BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development
In Arabidopsis, bric-a-brac, tramtrack and broad (BTB) domain scaffold proteins form a family of 80 proteins that have involvement in various signaling pathways. The five members of the subfamily of BTB AND TAZ DOMAIN proteins (BT1-BT5) have a typical domain structure that is only observed in land p...
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description | In Arabidopsis, bric-a-brac, tramtrack and broad (BTB) domain scaffold proteins form a family of 80 proteins that have involvement in various signaling pathways. The five members of the subfamily of BTB AND TAZ DOMAIN proteins (BT1-BT5) have a typical domain structure that is only observed in land plants. Here, we present a functional analysis of the BT family, of which at least four members are encoded by auxin-responsive genes. BT1 is a short-lived protein that is characteristically targeted for degradation by the 26S proteasome. Expression pattern, gene structure and sequence analyses indicate that BT1 and BT2 are closely related. They both localize to the nucleus and the cytosol, whereas the remaining BT proteins were determined as cytosolic proteins. Detailed molecular and phenotypic analysis of plants segregating for null mutations in the BT family revealed substantial redundancy among the BT members, and highlighted that BT proteins perform crucial roles in both male and female gametophyte development. BT2 seems to be the predominant gene in this process, in which it is functionally replaced by BT3 and BT1 through reciprocal transcription regulation. Compensational expression alters the steady-state mRNA levels among the remaining BT family members when other BT members are lost, and this contributes towards functional redundancy. Our data provide a surprising example of functional redundancy among genes required during gametophyte development, something that could not be detected in the current screens for gametophyte mutants. |
doi_str_mv | 10.1111/j.1365-313X.2008.03764.x |
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The five members of the subfamily of BTB AND TAZ DOMAIN proteins (BT1-BT5) have a typical domain structure that is only observed in land plants. Here, we present a functional analysis of the BT family, of which at least four members are encoded by auxin-responsive genes. BT1 is a short-lived protein that is characteristically targeted for degradation by the 26S proteasome. Expression pattern, gene structure and sequence analyses indicate that BT1 and BT2 are closely related. They both localize to the nucleus and the cytosol, whereas the remaining BT proteins were determined as cytosolic proteins. Detailed molecular and phenotypic analysis of plants segregating for null mutations in the BT family revealed substantial redundancy among the BT members, and highlighted that BT proteins perform crucial roles in both male and female gametophyte development. BT2 seems to be the predominant gene in this process, in which it is functionally replaced by BT3 and BT1 through reciprocal transcription regulation. Compensational expression alters the steady-state mRNA levels among the remaining BT family members when other BT members are lost, and this contributes towards functional redundancy. Our data provide a surprising example of functional redundancy among genes required during gametophyte development, something that could not be detected in the current screens for gametophyte mutants.</description><identifier>ISSN: 0960-7412</identifier><identifier>EISSN: 1365-313X</identifier><identifier>DOI: 10.1111/j.1365-313X.2008.03764.x</identifier><identifier>PMID: 19054356</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>26S proteasome ; Arabidopsis - genetics ; Arabidopsis - growth & development ; Arabidopsis - metabolism ; Arabidopsis Proteins - genetics ; Arabidopsis Proteins - metabolism ; auxin responsive ; Biological and medical sciences ; Botany ; Cloning, Molecular ; Cytosol - metabolism ; functional redundancy ; Fundamental and applied biological sciences. Psychology ; gametophyte development ; Gene expression ; Gene Expression Regulation, Developmental ; Gene Expression Regulation, Plant ; Genes, Plant ; Germ Cells, Plant - cytology ; Germ Cells, Plant - growth & development ; Germ Cells, Plant - metabolism ; Inbreeding ; Molecular and cellular biology ; Molecular genetics ; Multigene Family ; Multiprotein Complexes - genetics ; Multiprotein Complexes - metabolism ; Mutation ; Phenotype ; Proteasome Endopeptidase Complex - metabolism ; Protein Stability ; protein-protein interaction domain ; Proteins ; Protoplasts - cytology ; Protoplasts - metabolism ; reciprocal transcription regulation ; RNA, Messenger - analysis ; RNA, Messenger - genetics ; RNA, Messenger - metabolism ; RNA, Plant - genetics ; RNA, Plant - metabolism ; Seeds - genetics ; Seeds - growth & development ; Seeds - metabolism ; Signal transduction ; Species Specificity ; Transcription Factors - genetics ; Transcription Factors - metabolism ; Transcription, Genetic ; Transcription. Transcription factor. Splicing. Rna processing ; Transfection</subject><ispartof>The Plant journal : for cell and molecular biology, 2009-04, Vol.58 (1), p.109-121</ispartof><rights>2009 The Authors. Journal compilation © 2009 Blackwell Publishing Ltd</rights><rights>2009 INIST-CNRS</rights><rights>2009 The Authors. Journal compilation © 2009 Blackwell Publishing Ltd.