Alkalibacterium subtropicum sp. nov., a slightly halophilic and alkaliphilic marine lactic acid bacterium isolated from decaying marine algae
Two novel strains of marine lactic acid bacteria, isolated from decaying marine algae collected from a subtropical area of Japan, are described. The isolates, designated O24-2T and O25-2, were Gram-positive, non-sporulating and non-motile. They lacked catalase and quinones. Under anaerobic cultivati...
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description | Two novel strains of marine lactic acid bacteria, isolated from decaying marine algae collected from a subtropical area of Japan, are described. The isolates, designated O24-2T and O25-2, were Gram-positive, non-sporulating and non-motile. They lacked catalase and quinones. Under anaerobic cultivation conditions, lactate was produced from glucose with the production of formate, acetate and ethanol in a molar ratio of approximately 2 : 1 : 1. Under aerobic cultivation conditions, acetate and lactate were produced from carbohydrates and related compounds. The isolates were slightly halophilic, highly halotolerant and alkaliphilic. They were able to grow in 0–17.0 % (w/v) NaCl, with optimum growth of strains O24-2T and O25-2 at 1.0–3.0 and 1.0–2.0 % (w/v) NaCl, respectively. Growth of strain O24-2T was observed at pH 7.5–9.5, with optimum growth at pH 8.0–8.5. Comparative 16S rRNA gene sequence analysis revealed that the isolates occupied a phylogenetic position within the genus Alkalibacterium, showing highest similarity (99.6 %) to Alkalibacterium putridalgicola T129-2-1T. Although sequence similarity was high, the DNA–DNA relatedness value between strain O24-2T and A. putridalgicola T129-2-1T was 27 %, indicating that they are members of distinct species. The DNA G+C contents of O24-2T and O25-2 were 43.7 and 44.4 mol%, respectively, and DNA–DNA relatedness between the isolates was 89 %. The cell-wall peptidoglycan was type A4β, Orn-D-Asp. The major cellular fatty acid components were C14 : 0, C16 : 0 and C16 : 1ω9c. Based on phenotypic characteristics and genetic distinctiveness, the isolates were classified as representatives of a novel species within the genus Alkalibacterium, for which the name Alkalibacterium subtropicum sp. nov. is proposed; the type strain is O24-2T ( = DSM 23664T = NBRC 107172T). |
doi_str_mv | 10.1099/ijs.0.027953-0 |
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The isolates, designated O24-2T and O25-2, were Gram-positive, non-sporulating and non-motile. They lacked catalase and quinones. Under anaerobic cultivation conditions, lactate was produced from glucose with the production of formate, acetate and ethanol in a molar ratio of approximately 2 : 1 : 1. Under aerobic cultivation conditions, acetate and lactate were produced from carbohydrates and related compounds. The isolates were slightly halophilic, highly halotolerant and alkaliphilic. They were able to grow in 0–17.0 % (w/v) NaCl, with optimum growth of strains O24-2T and O25-2 at 1.0–3.0 and 1.0–2.0 % (w/v) NaCl, respectively. Growth of strain O24-2T was observed at pH 7.5–9.5, with optimum growth at pH 8.0–8.5. Comparative 16S rRNA gene sequence analysis revealed that the isolates occupied a phylogenetic position within the genus Alkalibacterium, showing highest similarity (99.6 %) to Alkalibacterium putridalgicola T129-2-1T. Although sequence similarity was high, the DNA–DNA relatedness value between strain O24-2T and A. putridalgicola T129-2-1T was 27 %, indicating that they are members of distinct species. The DNA G+C contents of O24-2T and O25-2 were 43.7 and 44.4 mol%, respectively, and DNA–DNA relatedness between the isolates was 89 %. The cell-wall peptidoglycan was type A4β, Orn-D-Asp. The major cellular fatty acid components were C14 : 0, C16 : 0 and C16 : 1ω9c. Based on phenotypic characteristics and genetic distinctiveness, the isolates were classified as representatives of a novel species within the genus Alkalibacterium, for which the name Alkalibacterium subtropicum sp. nov. is proposed; the type strain is O24-2T ( = DSM 23664T = NBRC 107172T).