Genetic diversity and mycotoxin production of Fusarium lactis species complex isolates from sweet pepper
An internal fruit rot disease of sweet peppers was first detected in Belgium in 2003. Research conducted mostly in Canada indicates that this disease is primarily caused by Fusarium lactis Pirotta. Ninety-eight Fusarium isolates obtained from diseased sweet peppers from Belgium, as well as from othe...
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| creator | Van Poucke, Kris Monbaliu, Sofie Munaut, Françoise Heungens, Kurt De Saeger, Sarah Van Hove, François |
| description | An internal fruit rot disease of sweet peppers was first detected in Belgium in 2003. Research conducted mostly in Canada indicates that this disease is primarily caused by
Fusarium lactis Pirotta. Ninety-eight
Fusarium isolates obtained from diseased sweet peppers from Belgium, as well as from other countries (Canada, the Netherlands and the United Kingdom) were identified by sequencing the translation elongation factor 1α (EF). Of these 98 isolates, 13 were identified as
F. oxysporum Schltdl., nine as
F. proliferatum (Matsush.) Nirenberg and two belonged to clade 3 of the
F. solani species complex. Of the 74 remaining isolates, the EF sequence showed 97% to 98% similarity to
F. lactis. Of these isolates, the β-tubulin (TUB), calmodulin (CAM) and the second largest subunit of RNA polymerase II (
RPB2) genes were also sequenced. Analysis of the combined sequences revealed that the 74 isolates share nine combined sequences that correspond to nine multilocus sequence types (STs), while the
F. lactis neotype strain and one other strain, both isolated from figs, form a separate ST. Together, these 10 STs represent a monophyletic
F. lactis species complex (FLASC).
An unusually high level of genetic diversity was observed between (groups of) these STs. Two of them (ST5 and ST6) fulfilled the criteria for species recognition based on genealogical exclusivity and together represent a new monophyletic species lineage (FLASC-1). The seven other STs, together with the
F. lactis neotype ST, form a paraphyletic species lineage in the African clade of the
Gibberella fujikuroi species complex (GFSC). From each of the 10 STs, the mycotoxin production was assessed using a multi-mycotoxin liquid chromatography mass spectrometry method. Out of the 27 analyzed mycotoxins, beauvericin and fumonisins were detected in sweet pepper tissue and in maize kernels. The 10 STs clearly differed in the amount of mycotoxin produced, but there was only limited congruence between the production profile and the phylogenetic analysis. Furthermore, the morphological characterization (based on mycelial growth rate and the length of macroconidia) showed distinct differences between the 10 STs, but again there was limited congruence with the phylogenetic results. In conclusion, the data presented in this study demonstrate that 75% of the isolates obtained from sweet pepper with internal fruit rot belong to a
F. lactis species complex (FLASC), including a new FLASC-1 monophyletic species, and that |
| doi_str_mv | 10.1016/j.ijfoodmicro.2011.10.011 |
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Fusarium lactis Pirotta. Ninety-eight
Fusarium isolates obtained from diseased sweet peppers from Belgium, as well as from other countries (Canada, the Netherlands and the United Kingdom) were identified by sequencing the translation elongation factor 1α (EF). Of these 98 isolates, 13 were identified as
F. oxysporum Schltdl., nine as
F. proliferatum (Matsush.) Nirenberg and two belonged to clade 3 of the
F. solani species complex. Of the 74 remaining isolates, the EF sequence showed 97% to 98% similarity to
F. lactis. Of these isolates, the β-tubulin (TUB), calmodulin (CAM) and the second largest subunit of RNA polymerase II (
RPB2) genes were also sequenced. Analysis of the combined sequences revealed that the 74 isolates share nine combined sequences that correspond to nine multilocus sequence types (STs), while the
F. lactis neotype strain and one other strain, both isolated from figs, form a separate ST. Together, these 10 STs represent a monophyletic
