Evolution and Function of the Globin Intergenic Regulatory Regions of the Antarctic Dragonfishes (Notothenioidei: Bathydraconidae)
As the Southern Ocean cooled to −1.8 °C over the past 40 My, the teleostean clade Notothenioidei diversified and, under reduced selection pressure for an oxygen-transporting apparatus, became less reliant on hemoglobin and red blood cells. At the extreme of this trend, the crown group of Antarctic i...
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description | As the Southern Ocean cooled to −1.8 °C over the past 40 My, the teleostean clade Notothenioidei diversified and, under reduced selection pressure for an oxygen-transporting apparatus, became less reliant on hemoglobin and red blood cells. At the extreme of this trend, the crown group of Antarctic icefishes (Channichthyidae) lost both components of oxygen transport. Under the decreased selection scenario, we hypothesized that the Antarctic dragonfishes (Bathydraconidae, the red-blooded sister clade to the icefishes) evolved lower blood hemoglobin concentrations because their globin gene complexes (α- and β-globin gene pairs linked by a regulatory intergene) transcribe globin mRNAs less effectively than those of basal notothenioids (e.g., the Nototheniidae [notothens]). To test our hypothesis, we 1) sequenced the α/β-intergenes of the adult globin complexes of three notothen and eight dragonfish species and 2) measured globin transcript levels in representative species from each group. The typical nototheniid intergene was ∼3-4 kb in length. The bathydraconid intergenes resolved into three subclasses (long [3.8 kb], intermediate [3.0 kb], and short [1.5-2.3 kb]) that corresponded to the three subclades proposed for the taxon. Although they varied in length due to indels, the three notothen and eight dragonfish intergenes contained a conserved ∼90-nt element that we have previously shown to be required for globin gene transcription. Using the quantitative polymerase chain reaction, we found that globin mRNA levels in red cells from one notothen species and from one species of each dragonfish subclade were equivalent statistically. Thus, our results indicate that the bathydraconids have evolved adult globin loci whose regulatory intergenes tend to be shorter than those of the more basal nototheniids yet are equivalent in transcriptional efficacy. Their low blood hemoglobin concentrations are most likely due to reduction in hematocrit. |
doi_str_mv | 10.1093/molbev/msr278 |
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William</creator><creatorcontrib>Lau, Yuk-Ting ; Parker, Sandra K. ; Near, Thomas J. ; Detrich, H. William</creatorcontrib><description>As the Southern Ocean cooled to −1.8 °C over the past 40 My, the teleostean clade Notothenioidei diversified and, under reduced selection pressure for an oxygen-transporting apparatus, became less reliant on hemoglobin and red blood cells. At the extreme of this trend, the crown group of Antarctic icefishes (Channichthyidae) lost both components of oxygen transport. Under the decreased selection scenario, we hypothesized that the Antarctic dragonfishes (Bathydraconidae, the red-blooded sister clade to the icefishes) evolved lower blood hemoglobin concentrations because their globin gene complexes (α- and β-globin gene pairs linked by a regulatory intergene) transcribe globin mRNAs less effectively than those of basal notothenioids (e.g., the Nototheniidae [notothens]). To test our hypothesis, we 1) sequenced the α/β-intergenes of the adult globin complexes of three notothen and eight dragonfish species and 2) measured globin transcript levels in representative species from each group. The typical nototheniid intergene was ∼3-4 kb in length. The bathydraconid intergenes resolved into three subclasses (long [3.8 kb], intermediate [3.0 kb], and short [1.5-2.3 kb]) that corresponded to the three subclades proposed for the taxon. Although they varied in length due to indels, the three notothen and eight dragonfish intergenes contained a conserved ∼90-nt element that we have previously shown to be required for globin gene transcription. Using the quantitative polymerase chain reaction, we found that globin mRNA levels in red cells from one notothen species and from one species of each dragonfish subclade were equivalent statistically. Thus, our results indicate that the bathydraconids have evolved adult globin loci whose regulatory intergenes tend to be shorter than those of the more basal nototheniids yet are equivalent in transcriptional efficacy. Their low blood hemoglobin concentrations are most likely due to reduction in hematocrit.