</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.027953-0</identifier><identifier>PMID: 21296925</identifier><language>eng</language><publisher>Reading: International Union of Microbiological Societies</publisher><subject>acetates ; Algae ; Alkalibacterium ; Alkalies - metabolism ; Animal, plant and microbial ecology ; Bacteriology ; Biological and medical sciences ; catalase ; DNA ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; ethanol ; fatty acids ; Fundamental and applied biological sciences. Psychology ; genes ; glucose ; Lactic Acid - metabolism ; lactic acid bacteria ; Lactobacillales - classification ; Lactobacillales - genetics ; Lactobacillales - isolation & purification ; Lactobacillales - metabolism ; Microbial ecology ; Microbiology ; Molecular Sequence Data ; new species ; nucleotide sequences ; peptidoglycans ; Phaeophyceae - microbiology ; Phylogeny ; quinones ; Rhodophyta - microbiology ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; salt tolerance ; Seawater - microbiology ; sequence homology ; sodium chloride ; Sodium Chloride - metabolism ; Systematics ; Various environments (extraatmospheric space, air, water)</subject><ispartof>International journal of systematic and evolutionary microbiology, 2011-12, Vol.61 (Pt 12), p.2996-3002</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c454t-abfac6e3ce202f2ca7dbedaa1f750a7e7b3f0caf0f0b9cecae45dc85d0d994583</citedby><cites>FETCH-LOGICAL-c454t-abfac6e3ce202f2ca7dbedaa1f750a7e7b3f0caf0f0b9cecae45dc85d0d994583</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25288981$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21296925$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ishikawa, Morio</creatorcontrib><creatorcontrib>Nakajima, Kazuyuki</creatorcontrib><creatorcontrib>Ishizaki, Shihomi</creatorcontrib><creatorcontrib>Kodama, Kayo</creatorcontrib><creatorcontrib>Okamoto-Kainuma, Akiko</creatorcontrib><creatorcontrib>Koizumi, Yukimichi</creatorcontrib><creatorcontrib>Yamamoto, Yasushi</creatorcontrib><creatorcontrib>Yamasato, Kazuhide</creatorcontrib><title>Alkalibacterium subtropicum sp. nov., a slightly halophilic and alkaliphilic marine lactic acid bacterium isolated from decaying marine algae</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Two novel strains of marine lactic acid bacteria, isolated from decaying marine algae collected from a subtropical area of Japan, are described. The isolates, designated O24-2T and O25-2, were Gram-positive, non-sporulating and non-motile. They lacked catalase and quinones. Under anaerobic cultivation conditions, lactate was produced from glucose with the production of formate, acetate and ethanol in a molar ratio of approximately 2 : 1 : 1. Under aerobic cultivation conditions, acetate and lactate were produced from carbohydrates and related compounds. The isolates were slightly halophilic, highly halotolerant and alkaliphilic. They were able to grow in 0–17.0 % (w/v) NaCl, with optimum growth of strains O24-2T and O25-2 at 1.0–3.0 and 1.0–2.0 % (w/v) NaCl, respectively. Growth of strain O24-2T was observed at pH 7.5–9.5, with optimum growth at pH 8.0–8.5. Comparative 16S rRNA gene sequence analysis revealed that the isolates occupied a phylogenetic position within the genus Alkalibacterium, showing highest similarity (99.6 %) to Alkalibacterium putridalgicola T129-2-1T. Although sequence similarity was high, the DNA–DNA relatedness value between strain O24-2T and A. putridalgicola T129-2-1T was 27 %, indicating that they are members of distinct species. The DNA G+C contents of O24-2T and O25-2 were 43.7 and 44.4 mol%, respectively, and DNA–DNA relatedness between the isolates was 89 %. The cell-wall peptidoglycan was type A4β, Orn-D-Asp. The major cellular fatty acid components were C14 : 0, C16 : 0 and C16 : 1ω9c. Based on phenotypic characteristics and genetic distinctiveness, the isolates were classified as representatives of a novel species within the genus Alkalibacterium, for which the name Alkalibacterium subtropicum sp. nov. is proposed; the type strain is O24-2T ( = DSM 23664T = NBRC 107172T).