HvNax3—a locus controlling shoot sodium exclusion derived from wild barley (Hordeum vulgare ssp. spontaneum)
Previous work identified the wild barley (Hordeum vulgare ssp. spontaneum) accession CPI-71284-48 as being capable of limiting sodium (Na⁺) accumulation in the shoots under saline hydroponic growth conditions. Quantitative trait locus (QTL) analysis using a cross between CPI-71284-48 and a selection...
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| Veröffentlicht in: | Functional & integrative genomics 2010-05, Vol.10 (2), p.277-291 |
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| creator | Shavrukov, Yuri Gupta, Narendra K Miyazaki, Junji Baho, Manahil N Chalmers, Kenneth J Tester, Mark Langridge, Peter Collins, Nicholas C |
| description | Previous work identified the wild barley (Hordeum vulgare ssp. spontaneum) accession CPI-71284-48 as being capable of limiting sodium (Na⁺) accumulation in the shoots under saline hydroponic growth conditions. Quantitative trait locus (QTL) analysis using a cross between CPI-71284-48 and a selection of the cultivated barley (H. vulgare ssp. vulgare) cultivar Barque (Barque-73, a moderate Na⁺ excluder) attributed the control of the Na⁺ exclusion trait from CPI-71284-48 to a single locus on the short arm of chromosome 7H, which was named HvNax3. The locus reduced shoot Na⁺ accumulation by 10-25% in plants grown in 150 mM NaCl. Markers generated using colinearity with rice and Brachypodium, together with the analysis of introgression lines and F₂ and F₃ families, enabled HvNax3 to be mapped to a 1.3-cM interval. Genes from the corresponding rice and Brachypodium intervals encode 16 different classes of proteins and include several plausible candidates for HvNax3. The potential of HvNax3 to provide a useful trait contributing to salinity tolerance in cultivated barley is discussed. |
| doi_str_mv | 10.1007/s10142-009-0153-8 |
| format | Article |
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Quantitative trait locus (QTL) analysis using a cross between CPI-71284-48 and a selection of the cultivated barley (H. vulgare ssp. vulgare) cultivar Barque (Barque-73, a moderate Na⁺ excluder) attributed the control of the Na⁺ exclusion trait from CPI-71284-48 to a single locus on the short arm of chromosome 7H, which was named HvNax3. The locus reduced shoot Na⁺ accumulation by 10-25% in plants grown in 150 mM NaCl. Markers generated using colinearity with rice and Brachypodium, together with the analysis of introgression lines and F₂ and F₃ families, enabled HvNax3 to be mapped to a 1.3-cM interval. Genes from the corresponding rice and Brachypodium intervals encode 16 different classes of proteins and include several plausible candidates for HvNax3. The potential of HvNax3 to provide a useful trait contributing to salinity tolerance in cultivated barley is discussed.</description><identifier>ISSN: 1438-793X</identifier><identifier>EISSN: 1438-7948</identifier><identifier>DOI: 10.1007/s10142-009-0153-8</identifier><identifier>PMID: 20076983</identifier><language>eng</language><publisher>Berlin/Heidelberg: Berlin/Heidelberg : Springer-Verlag</publisher><subject>Animal Genetics and Genomics ; Barley ; Biochemistry ; Bioinformatics ; Biomedical and Life Sciences ; Brachypodium ; Cell Biology ; Chromosome Mapping ; Chromosomes, Plant - genetics ; Crosses, Genetic ; Cultivars ; Gene expression ; Genes, Plant - genetics ; Genetic Markers ; Genomics ; H. vulgare ssp. spontaneum ; Haploidy ; Hordeum - genetics ; Hordeum - metabolism ; Hordeum vulgare ; Life Sciences ; Microbial Genetics and Genomics ; Original Paper ; Oryza - genetics ; Oryza sativa ; Plant Genetics and Genomics ; Plant Shoots - genetics ; Plant Shoots - metabolism ; Proteins ; Pyrophosphatase ; Quantitative Trait Loci - genetics ; Recombination, Genetic - genetics ; Salinity ; Salinity tolerance ; Sodium - metabolism ; Sodium transport</subject><ispartof>Functional & integrative genomics, 2010-05, Vol.10 (2), p.277-291</ispartof><rights>Springer-Verlag 2010</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c492t-16a7162fcf668876059a2a21053b2af95b239b3de476b3ea5c776a8687f512e73</citedby><cites>FETCH-LOGICAL-c492t-16a7162fcf668876059a2a21053b2af95b239b3de476b3ea5c776a8687f512e73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10142-009-0153-8$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10142-009-0153-8$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20076983$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shavrukov, Yuri</creatorcontrib><creatorcontrib>Gupta, Narendra K</creatorcontrib><creatorcontrib>Miyazaki, Junji</creatorcontrib><creatorcontrib>Baho, Manahil N</creatorcontrib><creatorcontrib>Chalmers, Kenneth J</creatorcontrib><creatorcontrib>Tester, Mark</creatorcontrib><creatorcontrib>Langridge, Peter</creatorcontrib><creatorcontrib>Collins, Nicholas C</creatorcontrib><title>HvNax3—a locus controlling shoot sodium