</rights><rights>Journal compilation © 2009 Blackwell Publishing Ltd and the Society for Experimental Biology</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5654-959f2417133de479738bfd067f1dd1feafc74cf1120ea87df5c8f2e4f2cfac8a3</citedby><cites>FETCH-LOGICAL-c5654-959f2417133de479738bfd067f1dd1feafc74cf1120ea87df5c8f2e4f2cfac8a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1365-313X.2008.03764.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1365-313X.2008.03764.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,1427,27901,27902,45550,45551,46384,46808</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21273483$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19054356$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Robert, Hélène S</creatorcontrib><creatorcontrib>Quint, Ab</creatorcontrib><creatorcontrib>Brand, Daan</creatorcontrib><creatorcontrib>Vivian-Smith, Adam</creatorcontrib><creatorcontrib>Offringa, Remko</creatorcontrib><title>BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development</title><title>The Plant journal : for cell and molecular biology</title><addtitle>Plant J</addtitle><description>In Arabidopsis, bric-a-brac, tramtrack and broad (BTB) domain scaffold proteins form a family of 80 proteins that have involvement in various signaling pathways. The five members of the subfamily of BTB AND TAZ DOMAIN proteins (BT1-BT5) have a typical domain structure that is only observed in land plants. Here, we present a functional analysis of the BT family, of which at least four members are encoded by auxin-responsive genes. BT1 is a short-lived protein that is characteristically targeted for degradation by the 26S proteasome. Expression pattern, gene structure and sequence analyses indicate that BT1 and BT2 are closely related. They both localize to the nucleus and the cytosol, whereas the remaining BT proteins were determined as cytosolic proteins. Detailed molecular and phenotypic analysis of plants segregating for null mutations in the BT family revealed substantial redundancy among the BT members, and highlighted that BT proteins perform crucial roles in both male and female gametophyte development. BT2 seems to be the predominant gene in this process, in which it is functionally replaced by BT3 and BT1 through reciprocal transcription regulation. Compensational expression alters the steady-state mRNA levels among the remaining BT family members when other BT members are lost, and this contributes towards functional redundancy. Our data provide a surprising example of functional redundancy among genes required during gametophyte development, something that could not be detected in the current screens for gametophyte mutants.</description><subject>26S proteasome</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - growth & development</subject><subject>Arabidopsis - metabolism</subject><subject>Arabidopsis Proteins - genetics</subject><subject>Arabidopsis Proteins - metabolism</subject><subject>auxin responsive</subject><subject>Biological and medical sciences</subject><subject>Botany</subject><subject>Cloning, Molecular</subject><subject>Cytosol - metabolism</subject><subject>functional redundancy</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>gametophyte development</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Developmental</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes, Plant</subject><subject>Germ Cells, Plant - cytology</subject><subject>Germ Cells, Plant - growth & development</subject><subject>Germ Cells, Plant - metabolism</subject><subject>Inbreeding</subject><subject>Molecular and cellular biology</subject><subject>Molecular genetics</subject><subject>Multigene Family</subject><subject>Multiprotein Complexes - genetics</subject><subject>Multiprotein Complexes - metabolism</subject><subject>Mutation</subject><subject>Phenotype</subject><subject>Proteasome Endopeptidase Complex - metabolism</subject><subject>Protein Stability</subject><subject>protein-protein interaction domain</subject><subject>Proteins</subject><subject>Protoplasts - cytology</subject><subject>Protoplasts - metabolism</subject><subject>reciprocal transcription regulation</subject><subject>RNA, Messenger - analysis</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Messenger - metabolism</subject><subject>RNA, Plant - genetics</subject><subject>RNA, Plant - metabolism</subject><subject>Seeds - genetics</subject><subject>Seeds - growth & development</subject><subject>Seeds - metabolism</subject><subject>Signal transduction</subject><subject>Species Specificity</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - metabolism</subject><subject>Transcription, Genetic</subject><subject>Transcription. 