</description><subject>acetates</subject><subject>Algae</subject><subject>Alkalibacterium</subject><subject>Alkalies - metabolism</subject><subject>Animal, plant and microbial ecology</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>catalase</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>ethanol</subject><subject>fatty acids</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>genes</subject><subject>glucose</subject><subject>Lactic Acid - metabolism</subject><subject>lactic acid bacteria</subject><subject>Lactobacillales - classification</subject><subject>Lactobacillales - genetics</subject><subject>Lactobacillales - isolation & purification</subject><subject>Lactobacillales - metabolism</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>new species</subject><subject>nucleotide sequences</subject><subject>peptidoglycans</subject><subject>Phaeophyceae - microbiology</subject><subject>Phylogeny</subject><subject>quinones</subject><subject>Rhodophyta - microbiology</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>salt tolerance</subject><subject>Seawater - microbiology</subject><subject>sequence homology</subject><subject>sodium chloride</subject><subject>Sodium Chloride - metabolism</subject><subject>Systematics</subject><subject>Various environments (extraatmospheric space, air, water)</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkUtv1TAQhS0EoqWwZQneIDYkjJM4iZdVxUuqxAK6tiZ-3OvixMFOKt0fwX_Gt7mlrGY0_s4Zaw4hrxmUDIT46G5TCSVUneB1AU_IOWvatuBQN0__68_Ii5RuAfIA4Dk5q1glWlHxc_Ln0v9C7wZUi4luHWlahyWG2aljP5d0CnflB4o0ebfbL_5A9-jDvHfeKYqTpnivPw1GjG4y1Ge347Nymj46uxQ8LkZTG8NItVF4cNPuQYN-h-YleWbRJ_PqVC_IzedPP6--Ftffv3y7urwuVMObpcDBompNrUwFla0UdnowGpHZjgN2phtqCwotWBiEyotMw7XquQYtRMP7-oK833znGH6vJi1ydEkZ73EyYU1SMCbqFu7JciNVDClFY-UcXf7yQTKQxwRkTkCC3BKQkAVvTtbrMBr9D384eQbenQBMCr2NOCmXHjle9b3oWebebpzFIHEXM3PzowLGtxh5V_8Fu8-ciw</recordid><startdate>20111201</startdate><enddate>20111201</enddate><creator>Ishikawa, Morio</creator><creator>Nakajima, Kazuyuki</creator><creator>Ishizaki, Shihomi</creator><creator>Kodama, Kayo</creator><creator>Okamoto-Kainuma, Akiko</creator><creator>Koizumi, Yukimichi</creator><creator>Yamamoto, Yasushi</creator><creator>Yamasato, Kazuhide</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20111201</creationdate><title>Alkalibacterium subtropicum sp. nov., a slightly halophilic and alkaliphilic marine lactic acid bacterium isolated from decaying marine algae</title><author>Ishikawa, Morio ; Nakajima, Kazuyuki ; Ishizaki, Shihomi ; Kodama, Kayo ; Okamoto-Kainuma, Akiko ; Koizumi, Yukimichi ; Yamamoto, Yasushi ; Yamasato, Kazuhide</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c454t-abfac6e3ce202f2ca7dbedaa1f750a7e7b3f0caf0f0b9cecae45dc85d0d994583</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>acetates</topic><topic>Algae</topic><topic>Alkalibacterium</topic><topic>Alkalies - metabolism</topic><topic>Animal, plant and microbial ecology</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>catalase</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>ethanol</topic><topic>fatty acids</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>genes</topic><topic>glucose</topic><topic>Lactic Acid - metabolism</topic><topic>lactic acid bacteria</topic><topic>Lactobacillales - classification</topic><topic>Lactobacillales - genetics</topic><topic>Lactobacillales - isolation & purification</topic><topic>Lactobacillales - metabolism</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>new species</topic><topic>nucleotide sequences</topic><topic>peptidoglycans</topic><topic>Phaeophyceae - microbiology</topic><topic>Phylogeny</topic><topic>quinones</topic><topic>Rhodophyta - microbiology</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>salt tolerance</topic><topic>Seawater - microbiology</topic><topic>sequence homology</topic><topic>sodium chloride</topic><topic>Sodium Chloride - metabolism</topic><topic>Systematics</topic><topic>Various environments (extraatmospheric