WheatGenome.info: An Integrated Database and Portal for Wheat Genome Information
Bread wheat (Triticum aestivum) is one of the most important crop plants, globally providing staple food for a large proportion of the human population. However, improvement of this crop has been limited due to its large and complex genome. Advances in genomics are supporting wheat crop improvement....
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| Veröffentlicht in: | Plant and cell physiology 2012-02, Vol.53 (2), p.e2-e2 |
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| container_title | Plant and cell physiology |
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| creator | Lai, Kaitao Berkman, Paul J. Lorenc, Michal Tadeusz Duran, Chris Smits, Lars Manoli, Sahana Stiller, Jiri Edwards, David |
| description | Bread wheat (Triticum aestivum) is one of the most important crop plants, globally providing staple food for a large proportion of the human population. However, improvement of this crop has been limited due to its large and complex genome. Advances in genomics are supporting wheat crop improvement. We provide a variety of web-based systems hosting wheat genome and genomic data to support wheat research and crop improvement. WheatGenome.info is an integrated database resource which includes multiple web-based applications. These include a GBrowse2-based wheat genome viewer with BLAST search portal, TAGdb for searching wheat second-generation genome sequence data, wheat autoSNPdb, links to wheat genetic maps using CMap and CMap3D, and a wheat genome Wiki to allow interaction between diverse wheat genome sequencing activities. This system includes links to a variety of wheat genome resources hosted at other research organizations. This integrated database aims to accelerate wheat genome research and is freely accessible via the web interface at http://www.wheatgenome.info/. |
| doi_str_mv | 10.1093/pcp/pcr141 |
| format | Article |
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However, improvement of this crop has been limited due to its large and complex genome. Advances in genomics are supporting wheat crop improvement. We provide a variety of web-based systems hosting wheat genome and genomic data to support wheat research and crop improvement. WheatGenome.info is an integrated database resource which includes multiple web-based applications. These include a GBrowse2-based wheat genome viewer with BLAST search portal, TAGdb for searching wheat second-generation genome sequence data, wheat autoSNPdb, links to wheat genetic maps using CMap and CMap3D, and a wheat genome Wiki to allow interaction between diverse wheat genome sequencing activities. This system includes links to a variety of wheat genome resources hosted at other research organizations. This integrated database aims to accelerate wheat genome research and is freely accessible via the web interface at http://www.wheatgenome.info/.</description><identifier>ISSN: 0032-0781</identifier><identifier>EISSN: 1471-9053</identifier><identifier>DOI: 10.1093/pcp/pcr141</identifier><identifier>PMID: 22009731</identifier><language>eng</language><publisher>Japan: Oxford University Press</publisher><subject>Chromosome Mapping ; Crops ; Data processing ; Databases, Genetic ; Expressed Sequence Tags ; Food ; Food plants ; Gene mapping ; Genome, Plant ; genomics ; Genomics - methods ; Internet ; Nucleotide sequence ; Software ; Triticum - genetics ; Triticum aestivum ; User-Computer Interface</subject><ispartof>Plant and cell physiology, 2012-02, Vol.53 (2), p.e2-e2</ispartof><rights>The Author 2011. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. 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However, improvement of this crop has been limited due to its large and complex genome. Advances in genomics are supporting wheat crop improvement. We provide a variety of web-based systems hosting wheat genome and genomic data to support wheat research and crop improvement. WheatGenome.info is an integrated database resource which includes multiple web-based applications. These include a GBrowse2-based wheat genome viewer with BLAST search portal, TAGdb for searching wheat second-generation genome sequence data, wheat autoSNPdb, links to wheat genetic maps using CMap and CMap3D, and a wheat genome Wiki to allow interaction between diverse wheat genome sequencing activities. This system includes links to a variety of wheat genome resources hosted at other research organizations. This integrated database aims to accelerate wheat genome research and is freely accessible via the web interface at http://www.wheatgenome.info/.