Effect of ester chemical structure and peptide bond conformation in fragmentation pathways of differently metal cationized cyclodepsipeptides
Fragmentation behavior of two classes of cyclodepsipeptides, isariins and isaridins, obtained from the fungus Isaria, was investigated in the presence of different metal ions using multistage tandem mass spectrometry (MS(n)) with collision induced dissociation (CID) and validated by NMR spectroscopy...
Gespeichert in:
Veröffentlicht in: | Organic & biomolecular chemistry 2011-09, Vol.9 (18), p.6234-6245 |
---|---|
Hauptverfasser: | , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 6245 |
---|---|
container_issue | 18 |
container_start_page | 6234 |
container_title | Organic & biomolecular chemistry |
container_volume | 9 |
creator | Banerjee, Raja Sudarslal, S Ranganayaki, R S Raghothama, S |
description | Fragmentation behavior of two classes of cyclodepsipeptides, isariins and isaridins, obtained from the fungus Isaria, was investigated in the presence of different metal ions using multistage tandem mass spectrometry (MS(n)) with collision induced dissociation (CID) and validated by NMR spectroscopy. During MS(n) process, both protonated and metal-cationized isariins generated product ions belonging to the identical 'b-ion' series, exhibiting initial backbone cleavage explicitly at the β-ester bond. Fragmentation behavior for the protonated and metal-cationized acyclic methyl ester derivative of isariins was very similar. On the contrary, isaridins during fragmentation produced ions belonging to the 'b' or/and the 'y' ion series depending on the nature of interacting metal ions, due to initial backbone cleavages at the α-ester linkage or/and at a specific amide linkage. Interestingly, independent of the nature of the interacting metal ions, the product ions formed from the acyclic methyl ester derivative of isaridins belonged only to the 'y-type'. Complementary NMR data showed that, while all metal ions were located around the β-ester group of isariins, the metal ion interacting sites varied across the backbone for isaridins. Combined MS and NMR data suggest that the different behavior in sequence specific charge-driven fragmentation of isariins and isaridins is predetermined because of the constituent β-hydroxy acid residue in isariins and the cis peptide bond in isaridins. |
doi_str_mv | 10.1039/c1ob05392b |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_926894204</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>926894204</sourcerecordid><originalsourceid>FETCH-LOGICAL-c318t-3f7e9807102d8cf905e196f7aefbadc881294347449d5cdb52c95cf05e42e0563</originalsourceid><addsrcrecordid>eNqFkctKxDAUhoMoznjZ-ACSnSCMJmnaJksZvMGAG12XNDlxIm1TkxQZ38F3tuOM49LVuX18cPgROqPkipJMXmvqa5JnktV7aEp5Wc7W0_6uZ2SCjmJ8I4TKsuCHaMKoYEXG5BR93VoLOmFvMcQEAesltE6rBscUBp2GAFh1BvfQJ2cA134ctO-sD61KznfYddgG9dpClzaLXqXlh1rFtdO4UR_GU7PCLaRRq38g9wmjZqUbb6CPbmuPJ-jAqibC6bYeo5e72-f5w2zxdP84v1nMdEZFmmW2BClISQkzQltJcqCysKUCWyujhaBM8oyXnEuTa1PnTMtc2xHjDEheZMfoYuPtg38fxser1kUNTaM68EOsJCuE5Izwf0kh8rxgXKydlxtSBx9jAFv1wbUqrCpKqnVO1V9OI3y-1Q51C2aH_gaTfQNhy5HE</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>885562486</pqid></control><display><type>article</type><title>Effect of ester chemical structure and peptide bond conformation in fragmentation pathways of differently metal cationized cyclodepsipeptides</title><source>MEDLINE</source><source>Royal Society Of Chemistry Journals 2008-</source><source>Alma/SFX Local Collection</source><creator>Banerjee, Raja ; Sudarslal, S ; Ranganayaki, R S ; Raghothama, S</creator><creatorcontrib>Banerjee, Raja ; Sudarslal, S ; Ranganayaki, R S ; Raghothama, S</creatorcontrib><description>Fragmentation behavior of two classes of cyclodepsipeptides, isariins and isaridins, obtained from the fungus Isaria, was investigated in the presence of different metal ions using multistage tandem mass spectrometry (MS(n)) with collision induced dissociation (CID) and validated by NMR spectroscopy. During MS(n) process, both protonated and metal-cationized isariins generated product ions belonging to the identical 'b-ion' series, exhibiting initial backbone cleavage explicitly at the β-ester bond. Fragmentation behavior for the protonated and metal-cationized acyclic methyl ester derivative of isariins was very similar. On the contrary, isaridins during fragmentation produced ions belonging to the 'b' or/and the 'y' ion series depending on the nature of interacting metal ions, due to initial backbone cleavages at the α-ester linkage or/and at a specific amide linkage. Interestingly, independent of the nature of the interacting metal ions, the product ions formed from the acyclic methyl ester derivative of isaridins belonged only to the 'y-type'. Complementary NMR data showed that, while all metal ions were located around the β-ester group of isariins, the metal ion interacting sites varied across the backbone for isaridins. Combined MS and NMR data suggest that the different behavior in sequence specific charge-driven fragmentation of isariins and isaridins is predetermined because of the constituent β-hydroxy acid residue in isariins and the cis peptide bond in isaridins.