F. lactis species complex (FLASC).
An unusually high level of genetic diversity was observed between (groups of) these STs. Two of them (ST5 and ST6) fulfilled the criteria for species recognition based on genealogical exclusivity and together represent a new monophyletic species lineage (FLASC-1). The seven other STs, together with the
F. lactis neotype ST, form a paraphyletic species lineage in the African clade of the
Gibberella fujikuroi species complex (GFSC). From each of the 10 STs, the mycotoxin production was assessed using a multi-mycotoxin liquid chromatography mass spectrometry method. Out of the 27 analyzed mycotoxins, beauvericin and fumonisins were detected in sweet pepper tissue and in maize kernels. The 10 STs clearly differed in the amount of mycotoxin produced, but there was only limited congruence between the production profile and the phylogenetic analysis. Furthermore, the morphological characterization (based on mycelial growth rate and the length of macroconidia) showed distinct differences between the 10 STs, but again there was limited congruence with the phylogenetic results. In conclusion, the data presented in this study demonstrate that 75% of the isolates obtained from sweet pepper with internal fruit rot belong to a
F. lactis species complex (FLASC), including a new FLASC-1 monophyletic species, and that the members of this complex display great genetic and phenotypic diversity.
► We describe a
Fusarium lactis species complex (FLASC). ► The majority of isolates from internal fruit rot of sweet pepper belong to this FLASC. ► Within the FLASC, nine multilocus sequence types (STs) were identified. ► The FLASC includes a new monophyletic species, FLASC-1. ► Beauvericin and fumonisin production by FLASC isolates is ST-dependent.</description><identifier>ISSN: 0168-1605</identifier><identifier>EISSN: 1879-3460</identifier><identifier>DOI: 10.1016/j.ijfoodmicro.2011.10.011</identifier><identifier>PMID: 22098923</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Beauvericin ; Belgium ; Calcium-binding protein ; Calmodulin ; Calmodulin - genetics ; Canada ; Capsicum - microbiology ; Capsicum annuum ; Data processing ; DNA-directed RNA polymerase ; Evolution ; Fruit rot ; Fumonisin ; Fumonisins ; Fusarium ; Fusarium - genetics ; Fusarium - isolation & purification ; Fusarium - metabolism ; Fusarium proliferatum ; Genetic diversity ; Genetic Variation ; Gibberella fujikuroi ; Growth rate ; Internal fruit rot ; Kernels ; Liquid chromatography ; Mass spectroscopy ; Molecular Sequence Data ; Multilocus Sequence Typing ; Mycelia ; Mycotoxins ; Mycotoxins - analysis ; Mycotoxins - biosynthesis ; Mycotoxins - genetics ; Netherlands ; Peptide Elongation Factor 1 - genetics ; Phylogeny ; RNA Polymerase II - genetics ; Sweet taste ; Translation elongation ; Tubulin ; Tubulin - genetics ; United Kingdom ; Zea mays ; Zea mays - genetics ; Zea mays - microbiology</subject><ispartof>International journal of food microbiology, 2012-02, Vol.153 (1), p.28-37</ispartof><rights>2011</rights><rights>Copyright © 2011. Published by Elsevier B.V.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c459t-206c3ecfaaec54444243bd5251b6372b0df8e36dca9b72fc7ef11321bd2720533</citedby><cites>FETCH-LOGICAL-c459t-206c3ecfaaec54444243bd5251b6372b0df8e36dca9b72fc7ef11321bd2720533</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ijfoodmicro.2011.10.011$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22098923$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Van Poucke, Kris</creatorcontrib><creatorcontrib>Monbaliu, Sofie</creatorcontrib><creatorcontrib>Munaut, Françoise</creatorcontrib><creatorcontrib>Heungens, Kurt</creatorcontrib><creatorcontrib>De Saeger, Sarah</creatorcontrib><creatorcontrib>Van Hove, François</creatorcontrib><title>Genetic diversity and mycotoxin production of Fusarium lactis species complex isolates from sweet pepper</title><title>International journal of food microbiology</title><addtitle>Int J Food Microbiol</addtitle><description>An internal fruit rot disease of sweet peppers was first detected in Belgium in 2003. Research conducted mostly in Canada indicates that this disease is primarily caused by
Fusarium lactis Pirotta. Ninety-eight
Fusarium isolates obtained from diseased sweet peppers from Belgium, as well as from other countries (Canada, the Netherlands and the United Kingdom) were identified by sequencing the translation elongation factor 1α (EF). Of these 98 isolates, 13 were identified as
F. oxysporum Schltdl., nine as
F. proliferatum (Matsush.) Nirenberg and two belonged to clade 3 of the
F. solani species complex. Of the 74 remaining isolates, the EF sequence showed 97% to 98% similarity to
F. lactis. Of these isolates, the β-tubulin (TUB), calmodulin (CAM) and the second largest subunit of RNA polymerase II (
RPB2) genes were also sequenced. Analysis of the combined sequences revealed that the 74 isolates share nine combined sequences that correspond to nine multilocus sequence types (STs), while the
F. lactis neotype strain and one other strain, both isolated from figs, form a separate ST. Together, these 10 STs represent a monophyletic