</description><identifier>ISSN: 0737-4038</identifier><identifier>EISSN: 1537-1719</identifier><identifier>DOI: 10.1093/molbev/msr278</identifier><identifier>PMID: 22075115</identifier><language>eng</language><publisher>United States: Oxford University Press</publisher><subject>Adaptation, Biological - genetics ; Animals ; Base Sequence ; Bathydraconidae ; Channichthyidae ; Chromosomes, Artificial, Bacterial - genetics ; Cloning, Molecular ; DNA, Intergenic - genetics ; Evolution, Molecular ; Fish ; Gene Expression Profiling ; Globins - genetics ; Globins - metabolism ; Hemoglobin ; Molecular Sequence Data ; Nototheniidae ; Notothenioidei ; Oxygen ; Perciformes - genetics ; Polymerase chain reaction ; Regulatory Sequences, Nucleic Acid - genetics ; Ribonucleic acid ; RNA ; Sequence Analysis, DNA ; Species Specificity</subject><ispartof>Molecular biology and evolution, 2012-03, Vol.29 (3), p.1071-1080</ispartof><rights>The Author 2011. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2012</rights><rights>Copyright Oxford Publishing Limited(England) Mar 2012</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c424t-4479c46e0462ba388fdb7fce6d3ea23266e461f6d113c72cb7d93b37808a76bf3</citedby><cites>FETCH-LOGICAL-c424t-4479c46e0462ba388fdb7fce6d3ea23266e461f6d113c72cb7d93b37808a76bf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,1598,27903,27904</link.rule.ids><linktorsrc>$$Uhttps://dx.doi.org/10.1093/molbev/msr278$$EView_record_in_Oxford_University_Press$$FView_record_in_$$GOxford_University_Press</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22075115$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lau, Yuk-Ting</creatorcontrib><creatorcontrib>Parker, Sandra K.</creatorcontrib><creatorcontrib>Near, Thomas J.</creatorcontrib><creatorcontrib>Detrich, H. William</creatorcontrib><title>Evolution and Function of the Globin Intergenic Regulatory Regions of the Antarctic Dragonfishes (Notothenioidei: Bathydraconidae)</title><title>Molecular biology and evolution</title><addtitle>Mol Biol Evol</addtitle><description>As the Southern Ocean cooled to −1.8 °C over the past 40 My, the teleostean clade Notothenioidei diversified and, under reduced selection pressure for an oxygen-transporting apparatus, became less reliant on hemoglobin and red blood cells. At the extreme of this trend, the crown group of Antarctic icefishes (Channichthyidae) lost both components of oxygen transport. Under the decreased selection scenario, we hypothesized that the Antarctic dragonfishes (Bathydraconidae, the red-blooded sister clade to the icefishes) evolved lower blood hemoglobin concentrations because their globin gene complexes (α- and β-globin gene pairs linked by a regulatory intergene) transcribe globin mRNAs less effectively than those of basal notothenioids (e.g., the Nototheniidae [notothens]). To test our hypothesis, we 1) sequenced the α/β-intergenes of the adult globin complexes of three notothen and eight dragonfish species and 2) measured globin transcript levels in representative species from each group. The typical nototheniid intergene was ∼3-4 kb in length. The bathydraconid intergenes resolved into three subclasses (long [3.8 kb], intermediate [3.0 kb], and short [1.5-2.3 kb]) that corresponded to the three subclades proposed for the taxon. Although they varied in length due to indels, the three notothen and eight dragonfish intergenes contained a conserved ∼90-nt element that we have previously shown to be required for globin gene transcription. Using the quantitative polymerase chain reaction, we found that globin mRNA levels in red cells from one notothen species and from one species of each dragonfish subclade were equivalent statistically. Thus, our results indicate that the bathydraconids have evolved adult globin loci whose regulatory intergenes tend to be shorter than those of the more basal nototheniids yet are equivalent in transcriptional efficacy. Their low blood hemoglobin concentrations are most likely due to reduction in hematocrit.