</description><subject>Chromosome Mapping</subject><subject>Crops</subject><subject>Data processing</subject><subject>Databases, Genetic</subject><subject>Expressed Sequence Tags</subject><subject>Food</subject><subject>Food plants</subject><subject>Gene mapping</subject><subject>Genome, Plant</subject><subject>genomics</subject><subject>Genomics - methods</subject><subject>Internet</subject><subject>Nucleotide sequence</subject><subject>Software</subject><subject>Triticum - genetics</subject><subject>Triticum aestivum</subject><subject>User-Computer Interface</subject><issn>0032-0781</issn><issn>1471-9053</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kEFLwzAYhoMobk4v_gDJRRSh80vSNK23MXUOBu6geCxJm2plbWqSHvz3ZnZ63OEjH-F5X_gehM4JTAlk7LYrujCWxOQAjUksSJQBZ4doDMBoBCIlI3Ti3CdA2BkcoxGlAJlgZIzWbx9a-oVuTaOndVuZOzxr8bL1-t1Kr0t8L71U0mks2xKvjfVygytj8W8OD8HAh69G-tq0p-iokhunz3bvBL0-PrzMn6LV82I5n62iIibcRwyYYgASsjJJCBM8gTSlWmRaaYgLorlKUikU5ZwqGqc0hrQMZ4lC8RAt2ARdDb2dNV-9dj5valfozUa22vQuzyjhCReEBvJ6L0mAprA1kgT0ZkALa5yzuso7WzfSfgco37rOg-t8cB3gi11vrxpd_qN_cgNwOQCm7_YV_QCon4Tp</recordid><startdate>20120201</startdate><enddate>20120201</enddate><creator>Lai, Kaitao</creator><creator>Berkman, Paul J.</creator><creator>Lorenc, Michal Tadeusz</creator><creator>Duran, Chris</creator><creator>Smits, Lars</creator><creator>Manoli, Sahana</creator><creator>Stiller, Jiri</creator><creator>Edwards, David</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20120201</creationdate><title>WheatGenome.info: An Integrated Database and Portal for Wheat Genome Information</title><author>Lai, Kaitao ; Berkman, Paul J. ; Lorenc, Michal Tadeusz ; Duran, Chris ; Smits, Lars ; Manoli, Sahana ; Stiller, Jiri ; Edwards, David</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c415t-303b300a09d66137560882e79ebe04c1e5b68a7b2552b2482408d9057cb503bc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Chromosome Mapping</topic><topic>Crops</topic><topic>Data processing</topic><topic>Databases, Genetic</topic><topic>Expressed Sequence Tags</topic><topic>Food</topic><topic>Food plants</topic><topic>Gene mapping</topic><topic>Genome, Plant</topic><topic>genomics</topic><topic>Genomics - methods</topic><topic>Internet</topic><topic>Nucleotide sequence</topic><topic>Software</topic><topic>Triticum - genetics</topic><topic>Triticum aestivum</topic><topic>User-Computer Interface</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lai, Kaitao</creatorcontrib><creatorcontrib>Berkman, Paul J.</creatorcontrib><creatorcontrib>Lorenc, Michal Tadeusz</creatorcontrib><creatorcontrib>Duran, Chris</creatorcontrib><creatorcontrib>Smits, Lars</creatorcontrib><creatorcontrib>Manoli, Sahana</creatorcontrib><creatorcontrib>Stiller, Jiri</creatorcontrib><creatorcontrib>Edwards, David</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Plant and cell physiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lai, Kaitao</au><au>Berkman, Paul J.</au><au>Lorenc, Michal Tadeusz</au><au>Duran, Chris</au><au>Smits, Lars</au><au>Manoli, Sahana</au><au>Stiller, Jiri</au><au>Edwards, David</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>WheatGenome.info: An Integrated Database and Portal for Wheat Genome Information</atitle><jtitle>Plant and cell physiology</jtitle><addtitle>Plant Cell Physiol</addtitle><date>2012-02-01</date><risdate>2012</risdate><volume>53</volume><issue>2</issue><spage>e2</spage><epage>e2</epage><pages>e2-e2</pages><issn>0032-0781</issn><eissn>1471-9053</eissn><abstract>Bread wheat (Triticum aestivum) is one of the most important crop plants, globally providing staple food for a large proportion of the human population. 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| ispartof | Plant and cell physiology, 2012-02, Vol.53 (2), p.e2-e2 |
| issn | 0032-0781 1471-9053 |
| language | eng |
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| source | Oxford University Press Journals All Titles (1996-Current); MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Chromosome Mapping Crops Data processing Databases, Genetic Expressed Sequence Tags Food Food plants Gene mapping Genome, Plant genomics Genomics - methods Internet Nucleotide sequence Software Triticum - genetics Triticum aestivum User-Computer Interface |
| title | WheatGenome.info: An Integrated Database and Portal for Wheat Genome Information |
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