Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera
Order Chiroptera is a unique group of mammals whose members have attained self-powered flight as their main mode of locomotion. Much speculation persists regarding bat evolution; however, lack of sufficient molecular data hampers evolutionary and conservation studies. Of ~ 1200 species, complete mit...
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| Veröffentlicht in: | Gene 2012-01, Vol.492 (1), p.121-129 |
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| creator | Meganathan, P.R. Pagan, Heidi J.T. McCulloch, Eve S. Stevens, Richard D. Ray, David A. |
| description | Order Chiroptera is a unique group of mammals whose members have attained self-powered flight as their main mode of locomotion. Much speculation persists regarding bat evolution; however, lack of sufficient molecular data hampers evolutionary and conservation studies. Of ~
1200 species, complete mitochondrial genome sequences are available for only eleven. Additional sequences should be generated if we are to resolve many questions concerning these fascinating mammals. Herein, we describe the complete mitochondrial genomes of three bats:
Corynorhinus rafinesquii,
Lasiurus borealis and
Artibeus lituratus. We also compare the currently available mitochondrial genomes and analyze codon usage in Chiroptera.
C. rafinesquii,
L. borealis and
A. lituratus mitochondrial genomes are 16438
bp, 17048
bp and 16709
bp, respectively. Genome organization and gene arrangements are similar to other bats. Phylogenetic analyses using complete mitochondrial genome sequences support previously established phylogenetic relationships and suggest utility in future studies focusing on the evolutionary aspects of these species. Comprehensive analyses of available bat mitochondrial genomes reveal distinct nucleotide patterns and synonymous codon preferences corresponding to different chiropteran families. These patterns suggest that mutational and selection forces are acting to different extents within Chiroptera and shape their mitochondrial genomes.
► Complete mitochondrial genomes for three bats are reported and detailed. ► Evolutionary patterns and codon usage biases in chiropteran mt-genomes are analyzed. ► Selection and mutation are impacting distinct bat lineages in dissimilar ways. |
| doi_str_mv | 10.1016/j.gene.2011.10.038 |
| format | Article |
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1200 species, complete mitochondrial genome sequences are available for only eleven. Additional sequences should be generated if we are to resolve many questions concerning these fascinating mammals. Herein, we describe the complete mitochondrial genomes of three bats:
Corynorhinus rafinesquii,
Lasiurus borealis and
Artibeus lituratus. We also compare the currently available mitochondrial genomes and analyze codon usage in Chiroptera.
C. rafinesquii,
L. borealis and
A. lituratus mitochondrial genomes are 16438
bp, 17048
bp and 16709
bp, respectively. Genome organization and gene arrangements are similar to other bats. Phylogenetic analyses using complete mitochondrial genome sequences support previously established phylogenetic relationships and suggest utility in future studies focusing on the evolutionary aspects of these species. Comprehensive analyses of available bat mitochondrial genomes reveal distinct nucleotide patterns and synonymous codon preferences corresponding to different chiropteran families. These patterns suggest that mutational and selection forces are acting to different extents within Chiroptera and shape their mitochondrial genomes.
► Complete mitochondrial genomes for three bats are reported and detailed. ► Evolutionary patterns and codon usage biases in chiropteran mt-genomes are analyzed. ► Selection and mutation are impacting distinct bat lineages in dissimilar ways.</description><identifier>ISSN: 0378-1119</identifier><identifier>EISSN: 1879-0038</identifier><identifier>DOI: 10.1016/j.gene.2011.10.038</identifier><identifier>PMID: 22041054</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Animals ; Artibeus ; Artibeus lituratus ; Base Composition ; Base Sequence ; Chiroptera ; Chiroptera - genetics ; Codon ; Codon usage bias ; Corynorhinus rafinesquii ; DNA, Mitochondrial ; Evolution, Molecular ; Evolutionary forces ; genes ; Genes, rRNA ; Genome, Mitochondrial ; Lasiurus borealis ; mammals ; mitochondrial DNA ; Mitochondrial genome ; Molecular Sequence Data ; nucleotide sequences ; Phylogeny ; Protein Biosynthesis ; RNA, Transfer - genetics ; RNA, Untranslated ; Sequence Analysis, DNA</subject><ispartof>Gene, 2012-01, Vol.492 (1), p.121-129</ispartof><rights>2011 Elsevier B.V.</rights><rights>Copyright © 2011 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c411t-672104eb2498b5a48021c86e834fda43016321147c0de92a55ca9ee41c22a563</citedby><cites>FETCH-LOGICAL-c411t-672104eb2498b5a48021c86e834fda43016321147c0de92a55ca9ee41c22a563</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.gene.2011.10.038$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>315,782,786,3554,27933,27934,46004</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22041054$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Meganathan, P.R.</creatorcontrib><creatorcontrib>Pagan, Heidi J.T.</creatorcontrib><creatorcontrib>McCulloch, Eve S.</creatorcontrib><creatorcontrib>Stevens, Richard D.</creatorcontrib><creatorcontrib>Ray, David A.</creatorcontrib><title>Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera</title><title>Gene</title><addtitle>Gene</addtitle><description>Order Chiroptera is a unique group of mammals whose members have attained self-powered flight as their main mode of locomotion. Much speculation persists regarding bat evolution; however, lack of sufficient molecular data hampers evolutionary and conservation studies. Of ~
1200 species, complete mitochondrial genome sequences are available for only eleven. Additional sequences should be generated if we are to resolve many questions concerning these fascinating mammals. Herein, we describe the complete mitochondrial genomes of three bats:
Corynorhinus rafinesquii,
Lasiurus borealis and
Artibeus lituratus. We also compare the currently available mitochondrial genomes and analyze codon usage in Chiroptera.