</description><identifier>ISSN: 1477-0520</identifier><identifier>EISSN: 1477-0539</identifier><identifier>DOI: 10.1039/c1ob05392b</identifier><identifier>PMID: 21826329</identifier><language>eng</language><publisher>England</publisher><subject>Cations - chemistry ; Depsipeptides - chemistry ; Hypocreales - chemistry ; Metals - chemistry ; Protein Structure, Secondary ; Protons ; Tandem Mass Spectrometry - methods</subject><ispartof>Organic & biomolecular chemistry, 2011-09, Vol.9 (18), p.6234-6245</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c318t-3f7e9807102d8cf905e196f7aefbadc881294347449d5cdb52c95cf05e42e0563</citedby><cites>FETCH-LOGICAL-c318t-3f7e9807102d8cf905e196f7aefbadc881294347449d5cdb52c95cf05e42e0563</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21826329$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Banerjee, Raja</creatorcontrib><creatorcontrib>Sudarslal, S</creatorcontrib><creatorcontrib>Ranganayaki, R S</creatorcontrib><creatorcontrib>Raghothama, S</creatorcontrib><title>Effect of ester chemical structure and peptide bond conformation in fragmentation pathways of differently metal cationized cyclodepsipeptides</title><title>Organic & biomolecular chemistry</title><addtitle>Org Biomol Chem</addtitle><description>Fragmentation behavior of two classes of cyclodepsipeptides, isariins and isaridins, obtained from the fungus Isaria, was investigated in the presence of different metal ions using multistage tandem mass spectrometry (MS(n)) with collision induced dissociation (CID) and validated by NMR spectroscopy. During MS(n) process, both protonated and metal-cationized isariins generated product ions belonging to the identical 'b-ion' series, exhibiting initial backbone cleavage explicitly at the β-ester bond. Fragmentation behavior for the protonated and metal-cationized acyclic methyl ester derivative of isariins was very similar. On the contrary, isaridins during fragmentation produced ions belonging to the 'b' or/and the 'y' ion series depending on the nature of interacting metal ions, due to initial backbone cleavages at the α-ester linkage or/and at a specific amide linkage. Interestingly, independent of the nature of the interacting metal ions, the product ions formed from the acyclic methyl ester derivative of isaridins belonged only to the 'y-type'. Complementary NMR data showed that, while all metal ions were located around the β-ester group of isariins, the metal ion interacting sites varied across the backbone for isaridins. Combined MS and NMR data suggest that the different behavior in sequence specific charge-driven fragmentation of isariins and isaridins is predetermined because of the constituent β-hydroxy acid residue in isariins and the cis peptide bond in isaridins.</description><subject>Cations - chemistry</subject><subject>Depsipeptides - chemistry</subject><subject>Hypocreales - chemistry</subject><subject>Metals - chemistry</subject><subject>Protein Structure, Secondary</subject><subject>Protons</subject><subject>Tandem Mass Spectrometry - methods</subject><issn>1477-0520</issn><issn>1477-0539</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkctKxDAUhoMoznjZ-ACSnSCMJmnaJksZvMGAG12XNDlxIm1TkxQZ38F3tuOM49LVuX18cPgROqPkipJMXmvqa5JnktV7aEp5Wc7W0_6uZ2SCjmJ8I4TKsuCHaMKoYEXG5BR93VoLOmFvMcQEAesltE6rBscUBp2GAFh1BvfQJ2cA134ctO-sD61KznfYddgG9dpClzaLXqXlh1rFtdO4UR_GU7PCLaRRq38g9wmjZqUbb6CPbmuPJ-jAqibC6bYeo5e72-f5w2zxdP84v1nMdEZFmmW2BClISQkzQltJcqCysKUCWyujhaBM8oyXnEuTa1PnTMtc2xHjDEheZMfoYuPtg38fxser1kUNTaM68EOsJCuE5Izwf0kh8rxgXKydlxtSBx9jAFv1wbUqrCpKqnVO1V9OI3y-1Q51C2aH_gaTfQNhy5HE</recordid><startdate>20110921</startdate><enddate>20110921</enddate><creator>Banerjee, Raja</creator><creator>Sudarslal, S</creator><creator>Ranganayaki, R S</creator><creator>Raghothama, S</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>M7N</scope></search><sort><creationdate>20110921</creationdate><title>Effect