Molecular genetic and chemotaxonomic characterization of the terrestrial cyanobacterium Nostoc commune and its neighboring species
Abstract The phylogeny of the terrestrial cyanobacterium Nostoc commune and its neighboring Nostoc species was studied using molecular genetic and chemotaxonomic approaches. At least eight genotypes of N. commune were characterized by the differences among 16S rRNA gene sequences and the petH gene e...
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| Veröffentlicht in: | FEMS microbiology ecology 2012-01, Vol.79 (1), p.34-45 |
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| creator | Arima, Hiromi Horiguchi, Noriomi Takaichi, Shinichi Kofuji, Rumiko Ishida, Ken-Ichiro Wada, Keishiro Sakamoto, Toshio |
| description | Abstract
The phylogeny of the terrestrial cyanobacterium Nostoc commune and its neighboring Nostoc species was studied using molecular genetic and chemotaxonomic approaches. At least eight genotypes of N. commune were characterized by the differences among 16S rRNA gene sequences and the petH gene encoding ferredoxin-NADP+ oxidoreductase and by random amplified polymorphic DNA analysis. The genotypes of N. commune were distributed in Japan without regional specificity. The nrtP gene encoding NrtP-type nitrate/nitrite permease was widely distributed in the genus Nostoc, suggesting that the occurrence of the nrtP gene can be one of the characteristic features that separate cyanobacteria into two groups. The wspA gene encoding a 36-kDa water stress protein was only found in N. commune and Nostoc verrucosum, suggesting that these Nostoc species that form massive colonies with extracellular polysaccharides can be exclusively characterized by the occurrence of the wspA gene. Fifteen species of Nostoc and Anabaena were investigated by comparing their carotenoid composition. Three groups with distinct patterns of carotenoids were related to the phylogenic tree constructed on the basis of 16S rRNA sequences. Nostoc commune and Nostoc punctiforme were clustered in one monophyletic group and characterized by the occurrence of nostoxanthin, canthaxanthin, and myxol glycosides. |
| doi_str_mv | 10.1111/j.1574-6941.2011.01195.x |
| format | Article |
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The phylogeny of the terrestrial cyanobacterium Nostoc commune and its neighboring Nostoc species was studied using molecular genetic and chemotaxonomic approaches. At least eight genotypes of N. commune were characterized by the differences among 16S rRNA gene sequences and the petH gene encoding ferredoxin-NADP+ oxidoreductase and by random amplified polymorphic DNA analysis. The genotypes of N. commune were distributed in Japan without regional specificity. The nrtP gene encoding NrtP-type nitrate/nitrite permease was widely distributed in the genus Nostoc, suggesting that the occurrence of the nrtP gene can be one of the characteristic features that separate cyanobacteria into two groups. The wspA gene encoding a 36-kDa water stress protein was only found in N. commune and Nostoc verrucosum, suggesting that these Nostoc species that form massive colonies with extracellular polysaccharides can be exclusively characterized by the occurrence of the wspA gene. Fifteen species of Nostoc and Anabaena were investigated by comparing their carotenoid composition. Three groups with distinct patterns of carotenoids were related to the phylogenic tree constructed on the basis of 16S rRNA sequences. Nostoc commune and Nostoc punctiforme were clustered in one monophyletic group and characterized by the occurrence of nostoxanthin, canthaxanthin, and myxol glycosides.</description><identifier>ISSN: 0168-6496</identifier><identifier>EISSN: 1574-6941</identifier><identifier>DOI: 10.1111/j.1574-6941.2011.01195.x</identifier><identifier>PMID: 22066798</identifier><identifier>CODEN: FMECEZ</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>Anabaena - genetics ; Anabaena - metabolism ; Anabaena - pathogenicity ; Anhydrobiosis ; Animal, plant and microbial ecology ; Bacteriology ; Base Sequence ; Biological and medical sciences ; Canthaxanthin - metabolism ; carotenoid ; Carotenoids ; Carotenoids - metabolism ; Ecology ; ferredoxin‐NADP+ oxidoreductase ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA ; Genetic Variation ; Genotypes ; Japan ; Microbial ecology ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; nitrate/nitrite transporter ; Nitrates - metabolism ; Nitrites - metabolism ; Nostoc commune - genetics ; Nostoc commune - metabolism ; Nostoc commune - pathogenicity ; Phylogeny ; random amplified polymorphic DNA ; RNA, Ribosomal, 16S ; Saccharides ; Water stress ; water stress protein ; Xanthophylls - metabolism</subject><ispartof>FEMS microbiology ecology, 2012-01, Vol.79 (1), p.34-45</ispartof><rights>2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved 2011</rights><rights>2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved</rights><rights>2015 INIST-CNRS</rights><rights>Copyright © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5865-c3018bdd1324afe9af61c8a0fe99f1fdd5a176cdd921d4798dfe04147c3311ca3</citedby><cites>FETCH-LOGICAL-c5865-c3018bdd1324afe9af61c8a0fe99f1fdd5a176cdd921d4798dfe04147c3311ca3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1574-6941.2011.01195.