C. rafinesquii,
L. borealis and
A. lituratus mitochondrial genomes are 16438
bp, 17048
bp and 16709
bp, respectively. Genome organization and gene arrangements are similar to other bats. Phylogenetic analyses using complete mitochondrial genome sequences support previously established phylogenetic relationships and suggest utility in future studies focusing on the evolutionary aspects of these species. Comprehensive analyses of available bat mitochondrial genomes reveal distinct nucleotide patterns and synonymous codon preferences corresponding to different chiropteran families. These patterns suggest that mutational and selection forces are acting to different extents within Chiroptera and shape their mitochondrial genomes.
► Complete mitochondrial genomes for three bats are reported and detailed. ► Evolutionary patterns and codon usage biases in chiropteran mt-genomes are analyzed. ► Selection and mutation are impacting distinct bat lineages in dissimilar ways.</description><subject>Animals</subject><subject>Artibeus</subject><subject>Artibeus lituratus</subject><subject>Base Composition</subject><subject>Base Sequence</subject><subject>Chiroptera</subject><subject>Chiroptera - genetics</subject><subject>Codon</subject><subject>Codon usage bias</subject><subject>Corynorhinus rafinesquii</subject><subject>DNA, Mitochondrial</subject><subject>Evolution, Molecular</subject><subject>Evolutionary forces</subject><subject>genes</subject><subject>Genes, rRNA</subject><subject>Genome, Mitochondrial</subject><subject>Lasiurus borealis</subject><subject>mammals</subject><subject>mitochondrial DNA</subject><subject>Mitochondrial genome</subject><subject>Molecular Sequence Data</subject><subject>nucleotide sequences</subject><subject>Phylogeny</subject><subject>Protein Biosynthesis</subject><subject>RNA, Transfer - genetics</subject><subject>RNA, Untranslated</subject><subject>Sequence Analysis, DNA</subject><issn>0378-1119</issn><issn>1879-0038</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkcFu1DAQhi0EokvhBTiAb5yyeBx7k0hc0IoCUiUOlLPlOJOuV0kcbG-rPhcvyKRpkbiAD7Zn9P2_rfkZew1iCwJ274_ba5xwKwUANbairJ-wDdRVUwi6P2UbUVZ1AQDNGXuR0lHQ0lo-Z2dSCgVCqw37tQ_jPGBGPvoc3CFMXfR24OQcRuQJf55wcph46Hk-RETe2px4mtF56tqp47eHMOCj4G8XO9nhLhEX8Qapnm3OGKd7Nxe6MPHW29VlQNrSaZ5DzDwHbumhRJI0Dz5zP_H9wccwk9y-ZM96OyR89XCes6uLT1f7L8Xlt89f9x8vC6cAcrGrJAiFrVRN3WqraiHB1TusS9V3VpU0wlICqMqJDhtptXa2QVTgJBW78py9W23nGGgKKZvRJ4fDYCcMp2QaKaqmAV3-nwRZCw1KEylX0sWQUsTezNGPNt4ZEGYJ1RzNEqpZQl16FCSJ3jzYn9oRuz-SxxQJeLsCvQ3GXkefzI_v5KAp8LLaiYX4sBJI87rxGE2i_CjYzkd02XTB_-sHvwHBLL7s</recordid><startdate>20120115</startdate><enddate>20120115</enddate><creator>Meganathan, P.R.</creator><creator>Pagan, Heidi J.T.</creator><creator>McCulloch, Eve S.</creator><creator>Stevens, Richard D.</creator><creator>Ray, David A.</creator><general>Elsevier B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20120115</creationdate><title>Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera</title><author>Meganathan, P.R. ; Pagan, Heidi J.T. ; McCulloch, Eve S. ; Stevens, Richard D. ; Ray, David A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c411t-672104eb2498b5a48021c86e834fda43016321147c0de92a55ca9ee41c22a563</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Animals</topic><topic>Artibeus</topic><topic>Artibeus lituratus</topic><topic>Base Composition</topic><topic>Base Sequence</topic><topic>Chiroptera</topic><topic>Chiroptera - genetics</topic><topic>Codon</topic><topic>Codon usage bias</topic><topic>Corynorhinus rafinesquii</topic><topic>DNA, Mitochondrial</topic><topic>Evolution, Molecular</topic><topic>Evolutionary forces</topic><topic>genes</topic><topic>Genes, rRNA</topic><topic>Genome, Mitochondrial</topic><topic>Lasiurus borealis</topic><topic>mammals</topic><topic>mitochondrial DNA</topic><topic>Mitochondrial genome</topic><topic>Molecular Sequence Data</topic><topic>nucleotide sequences</topic><topic>Phylogeny</topic><topic>Protein Biosynthesis</topic><topic>RNA, Transfer - genetics</topic><topic>RNA, Untranslated</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Meganathan, P.R.