F. lactis species complex (FLASC).
An unusually high level of genetic diversity was observed between (groups of) these STs. Two of them (ST5 and ST6) fulfilled the criteria for species recognition based on genealogical exclusivity and together represent a new monophyletic species lineage (FLASC-1). The seven other STs, together with the
F. lactis neotype ST, form a paraphyletic species lineage in the African clade of the
Gibberella fujikuroi species complex (GFSC). From each of the 10 STs, the mycotoxin production was assessed using a multi-mycotoxin liquid chromatography mass spectrometry method. Out of the 27 analyzed mycotoxins, beauvericin and fumonisins were detected in sweet pepper tissue and in maize kernels. The 10 STs clearly differed in the amount of mycotoxin produced, but there was only limited congruence between the production profile and the phylogenetic analysis. Furthermore, the morphological characterization (based on mycelial growth rate and the length of macroconidia) showed distinct differences between the 10 STs, but again there was limited congruence with the phylogenetic results. In conclusion, the data presented in this study demonstrate that 75% of the isolates obtained from sweet pepper with internal fruit rot belong to a
F. lactis species complex (FLASC), including a new FLASC-1 monophyletic species, and that the members of this complex display great genetic and phenotypic diversity.
► We describe a
Fusarium lactis species complex (FLASC). ► The majority of isolates from internal fruit rot of sweet pepper belong to this FLASC. ► Within the FLASC, nine multilocus sequence types (STs) were identified. ► The FLASC includes a new monophyletic species, FLASC-1. ► Beauvericin and fumonisin production by FLASC isolates is ST-dependent.</description><subject>Beauvericin</subject><subject>Belgium</subject><subject>Calcium-binding protein</subject><subject>Calmodulin</subject><subject>Calmodulin - genetics</subject><subject>Canada</subject><subject>Capsicum - microbiology</subject><subject>Capsicum annuum</subject><subject>Data processing</subject><subject>DNA-directed RNA polymerase</subject><subject>Evolution</subject><subject>Fruit rot</subject><subject>Fumonisin</subject><subject>Fumonisins</subject><subject>Fusarium</subject><subject>Fusarium - genetics</subject><subject>Fusarium - isolation & purification</subject><subject>Fusarium - metabolism</subject><subject>Fusarium proliferatum</subject><subject>Genetic diversity</subject><subject>Genetic Variation</subject><subject>Gibberella fujikuroi</subject><subject>Growth rate</subject><subject>Internal fruit rot</subject><subject>Kernels</subject><subject>Liquid chromatography</subject><subject>Mass spectroscopy</subject><subject>Molecular Sequence Data</subject><subject>Multilocus Sequence Typing</subject><subject>Mycelia</subject><subject>Mycotoxins</subject><subject>Mycotoxins - analysis</subject><subject>Mycotoxins - biosynthesis</subject><subject>Mycotoxins - genetics</subject><subject>Netherlands</subject><subject>Peptide Elongation Factor 1 - genetics</subject><subject>Phylogeny</subject><subject>RNA Polymerase II - genetics</subject><subject>Sweet taste</subject><subject>Translation elongation</subject><subject>Tubulin</subject><subject>Tubulin - genetics</subject><subject>United Kingdom</subject><subject>Zea mays</subject><subject>Zea mays - genetics</subject><subject>Zea mays - microbiology</subject><issn>0168-1605</issn><issn>1879-3460</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkUtPAyEUhYnRaH38BYMrV1N5dB4sTWPVxMSNrgkDl0gzM4zAqP330lSNO2Vzkst3uZdzELqgZE4Jra7Wc7e23pve6eDnjFCa6_Mse2hGm1oUfFGRfTTLbFPQipRH6DjGNSGk5JwcoiPGiGgE4zP0cgsDJKexcW8QoksbrAaD-432yX-4AY_Bm0kn5wfsLV5NUQU39bhTuRZxHEE7iFj7fuzgA7voO5VywQbf4_gOkPAI4wjhFB1Y1UU4-9IT9Ly6eVreFQ-Pt_fL64dCL0qRCkYqzUFbpUCXi3zYgremZCVtK16zlhjbAK-MVqKtmdU1WEo5o61hNdt-7wRd7t7Ni79OEJPsXdTQdWoAP0UpGKkFJSX9m6Ql4YKzJpNiR2a7Ywxg5Rhcr8JGUiK3ici1_JWI3CayvcqSe8-_pkxtD-an8zuCDCx3AGRX3hwEGbOlgwbjAugkjXf_GPMJjImk1Q</recordid><startdate>20120201</startdate><enddate>20120201</enddate><creator>Van