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1574-6941.2011.01195.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27923,27924,45573,45574</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25289936$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22066798$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Arima, Hiromi</creatorcontrib><creatorcontrib>Horiguchi, Noriomi</creatorcontrib><creatorcontrib>Takaichi, Shinichi</creatorcontrib><creatorcontrib>Kofuji, Rumiko</creatorcontrib><creatorcontrib>Ishida, Ken-Ichiro</creatorcontrib><creatorcontrib>Wada, Keishiro</creatorcontrib><creatorcontrib>Sakamoto, Toshio</creatorcontrib><title>Molecular genetic and chemotaxonomic characterization of the terrestrial cyanobacterium Nostoc commune and its neighboring species</title><title>FEMS microbiology ecology</title><addtitle>FEMS Microbiol Ecol</addtitle><description>Abstract
The phylogeny of the terrestrial cyanobacterium Nostoc commune and its neighboring Nostoc species was studied using molecular genetic and chemotaxonomic approaches. At least eight genotypes of N. commune were characterized by the differences among 16S rRNA gene sequences and the petH gene encoding ferredoxin-NADP+ oxidoreductase and by random amplified polymorphic DNA analysis. The genotypes of N. commune were distributed in Japan without regional specificity. The nrtP gene encoding NrtP-type nitrate/nitrite permease was widely distributed in the genus Nostoc, suggesting that the occurrence of the nrtP gene can be one of the characteristic features that separate cyanobacteria into two groups. The wspA gene encoding a 36-kDa water stress protein was only found in N. commune and Nostoc verrucosum, suggesting that these Nostoc species that form massive colonies with extracellular polysaccharides can be exclusively characterized by the occurrence of the wspA gene. Fifteen species of Nostoc and Anabaena were investigated by comparing their carotenoid composition. Three groups with distinct patterns of carotenoids were related to the phylogenic tree constructed on the basis of 16S rRNA sequences. Nostoc commune and Nostoc punctiforme were clustered in one monophyletic group and characterized by the occurrence of nostoxanthin, canthaxanthin, and myxol glycosides.</description><subject>Anabaena - genetics</subject><subject>Anabaena - metabolism</subject><subject>Anabaena - pathogenicity</subject><subject>Anhydrobiosis</subject><subject>Animal, plant and microbial ecology</subject><subject>Bacteriology</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Canthaxanthin - metabolism</subject><subject>carotenoid</subject><subject>Carotenoids</subject><subject>Carotenoids - metabolism</subject><subject>Ecology</subject><subject>ferredoxin‐NADP+ oxidoreductase</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, rRNA</subject><subject>Genetic Variation</subject><subject>Genotypes</subject><subject>Japan</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>nitrate/nitrite transporter</subject><subject>Nitrates - metabolism</subject><subject>Nitrites - metabolism</subject><subject>Nostoc commune - genetics</subject><subject>Nostoc commune - metabolism</subject><subject>Nostoc commune - pathogenicity</subject><subject>Phylogeny</subject><subject>random amplified polymorphic DNA</subject><subject>RNA, Ribosomal, 16S</subject><subject>Saccharides</subject><subject>Water stress</subject><subject>water stress protein</subject><subject>Xanthophylls - metabolism</subject><issn>0168-6496</issn><issn>1574-6941</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkVGP1CAUhYnRuOPqXzAkxvjUyi2UlgcfzGZ3NdnVF30mDNAZJi2M0MYZH_3lS7fjmmhMJCHcwHcuBw5CGEgJebzdlVA3rOCCQVkRgDJPUZeHR2j1cPAYrQjwtuBM8DP0LKUdIVBTRp6is6oinDeiXaGft6G3eupVxBvr7eg0Vt5gvbVDGNUh-DDkLb1VUenRRvdDjS54HDo8bi3OO9GmMTrVY31UPqwXahrwp5DGkJVhGCZv75u6MWFv3Wa7DtH5DU57q51Nz9GTTvXJvjit5-jr1eWXiw_Fzefrjxfvbwpdt7wuNCXQro0BWjHVWaE6DrpVJJeig86YWkHDtTGiAsPy40xnCQPWaEoBtKLn6M3Sdx_DtynbloNL2va98jZMSYqKQ51_pcrkqz_IXZiiz-Yk1NBQIihhmWoXSseQUrSd3Ec3qHiUQOQck9zJOQ05pyHnmOR9TPKQpS9PF0zrwZoH4a9cMvD6BKikVd9F5bVLv7m6aoWgPHPvFu676-3xvw3Iq8vbucp6uujDtP-Huvjb_h2ugb_a</recordid><startdate>201201</startdate><enddate>201201</enddate><creator>Arima, Hiromi</creator><creator>Horiguchi, Noriomi</creator><creator>Takaichi, Shinichi</creator><creator>Kofuji, Rumiko</creator><creator>Ishida, Ken-Ichiro</creator><creator>Wada, Keishiro</creator><creator>Sakamoto, Toshio</creator><general>Blackwell Publishing Ltd</general><general>Blackwell</general><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201201</creationdate><title>Molecular genetic and chemotaxonomic characterization of the terrestrial cyanobacterium Nostoc commune and its neighboring