</description><subject>Adaptation, Biological - genetics</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Bathydraconidae</subject><subject>Channichthyidae</subject><subject>Chromosomes, Artificial, Bacterial - genetics</subject><subject>Cloning, Molecular</subject><subject>DNA, Intergenic - genetics</subject><subject>Evolution, Molecular</subject><subject>Fish</subject><subject>Gene Expression Profiling</subject><subject>Globins - genetics</subject><subject>Globins - metabolism</subject><subject>Hemoglobin</subject><subject>Molecular Sequence Data</subject><subject>Nototheniidae</subject><subject>Notothenioidei</subject><subject>Oxygen</subject><subject>Perciformes - genetics</subject><subject>Polymerase chain reaction</subject><subject>Regulatory Sequences, Nucleic Acid - genetics</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Sequence Analysis, DNA</subject><subject>Species Specificity</subject><issn>0737-4038</issn><issn>1537-1719</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0c1PFDEYBvDGaGRBj15N40U4DPRr2hlviIAkRBOj50mnfWe3ZKZd2g7JXv3L6bqAiQc59W3665M2D0LvKDmmpOUnUxh7uDuZUmSqeYEWtOaqooq2L9GCqDILwps9tJ_SDSFUCClfoz3GiKoprRfo9_ldGOfsgsfaW3wxe_NnEwacV4Avx9A7j698hrgE7wz-Act51DnEzXYsND3aU591LLcN_hL1MvjBpRUkfPgt5FDOvQvOgvuEP-u82tioTfDOajh6g14Nekzw9mE9QL8uzn-efa2uv19enZ1eV0YwkSshVGuEBCIk6zVvmsH2ajAgLQfNOJMShKSDtJRyo5jplW15z1VDGq1kP_AD9HGXu47hdoaUu8klA-OoPYQ5dS2jtRRM1UUe_ldSQpqGKdVu6Yd_6E2Yoy__KHk1JYIKWVC1QyaGlCIM3Tq6ScdNSeq2LXa7Frtdi8W_fwid-wnsk36s7e8Dw7x-Juse2LSpVA</recordid><startdate>20120301</startdate><enddate>20120301</enddate><creator>Lau, Yuk-Ting</creator><creator>Parker, Sandra K.</creator><creator>Near, Thomas J.</creator><creator>Detrich, H. 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William</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evolution and Function of the Globin Intergenic Regulatory Regions of the Antarctic Dragonfishes (Notothenioidei: Bathydraconidae)</atitle><jtitle>Molecular biology and evolution</jtitle><addtitle>Mol Biol Evol</addtitle><date>2012-03-01</date><risdate>2012</risdate><volume>29</volume><issue>3</issue><spage>1071</spage><epage>1080</epage><pages>1071-1080</pages><issn>0737-4038</issn><eissn>1537-1719</eissn><abstract>As the Southern Ocean cooled to −1.8 °C over the past 40 My, the teleostean clade Notothenioidei diversified and, under reduced selection pressure for an oxygen-transporting apparatus, became less reliant on hemoglobin and red blood cells. At the extreme of this trend, the crown group of Antarctic icefishes (Channichthyidae) lost both components of oxygen transport. Under the decreased selection scenario, we hypothesized that the Antarctic dragonfishes (Bathydraconidae, the red-blooded sister clade to the icefishes) evolved lower blood hemoglobin concentrations because their globin gene complexes (α- and β-globin gene pairs linked by a regulatory intergene) transcribe globin mRNAs less effectively than those of basal notothenioids (e.g., the Nototheniidae [notothens]). To test our hypothesis, we 1) sequenced the α/β-intergenes of the adult globin complexes of three notothen and eight dragonfish species and 2) measured globin transcript levels in representative species from each group. The typical nototheniid intergene was ∼3-4 kb in length. The bathydraconid intergenes resolved into three subclasses (long [3.8 kb], intermediate [3.0 kb], and short [1.5-2.3 kb]) that corresponded to the three subclades proposed for the taxon. Although they varied in length due to indels, the three notothen and eight dragonfish intergenes contained a conserved ∼90-nt element that we have previously shown to be required for globin gene transcription. Using the quantitative polymerase chain reaction, we found that globin mRNA levels in red cells from one notothen species and from one species of each dragonfish subclade were equivalent statistically. Thus, our results indicate that the bathydraconids have evolved adult globin loci whose regulatory intergenes tend to be shorter than those of the more basal nototheniids yet are equivalent in transcriptional efficacy. Their low blood hemoglobin concentrations are most likely due to reduction in hematocrit.</abstract><cop>United States</cop><pub>Oxford University Press</pub><pmid>22075115</pmid><doi>10.1093/molbev/msr278</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adaptation, Biological - genetics Animals Base Sequence Bathydraconidae Channichthyidae Chromosomes, Artificial, Bacterial - genetics Cloning, Molecular DNA, Intergenic - genetics Evolution, Molecular Fish Gene Expression Profiling Globins - genetics Globins - metabolism Hemoglobin Molecular Sequence Data Nototheniidae Notothenioidei Oxygen Perciformes - genetics Polymerase chain reaction Regulatory Sequences, Nucleic Acid - genetics Ribonucleic acid RNA Sequence Analysis, DNA Species Specificity |
title | Evolution and Function of the Globin Intergenic Regulatory Regions of the Antarctic Dragonfishes (Notothenioidei: Bathydraconidae) |
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