Poucke, Kris</creator><creator>Monbaliu, Sofie</creator><creator>Munaut, Françoise</creator><creator>Heungens, Kurt</creator><creator>De Saeger, Sarah</creator><creator>Van Hove, François</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20120201</creationdate><title>Genetic diversity and mycotoxin production of Fusarium lactis species complex isolates from sweet pepper</title><author>Van Poucke, Kris ; Monbaliu, Sofie ; Munaut, Françoise ; Heungens, Kurt ; De Saeger, Sarah ; Van Hove, François</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c459t-206c3ecfaaec54444243bd5251b6372b0df8e36dca9b72fc7ef11321bd2720533</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Beauvericin</topic><topic>Belgium</topic><topic>Calcium-binding protein</topic><topic>Calmodulin</topic><topic>Calmodulin - genetics</topic><topic>Canada</topic><topic>Capsicum - microbiology</topic><topic>Capsicum annuum</topic><topic>Data processing</topic><topic>DNA-directed RNA polymerase</topic><topic>Evolution</topic><topic>Fruit rot</topic><topic>Fumonisin</topic><topic>Fumonisins</topic><topic>Fusarium</topic><topic>Fusarium - genetics</topic><topic>Fusarium - isolation & purification</topic><topic>Fusarium - metabolism</topic><topic>Fusarium proliferatum</topic><topic>Genetic diversity</topic><topic>Genetic Variation</topic><topic>Gibberella fujikuroi</topic><topic>Growth rate</topic><topic>Internal fruit rot</topic><topic>Kernels</topic><topic>Liquid chromatography</topic><topic>Mass spectroscopy</topic><topic>Molecular Sequence Data</topic><topic>Multilocus Sequence Typing</topic><topic>Mycelia</topic><topic>Mycotoxins</topic><topic>Mycotoxins - analysis</topic><topic>Mycotoxins - biosynthesis</topic><topic>Mycotoxins - genetics</topic><topic>Netherlands</topic><topic>Peptide Elongation Factor 1 - genetics</topic><topic>Phylogeny</topic><topic>RNA Polymerase II - genetics</topic><topic>Sweet taste</topic><topic>Translation elongation</topic><topic>Tubulin</topic><topic>Tubulin - genetics</topic><topic>United Kingdom</topic><topic>Zea mays</topic><topic>Zea mays - genetics</topic><topic>Zea mays - microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Van Poucke, Kris</creatorcontrib><creatorcontrib>Monbaliu, Sofie</creatorcontrib><creatorcontrib>Munaut, Françoise</creatorcontrib><creatorcontrib>Heungens, Kurt</creatorcontrib><creatorcontrib>De Saeger, Sarah</creatorcontrib><creatorcontrib>Van Hove, François</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>International journal of food microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Van Poucke, Kris</au><au>Monbaliu, Sofie</au><au>Munaut, Françoise</au><au>Heungens, Kurt</au><au>De Saeger, Sarah</au><au>Van Hove, François</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity and mycotoxin production of Fusarium lactis species complex isolates from sweet pepper</atitle><jtitle>International journal of food microbiology</jtitle><addtitle>Int J Food Microbiol</addtitle><date>2012-02-01</date><risdate>2012</risdate><volume>153</volume><issue>1</issue><spage>28</spage><epage>37</epage><pages>28-37</pages><issn>0168-1605</issn><eissn>1879-3460</eissn><abstract>An internal fruit rot disease of sweet peppers was first detected in Belgium in 2003. Research conducted mostly in Canada indicates that this disease is primarily caused by
Fusarium lactis Pirotta. Ninety-eight
Fusarium isolates obtained from diseased sweet peppers from Belgium, as well as from other countries (Canada, the Netherlands and the United Kingdom) were identified by sequencing the translation elongation factor 1α (EF). Of these 98 isolates, 13 were identified as
F. oxysporum Schltdl., nine as