species</title><author>Arima, Hiromi ; Horiguchi, Noriomi ; Takaichi, Shinichi ; Kofuji, Rumiko ; Ishida, Ken-Ichiro ; Wada, Keishiro ; Sakamoto, Toshio</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5865-c3018bdd1324afe9af61c8a0fe99f1fdd5a176cdd921d4798dfe04147c3311ca3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Anabaena - genetics</topic><topic>Anabaena - metabolism</topic><topic>Anabaena - pathogenicity</topic><topic>Anhydrobiosis</topic><topic>Animal, plant and microbial ecology</topic><topic>Bacteriology</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Canthaxanthin - metabolism</topic><topic>carotenoid</topic><topic>Carotenoids</topic><topic>Carotenoids - metabolism</topic><topic>Ecology</topic><topic>ferredoxin‐NADP+ oxidoreductase</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA</topic><topic>Genetic Variation</topic><topic>Genotypes</topic><topic>Japan</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>nitrate/nitrite transporter</topic><topic>Nitrates - metabolism</topic><topic>Nitrites - metabolism</topic><topic>Nostoc commune - genetics</topic><topic>Nostoc commune - metabolism</topic><topic>Nostoc commune - pathogenicity</topic><topic>Phylogeny</topic><topic>random amplified polymorphic DNA</topic><topic>RNA, Ribosomal, 16S</topic><topic>Saccharides</topic><topic>Water stress</topic><topic>water stress protein</topic><topic>Xanthophylls - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Arima, Hiromi</creatorcontrib><creatorcontrib>Horiguchi, Noriomi</creatorcontrib><creatorcontrib>Takaichi, Shinichi</creatorcontrib><creatorcontrib>Kofuji, Rumiko</creatorcontrib><creatorcontrib>Ishida, Ken-Ichiro</creatorcontrib><creatorcontrib>Wada, Keishiro</creatorcontrib><creatorcontrib>Sakamoto, Toshio</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>FEMS microbiology ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Arima, Hiromi</au><au>Horiguchi, Noriomi</au><au>Takaichi, Shinichi</au><au>Kofuji, Rumiko</au><au>Ishida, Ken-Ichiro</au><au>Wada, Keishiro</au><au>Sakamoto, Toshio</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular genetic and chemotaxonomic characterization of the terrestrial cyanobacterium Nostoc commune and its neighboring species</atitle><jtitle>FEMS microbiology ecology</jtitle><addtitle>FEMS Microbiol Ecol</addtitle><date>2012-01</date><risdate>2012</risdate><volume>79</volume><issue>1</issue><spage>34</spage><epage>45</epage><pages>34-45</pages><issn>0168-6496</issn><eissn>1574-6941</eissn><coden>FMECEZ</coden><abstract>Abstract
The phylogeny of the terrestrial cyanobacterium Nostoc commune and its neighboring Nostoc species was studied using molecular genetic and chemotaxonomic approaches. At least eight genotypes of N. commune were characterized by the differences among 16S rRNA gene sequences and the petH gene encoding ferredoxin-NADP+ oxidoreductase and by random amplified polymorphic DNA analysis. The genotypes of N. commune were distributed in Japan without regional specificity. The nrtP gene encoding NrtP-type nitrate/nitrite permease was widely distributed in the genus Nostoc, suggesting that the occurrence of the nrtP gene can be one of the characteristic features that separate cyanobacteria into two groups. The wspA gene encoding a 36-kDa water stress protein was only found in N. commune and Nostoc verrucosum, suggesting that these Nostoc species that form massive colonies with extracellular polysaccharides can be exclusively characterized by the occurrence of the wspA gene. Fifteen species of Nostoc and Anabaena were investigated by comparing their carotenoid composition. Three groups with distinct patterns of carotenoids were related to the phylogenic tree constructed on the basis of 16S rRNA sequences. Nostoc commune and Nostoc punctiforme were clustered in one monophyletic group and characterized by the occurrence of nostoxanthin, canthaxanthin, and myxol glycosides.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>22066798</pmid><doi>10.1111/j.1574-6941.2011.01195.x</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Anabaena - genetics Anabaena - metabolism Anabaena - pathogenicity Anhydrobiosis Animal, plant and microbial ecology Bacteriology Base Sequence Biological and medical sciences Canthaxanthin - metabolism carotenoid Carotenoids Carotenoids - metabolism Ecology ferredoxin‐NADP+ oxidoreductase Fundamental and applied biological sciences. Psychology Genes, rRNA Genetic Variation Genotypes Japan Microbial ecology Microbiology Miscellaneous Molecular Sequence Data nitrate/nitrite transporter Nitrates - metabolism Nitrites - metabolism Nostoc commune - genetics Nostoc commune - metabolism Nostoc commune - pathogenicity Phylogeny random amplified polymorphic DNA RNA, Ribosomal, 16S Saccharides Water stress water stress protein Xanthophylls - metabolism |
| title | Molecular genetic and chemotaxonomic characterization of the terrestrial cyanobacterium Nostoc commune and its neighboring species |
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