116495$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, J. H.</creatorcontrib><creatorcontrib>Son, J. S.</creatorcontrib><creatorcontrib>Choi, Y. J.</creatorcontrib><creatorcontrib>Choresca, C. H.</creatorcontrib><creatorcontrib>Shin, S. P.</creatorcontrib><creatorcontrib>Han, J. E.</creatorcontrib><creatorcontrib>Jun, J. W.</creatorcontrib><creatorcontrib>Park, S. C.</creatorcontrib><title>Complete genomic sequence of a T4-like bacteriophage, phiAS4, infecting Aeromonas salmonicida subsp. salmonicida</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>A newly identified virulent phage (named phiAS4) infecting
Aeromonas salmonicida
subsp.
salmonicida
was isolated from river water in Korea. Morphological analysis of phiAS4 by transmission electron microscopy revealed that it belonged to the family
Myoviridae
. The genome of phiAS4 comprised a linear double-stranded DNA of 163,875 bp with a G + C content of 41.3%, and genomic analysis revealed 271 putative ORFs, 67 putative promoters, 25 putative terminator regions, and 16 tRNA-encoding genes. Most of the ORFs of phiAS4 showed a high degree of similarity to those of
Aeromonas
phage 25, which belongs to the T4-like group. Moreover, the comparison of the genome of phiAS4 with those of its relatives demonstrated that phage phiAS4 is closely related to members of the T4-like group and can be classified as a new member of the T4-like phages infecting bacteria of the family
Aeromonadaceae
.</description><subject>Aeromonas</subject><subject>Aeromonas salmonicida</subject><subject>Aeromonas salmonicida - virology</subject><subject>Agricultural biotechnology</subject><subject>Annotated Sequence Record</subject><subject>Bacteria</subject><subject>Bacteriology</subject><subject>Bacteriophages - genetics</subject><subject>Bacteriophages - isolation & purification</subject><subject>Bacteriophages - physiology</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Myoviridae</subject><subject>Myoviridae - genetics</subject><subject>Myoviridae - isolation & purification</subject><subject>Myoviridae - physiology</subject><subject>Open Reading Frames</subject><subject>Pathogens</subject><subject>Republic of Korea</subject><subject>Rivers - virology</subject><subject>Transfer RNA</subject><subject>Veterinary medicine</subject><subject>Virology</subject><subject>Virulence</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkV1rHCEUhqW0NJu0P6A3RQqlN5lUHT8vl6UfgUAvklyL4x43pjPjVGcu8u_jstumFEpuVI7POfryIPSOkgtKiPpc6kJEQyhtKFWiMS_QivKWNVoZ_RKtSEt4oyXRJ-i0lHtCaqEVr9EJY5RKbsQKTZs0TD3MgHcwpiF6XODXAqMHnAJ2-IY3ffwJuHN-hhzTdOd2cI6nu7i-5uc4jgH8HMcdXkNOQxpdwcX19RB93Dpclq5MF3-X3qBXwfUF3h73M3T79cvN5ntz9ePb5WZ91fgaYG5064PkXG5pF1jgAEZ1RButFfXOs2CE67wOlImtl6plRDDlNGlbCkrxrmvP0KfD3CmnGqjMdojFQ9-7EdJSrGFSGym0fJ6khjGhqarkh3_I-7TkscaokFaSKrmH6AHyOZWSIdgpx8HlB0uJ3WuzB222arN7bdbUnvfHwUs3wPZPx29PFfh4BFzxrg_ZjT6WJ05wKYncc-zAlXo17iA__fD_rz8CAF-uZQ</recordid><startdate>20120201</startdate><enddate>20120201</enddate><creator>Kim, J. H.</creator><creator>Son, J. S.</creator><creator>Choi, Y. J.</creator><creator>Choresca, C. H.</creator><creator>Shin, S. P.</creator><creator>Han, J. E.</creator><creator>Jun, J. W.</creator><creator>Park, S. C.</creator><general>Springer Vienna</general><general>Springer</general><general>Springer Nature B.V</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PHGZM</scope><scope>PHGZT</scope><scope>PJZUB</scope><scope>PKEHL</scope><scope>PPXIY</scope><scope>PQEST</scope><scope>PQGLB</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>20120201</creationdate><title>Complete genomic sequence of a T4-like bacteriophage, phiAS4, infecting Aeromonas salmonicida subsp. salmonicida</title><author>Kim, J. H. ; Son, J. S. ; Choi, Y. J. ; Choresca, C. H. ; Shin, S. P. ; Han, J. E. ; Jun, J. W. ; Park, S. C.