</creatorcontrib><creatorcontrib>Pagan, Heidi J.T.</creatorcontrib><creatorcontrib>McCulloch, Eve S.</creatorcontrib><creatorcontrib>Stevens, Richard D.</creatorcontrib><creatorcontrib>Ray, David A.</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Gene</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Meganathan, P.R.</au><au>Pagan, Heidi J.T.</au><au>McCulloch, Eve S.</au><au>Stevens, Richard D.</au><au>Ray, David A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera</atitle><jtitle>Gene</jtitle><addtitle>Gene</addtitle><date>2012-01-15</date><risdate>2012</risdate><volume>492</volume><issue>1</issue><spage>121</spage><epage>129</epage><pages>121-129</pages><issn>0378-1119</issn><eissn>1879-0038</eissn><abstract>Order Chiroptera is a unique group of mammals whose members have attained self-powered flight as their main mode of locomotion. Much speculation persists regarding bat evolution; however, lack of sufficient molecular data hampers evolutionary and conservation studies. Of ~
1200 species, complete mitochondrial genome sequences are available for only eleven. Additional sequences should be generated if we are to resolve many questions concerning these fascinating mammals. Herein, we describe the complete mitochondrial genomes of three bats:
Corynorhinus rafinesquii,
Lasiurus borealis and
Artibeus lituratus. We also compare the currently available mitochondrial genomes and analyze codon usage in Chiroptera.
C. rafinesquii,
L. borealis and
A. lituratus mitochondrial genomes are 16438
bp, 17048
bp and 16709
bp, respectively. Genome organization and gene arrangements are similar to other bats. Phylogenetic analyses using complete mitochondrial genome sequences support previously established phylogenetic relationships and suggest utility in future studies focusing on the evolutionary aspects of these species. Comprehensive analyses of available bat mitochondrial genomes reveal distinct nucleotide patterns and synonymous codon preferences corresponding to different chiropteran families. These patterns suggest that mutational and selection forces are acting to different extents within Chiroptera and shape their mitochondrial genomes.
► Complete mitochondrial genomes for three bats are reported and detailed. ► Evolutionary patterns and codon usage biases in chiropteran mt-genomes are analyzed. ► Selection and mutation are impacting distinct bat lineages in dissimilar ways.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>22041054</pmid><doi>10.1016/j.gene.2011.10.038</doi><tpages>9</tpages></addata></record> |
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| subjects | Animals Artibeus Artibeus lituratus Base Composition Base Sequence Chiroptera Chiroptera - genetics Codon Codon usage bias Corynorhinus rafinesquii DNA, Mitochondrial Evolution, Molecular Evolutionary forces genes Genes, rRNA Genome, Mitochondrial Lasiurus borealis mammals mitochondrial DNA Mitochondrial genome Molecular Sequence Data nucleotide sequences Phylogeny Protein Biosynthesis RNA, Transfer - genetics RNA, Untranslated Sequence Analysis, DNA |
| title | Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera |
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