of ester chemical structure and peptide bond conformation in fragmentation pathways of differently metal cationized cyclodepsipeptides</title><author>Banerjee, Raja ; Sudarslal, S ; Ranganayaki, R S ; Raghothama, S</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c318t-3f7e9807102d8cf905e196f7aefbadc881294347449d5cdb52c95cf05e42e0563</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Cations - chemistry</topic><topic>Depsipeptides - chemistry</topic><topic>Hypocreales - chemistry</topic><topic>Metals - chemistry</topic><topic>Protein Structure, Secondary</topic><topic>Protons</topic><topic>Tandem Mass Spectrometry - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Banerjee, Raja</creatorcontrib><creatorcontrib>Sudarslal, S</creatorcontrib><creatorcontrib>Ranganayaki, R S</creatorcontrib><creatorcontrib>Raghothama, S</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><jtitle>Organic & biomolecular chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Banerjee, Raja</au><au>Sudarslal, S</au><au>Ranganayaki, R S</au><au>Raghothama, S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Effect of ester chemical structure and peptide bond conformation in fragmentation pathways of differently metal cationized cyclodepsipeptides</atitle><jtitle>Organic & biomolecular chemistry</jtitle><addtitle>Org Biomol Chem</addtitle><date>2011-09-21</date><risdate>2011</risdate><volume>9</volume><issue>18</issue><spage>6234</spage><epage>6245</epage><pages>6234-6245</pages><issn>1477-0520</issn><eissn>1477-0539</eissn><abstract>Fragmentation behavior of two classes of cyclodepsipeptides, isariins and isaridins, obtained from the fungus Isaria, was investigated in the presence of different metal ions using multistage tandem mass spectrometry (MS(n)) with collision induced dissociation (CID) and validated by NMR spectroscopy. During MS(n) process, both protonated and metal-cationized isariins generated product ions belonging to the identical 'b-ion' series, exhibiting initial backbone cleavage explicitly at the β-ester bond. Fragmentation behavior for the protonated and metal-cationized acyclic methyl ester derivative of isariins was very similar. On the contrary, isaridins during fragmentation produced ions belonging to the 'b' or/and the 'y' ion series depending on the nature of interacting metal ions, due to initial backbone cleavages at the α-ester linkage or/and at a specific amide linkage. Interestingly, independent of the nature of the interacting metal ions, the product ions formed from the acyclic methyl ester derivative of isaridins belonged only to the 'y-type'. Complementary NMR data showed that, while all metal ions were located around the β-ester group of isariins, the metal ion interacting sites varied across the backbone for isaridins. Combined MS and NMR data suggest that the different behavior in sequence specific charge-driven fragmentation of isariins and isaridins is predetermined because of the constituent β-hydroxy acid residue in isariins and the cis peptide bond in isaridins.</abstract><cop>England</cop><pmid>21826329</pmid><doi>10.1039/c1ob05392b</doi><tpages>12</tpages></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1477-0520 |
ispartof | Organic & biomolecular chemistry, 2011-09, Vol.9 (18), p.6234-6245 |
issn | 1477-0520 1477-0539 |
language | eng |
recordid | cdi_proquest_miscellaneous_926894204 |
source | MEDLINE; Royal Society Of Chemistry Journals 2008-; Alma/SFX Local Collection |
subjects | Cations - chemistry Depsipeptides - chemistry Hypocreales - chemistry Metals - chemistry Protein Structure, Secondary Protons Tandem Mass Spectrometry - methods |
title | Effect of ester chemical structure and peptide bond conformation in fragmentation pathways of differently metal cationized cyclodepsipeptides |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-22T21%3A17%3A20IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Effect%20of%20ester%20chemical%20structure%20and%20peptide%20bond%20conformation%20in%20fragmentation%20pathways%20of%20differently%20metal%20cationized%20cyclodepsipeptides&rft.jtitle=Organic%20&%20biomolecular%20chemistry&rft.au=Banerjee,%20Raja&rft.date=2011-09-21&rft.volume=9&rft.issue=18&rft.spage=6234&rft.epage=6245&rft.pages=6234-6245&rft.issn=1477-0520&rft.eissn=1477-0539&rft_id=info:doi/10.1039/c1ob05392b&rft_dat=%3Cproquest_cross%3E926894204%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=885562486&rft_id=info:pmid/21826329&rfr_iscdi=true |