F. proliferatum (Matsush.) Nirenberg and two belonged to clade 3 of the
F. solani species complex. Of the 74 remaining isolates, the EF sequence showed 97% to 98% similarity to
F. lactis. Of these isolates, the β-tubulin (TUB), calmodulin (CAM) and the second largest subunit of RNA polymerase II (
RPB2) genes were also sequenced. Analysis of the combined sequences revealed that the 74 isolates share nine combined sequences that correspond to nine multilocus sequence types (STs), while the
F. lactis neotype strain and one other strain, both isolated from figs, form a separate ST. Together, these 10 STs represent a monophyletic
F. lactis species complex (FLASC).
An unusually high level of genetic diversity was observed between (groups of) these STs. Two of them (ST5 and ST6) fulfilled the criteria for species recognition based on genealogical exclusivity and together represent a new monophyletic species lineage (FLASC-1). The seven other STs, together with the
F. lactis neotype ST, form a paraphyletic species lineage in the African clade of the
Gibberella fujikuroi species complex (GFSC). From each of the 10 STs, the mycotoxin production was assessed using a multi-mycotoxin liquid chromatography mass spectrometry method. Out of the 27 analyzed mycotoxins, beauvericin and fumonisins were detected in sweet pepper tissue and in maize kernels. The 10 STs clearly differed in the amount of mycotoxin produced, but there was only limited congruence between the production profile and the phylogenetic analysis. Furthermore, the morphological characterization (based on mycelial growth rate and the length of macroconidia) showed distinct differences between the 10 STs, but again there was limited congruence with the phylogenetic results. In conclusion, the data presented in this study demonstrate that 75% of the isolates obtained from sweet pepper with internal fruit rot belong to a
F. lactis species complex (FLASC), including a new FLASC-1 monophyletic species, and that the members of this complex display great genetic and phenotypic diversity.
► We describe a
Fusarium lactis species complex (FLASC). ► The majority of isolates from internal fruit rot of sweet pepper belong to this FLASC. ► Within the FLASC, nine multilocus sequence types (STs) were identified. ► The FLASC includes a new monophyletic species, FLASC-1. ► Beauvericin and fumonisin production by FLASC isolates is ST-dependent.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>22098923</pmid><doi>10.1016/j.ijfoodmicro.2011.10.011</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
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| ispartof | International journal of food microbiology, 2012-02, Vol.153 (1), p.28-37 |
| issn | 0168-1605 1879-3460 |
| language | eng |
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| source | MEDLINE; Access via ScienceDirect (Elsevier) |
| subjects | Beauvericin Belgium Calcium-binding protein Calmodulin Calmodulin - genetics Canada Capsicum - microbiology Capsicum annuum Data processing DNA-directed RNA polymerase Evolution Fruit rot Fumonisin Fumonisins Fusarium Fusarium - genetics Fusarium - isolation & purification Fusarium - metabolism Fusarium proliferatum Genetic diversity Genetic Variation Gibberella fujikuroi Growth rate Internal fruit rot Kernels Liquid chromatography Mass spectroscopy Molecular Sequence Data Multilocus Sequence Typing Mycelia Mycotoxins Mycotoxins - analysis Mycotoxins - biosynthesis Mycotoxins - genetics Netherlands Peptide Elongation Factor 1 - genetics Phylogeny RNA Polymerase II - genetics Sweet taste Translation elongation Tubulin Tubulin - genetics United Kingdom Zea mays Zea mays - genetics Zea mays - microbiology |
| title | Genetic diversity and mycotoxin production of Fusarium lactis species complex isolates from sweet pepper |
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