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c432t-83cf6446d1bf2f4ee97b0898871cac2f95abc8f125dc67320527a80331e774bb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Aeromonas</topic><topic>Aeromonas salmonicida</topic><topic>Aeromonas salmonicida - virology</topic><topic>Agricultural biotechnology</topic><topic>Annotated Sequence Record</topic><topic>Bacteria</topic><topic>Bacteriology</topic><topic>Bacteriophages - genetics</topic><topic>Bacteriophages - isolation & purification</topic><topic>Bacteriophages - physiology</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Myoviridae</topic><topic>Myoviridae - genetics</topic><topic>Myoviridae - isolation & purification</topic><topic>Myoviridae - physiology</topic><topic>Open Reading Frames</topic><topic>Pathogens</topic><topic>Republic of Korea</topic><topic>Rivers - virology</topic><topic>Transfer RNA</topic><topic>Veterinary medicine</topic><topic>Virology</topic><topic>Virulence</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, J. H.</creatorcontrib><creatorcontrib>Son, J. S.</creatorcontrib><creatorcontrib>Choi, Y. J.</creatorcontrib><creatorcontrib>Choresca, C. H.</creatorcontrib><creatorcontrib>Shin, S. P.</creatorcontrib><creatorcontrib>Han, J. E.</creatorcontrib><creatorcontrib>Jun, J. 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H.</au><au>Son, J. S.</au><au>Choi, Y. J.</au><au>Choresca, C. H.</au><au>Shin, S. P.</au><au>Han, J. E.</au><au>Jun, J. W.</au><au>Park, S. C.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete genomic sequence of a T4-like bacteriophage, phiAS4, infecting Aeromonas salmonicida subsp. salmonicida</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2012-02-01</date><risdate>2012</risdate><volume>157</volume><issue>2</issue><spage>391</spage><epage>395</epage><pages>391-395</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>A newly identified virulent phage (named phiAS4) infecting
Aeromonas salmonicida
subsp.
salmonicida
was isolated from river water in Korea. Morphological analysis of phiAS4 by transmission electron microscopy revealed that it belonged to the family
Myoviridae
. The genome of phiAS4 comprised a linear double-stranded DNA of 163,875 bp with a G + C content of 41.3%, and genomic analysis revealed 271 putative ORFs, 67 putative promoters, 25 putative terminator regions, and 16 tRNA-encoding genes. Most of the ORFs of phiAS4 showed a high degree of similarity to those of
Aeromonas
phage 25, which belongs to the T4-like group. Moreover, the comparison of the genome of phiAS4 with those of its relatives demonstrated that phage phiAS4 is closely related to members of the T4-like group and can be classified as a new member of the T4-like phages infecting bacteria of the family
Aeromonadaceae
.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>22116495</pmid><doi>10.1007/s00705-011-1175-9</doi><tpages>5</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0304-8608 |
| ispartof | Archives of virology, 2012-02, Vol.157 (2), p.391-395 |
| issn | 0304-8608 1432-8798 |
| language | eng |
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| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Aeromonas Aeromonas salmonicida Aeromonas salmonicida - virology Agricultural biotechnology Annotated Sequence Record Bacteria Bacteriology Bacteriophages - genetics Bacteriophages - isolation & purification Bacteriophages - physiology Biological and medical sciences Biomedical and Life Sciences Biomedicine Fundamental and applied biological sciences. Psychology Genome, Viral Genomes Genomics Infectious Diseases Medical Microbiology Microbiology Miscellaneous Molecular Sequence Data Myoviridae Myoviridae - genetics Myoviridae - isolation & purification Myoviridae - physiology Open Reading Frames Pathogens Republic of Korea Rivers - virology Transfer RNA Veterinary medicine Virology Virulence |
| title | Complete genomic sequence of a T4-like bacteriophage, phiAS4, infecting Aeromonas salmonicida subsp. salmonicida |
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