space, air, water)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ishikawa, Morio</creatorcontrib><creatorcontrib>Nakajima, Kazuyuki</creatorcontrib><creatorcontrib>Ishizaki, Shihomi</creatorcontrib><creatorcontrib>Kodama, Kayo</creatorcontrib><creatorcontrib>Okamoto-Kainuma, Akiko</creatorcontrib><creatorcontrib>Koizumi, Yukimichi</creatorcontrib><creatorcontrib>Yamamoto, Yasushi</creatorcontrib><creatorcontrib>Yamasato, Kazuhide</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ishikawa, Morio</au><au>Nakajima, Kazuyuki</au><au>Ishizaki, Shihomi</au><au>Kodama, Kayo</au><au>Okamoto-Kainuma, Akiko</au><au>Koizumi, Yukimichi</au><au>Yamamoto, Yasushi</au><au>Yamasato, Kazuhide</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Alkalibacterium subtropicum sp. nov., a slightly halophilic and alkaliphilic marine lactic acid bacterium isolated from decaying marine algae</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2011-12-01</date><risdate>2011</risdate><volume>61</volume><issue>Pt 12</issue><spage>2996</spage><epage>3002</epage><pages>2996-3002</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Two novel strains of marine lactic acid bacteria, isolated from decaying marine algae collected from a subtropical area of Japan, are described. The isolates, designated O24-2T and O25-2, were Gram-positive, non-sporulating and non-motile. They lacked catalase and quinones. Under anaerobic cultivation conditions, lactate was produced from glucose with the production of formate, acetate and ethanol in a molar ratio of approximately 2 : 1 : 1. Under aerobic cultivation conditions, acetate and lactate were produced from carbohydrates and related compounds. The isolates were slightly halophilic, highly halotolerant and alkaliphilic. They were able to grow in 0–17.0 % (w/v) NaCl, with optimum growth of strains O24-2T and O25-2 at 1.0–3.0 and 1.0–2.0 % (w/v) NaCl, respectively. Growth of strain O24-2T was observed at pH 7.5–9.5, with optimum growth at pH 8.0–8.5. Comparative 16S rRNA gene sequence analysis revealed that the isolates occupied a phylogenetic position within the genus Alkalibacterium, showing highest similarity (99.6 %) to Alkalibacterium putridalgicola T129-2-1T. Although sequence similarity was high, the DNA–DNA relatedness value between strain O24-2T and A. putridalgicola T129-2-1T was 27 %, indicating that they are members of distinct species. The DNA G+C contents of O24-2T and O25-2 were 43.7 and 44.4 mol%, respectively, and DNA–DNA relatedness between the isolates was 89 %. The cell-wall peptidoglycan was type A4β, Orn-D-Asp. The major cellular fatty acid components were C14 : 0, C16 : 0 and C16 : 1ω9c. Based on phenotypic characteristics and genetic distinctiveness, the isolates were classified as representatives of a novel species within the genus Alkalibacterium, for which the name Alkalibacterium subtropicum sp. nov. is proposed; the type strain is O24-2T ( = DSM 23664T = NBRC 107172T).</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>21296925</pmid><doi>10.1099/ijs.0.027953-0</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | acetates Algae Alkalibacterium Alkalies - metabolism Animal, plant and microbial ecology Bacteriology Biological and medical sciences catalase DNA DNA, Bacterial - genetics DNA, Ribosomal - genetics ethanol fatty acids Fundamental and applied biological sciences. Psychology genes glucose Lactic Acid - metabolism lactic acid bacteria Lactobacillales - classification Lactobacillales - genetics Lactobacillales - isolation & purification Lactobacillales - metabolism Microbial ecology Microbiology Molecular Sequence Data new species nucleotide sequences peptidoglycans Phaeophyceae - microbiology Phylogeny quinones Rhodophyta - microbiology ribosomal RNA RNA, Ribosomal, 16S - genetics salt tolerance Seawater - microbiology sequence homology sodium chloride Sodium Chloride - metabolism Systematics Various environments (extraatmospheric space, air, water) |
title | Alkalibacterium subtropicum sp. nov., a slightly halophilic and alkaliphilic marine lactic acid bacterium isolated from decaying marine algae |
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