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Psychology</topic><topic>gametophyte development</topic><topic>Gene expression</topic><topic>Gene Expression Regulation, Developmental</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes, Plant</topic><topic>Germ Cells, Plant - cytology</topic><topic>Germ Cells, Plant - growth & development</topic><topic>Germ Cells, Plant - metabolism</topic><topic>Inbreeding</topic><topic>Molecular and cellular biology</topic><topic>Molecular genetics</topic><topic>Multigene Family</topic><topic>Multiprotein Complexes - genetics</topic><topic>Multiprotein Complexes - metabolism</topic><topic>Mutation</topic><topic>Phenotype</topic><topic>Proteasome Endopeptidase Complex - metabolism</topic><topic>Protein Stability</topic><topic>protein-protein interaction domain</topic><topic>Proteins</topic><topic>Protoplasts - cytology</topic><topic>Protoplasts - metabolism</topic><topic>reciprocal transcription regulation</topic><topic>RNA, Messenger - analysis</topic><topic>RNA, Messenger - genetics</topic><topic>RNA, Messenger - metabolism</topic><topic>RNA, Plant - genetics</topic><topic>RNA, Plant - metabolism</topic><topic>Seeds - genetics</topic><topic>Seeds - growth & development</topic><topic>Seeds - metabolism</topic><topic>Signal transduction</topic><topic>Species Specificity</topic><topic>Transcription Factors - genetics</topic><topic>Transcription Factors - metabolism</topic><topic>Transcription, Genetic</topic><topic>Transcription. Transcription factor. Splicing. Rna processing</topic><topic>Transfection</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Robert, Hélène S</creatorcontrib><creatorcontrib>Quint, Ab</creatorcontrib><creatorcontrib>Brand, Daan</creatorcontrib><creatorcontrib>Vivian-Smith, Adam</creatorcontrib><creatorcontrib>Offringa, Remko</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The Plant journal : for cell and molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Robert, Hélène S</au><au>Quint, Ab</au><au>Brand, Daan</au><au>Vivian-Smith, Adam</au><au>Offringa, Remko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development</atitle><jtitle>The Plant journal : for cell and molecular biology</jtitle><addtitle>Plant J</addtitle><date>2009-04</date><risdate>2009</risdate><volume>58</volume><issue>1</issue><spage>109</spage><epage>121</epage><pages>109-121</pages><issn>0960-7412</issn><eissn>1365-313X</eissn><abstract>In Arabidopsis, bric-a-brac, tramtrack and broad (BTB) domain scaffold proteins form a family of 80 proteins that have involvement in various signaling pathways. The five members of the subfamily of BTB AND TAZ DOMAIN proteins (BT1-BT5) have a typical domain structure that is only observed in land plants. Here, we present a functional analysis of the BT family, of which at least four members are encoded by auxin-responsive genes. BT1 is a short-lived protein that is characteristically targeted for degradation by the 26S proteasome. Expression pattern, gene structure and sequence analyses indicate that BT1 and BT2 are closely related. They both localize to the nucleus and the cytosol, whereas the remaining BT proteins were determined as cytosolic proteins. Detailed molecular and phenotypic analysis of plants segregating for null mutations in the BT family revealed substantial redundancy among the BT members, and highlighted that BT proteins perform crucial roles in both male and female gametophyte development. BT2 seems to be the predominant gene in this process, in which it is functionally replaced by BT3 and BT1 through reciprocal transcription regulation. Compensational expression alters the steady-state mRNA levels among the remaining BT family members when other BT members are lost, and this contributes towards functional redundancy. Our data provide a surprising example of functional redundancy among genes required during gametophyte development, something that could not be detected in the current screens for gametophyte mutants.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>19054356</pmid><doi>10.1111/j.1365-313X.2008.03764.x</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 26S proteasome Arabidopsis - genetics Arabidopsis - growth & development Arabidopsis - metabolism Arabidopsis Proteins - genetics Arabidopsis Proteins - metabolism auxin responsive Biological and medical sciences Botany Cloning, Molecular Cytosol - metabolism functional redundancy Fundamental and applied biological sciences. Psychology gametophyte development Gene expression Gene Expression Regulation, Developmental Gene Expression Regulation, Plant Genes, Plant Germ Cells, Plant - cytology Germ Cells, Plant - growth & development Germ Cells, Plant - metabolism Inbreeding Molecular and cellular biology Molecular genetics Multigene Family Multiprotein Complexes - genetics Multiprotein Complexes - metabolism Mutation Phenotype Proteasome Endopeptidase Complex - metabolism Protein Stability protein-protein interaction domain Proteins Protoplasts - cytology Protoplasts - metabolism reciprocal transcription regulation RNA, Messenger - analysis RNA, Messenger - genetics RNA, Messenger - metabolism RNA, Plant - genetics RNA, Plant - metabolism Seeds - genetics Seeds - growth & development Seeds - metabolism Signal transduction Species Specificity Transcription Factors - genetics Transcription Factors - metabolism Transcription, Genetic Transcription. Transcription factor. Splicing. Rna processing Transfection |
title | BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development |
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