exclusion derived from wild barley (Hordeum vulgare ssp. spontaneum)</title><title>Functional & integrative genomics</title><addtitle>Funct Integr Genomics</addtitle><addtitle>Funct Integr Genomics</addtitle><description>Previous work identified the wild barley (Hordeum vulgare ssp. spontaneum) accession CPI-71284-48 as being capable of limiting sodium (Na⁺) accumulation in the shoots under saline hydroponic growth conditions. Quantitative trait locus (QTL) analysis using a cross between CPI-71284-48 and a selection of the cultivated barley (H. vulgare ssp. vulgare) cultivar Barque (Barque-73, a moderate Na⁺ excluder) attributed the control of the Na⁺ exclusion trait from CPI-71284-48 to a single locus on the short arm of chromosome 7H, which was named HvNax3. The locus reduced shoot Na⁺ accumulation by 10-25% in plants grown in 150 mM NaCl. Markers generated using colinearity with rice and Brachypodium, together with the analysis of introgression lines and F₂ and F₃ families, enabled HvNax3 to be mapped to a 1.3-cM interval. Genes from the corresponding rice and Brachypodium intervals encode 16 different classes of proteins and include several plausible candidates for HvNax3. The potential of HvNax3 to provide a useful trait contributing to salinity tolerance in cultivated barley is discussed.</description><subject>Animal Genetics and Genomics</subject><subject>Barley</subject><subject>Biochemistry</subject><subject>Bioinformatics</subject><subject>Biomedical and Life Sciences</subject><subject>Brachypodium</subject><subject>Cell Biology</subject><subject>Chromosome Mapping</subject><subject>Chromosomes, Plant - genetics</subject><subject>Crosses, Genetic</subject><subject>Cultivars</subject><subject>Gene expression</subject><subject>Genes, Plant - genetics</subject><subject>Genetic Markers</subject><subject>Genomics</subject><subject>H. vulgare ssp. spontaneum</subject><subject>Haploidy</subject><subject>Hordeum - genetics</subject><subject>Hordeum - metabolism</subject><subject>Hordeum vulgare</subject><subject>Life Sciences</subject><subject>Microbial Genetics and Genomics</subject><subject>Original Paper</subject><subject>Oryza - genetics</subject><subject>Oryza sativa</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Shoots - genetics</subject><subject>Plant Shoots - metabolism</subject><subject>Proteins</subject><subject>Pyrophosphatase</subject><subject>Quantitative Trait Loci - genetics</subject><subject>Recombination, Genetic - genetics</subject><subject>Salinity</subject><subject>Salinity tolerance</subject><subject>Sodium - metabolism</subject><subject>Sodium transport</subject><issn>1438-793X</issn><issn>1438-7948</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqFkctu1DAUhi0Eohd4ADZgdVO6SPH9sqxG0KlUwQIqsbOcxBlSOfHgMxnaXR-iT8iT1CWlSCxgZcv-_v_Y-hB6RckxJUS_A0qoYBUhtiJU8so8QbtUcFNpK8zTxz3_uoP2AC4JIZJY_hztsJJW1vBdNC63H_0V_3lz63FMzQS4SeMmpxj7cYXhW0obDKntpwGHqyZO0KcRtyH329DiLqcB_-hji2ufY7jGb5cpt6Gw2ymufA4YYH2MYV0q_VjOj16gZ52PEF4-rPvo4sP7L4tldf7p9Gxxcl41wrJNRZXXVLGu6ZQyRisirWeeUSJ5zXxnZc24rXkbhFY1D142WitvlNGdpCxovo8O5951Tt-nABs39NCEGMsz0gTOUqKEplb-l9ScGytm8uAv8jJNeSzfcIxaK4X5BdEZanICyKFz69wPPl87Sty9NDdLc0Wau5fmTMm8fiie6iG0j4nflgrAZgDK1bgK-c_kf7W-mUOdT86vcg_u4jMjlBNquGVC8TtvK6uR</recordid><startdate>20100501</startdate><enddate>20100501</enddate><creator>Shavrukov, Yuri</creator><creator>Gupta, Narendra K</creator><creator>Miyazaki, Junji</creator><creator>Baho, Manahil N</creator><creator>Chalmers, Kenneth J</creator><creator>Tester, Mark</creator><creator>Langridge, Peter</creator><creator>Collins, Nicholas C</creator><general>Berlin/Heidelberg : Springer-Verlag</general><general>Springer-Verlag</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PADUT</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20100501</creationdate><title>HvNax3—a locus controlling shoot sodium exclusion derived from wild barley (Hordeum vulgare ssp. spontaneum)</title><author>Shavrukov, Yuri ; Gupta, Narendra K ; Miyazaki, Junji ; Baho, Manahil N ; Chalmers, Kenneth J ; Tester, Mark ; Langridge, Peter ; Collins, Nicholas C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c492t-16a7162fcf668876059a2a21053b2af95b239b3de476b3ea5c776a8687f512e73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Animal Genetics and Genomics</topic><topic>Barley</topic><topic>Biochemistry</topic><topic>Bioinformatics</topic><topic>Biomedical and Life Sciences</topic><topic>Brachypodium</topic><topic>Cell Biology</topic><topic>Chromosome Mapping</topic><topic>Chromosomes, Plant - 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Academic</collection><jtitle>Functional & integrative genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shavrukov, Yuri</au><au>Gupta, Narendra K</au><au>Miyazaki, Junji</au><au>Baho, Manahil N</au><au>Chalmers, Kenneth J</au><au>Tester, Mark</au><au>Langridge, Peter</au><au>Collins, Nicholas C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>HvNax3—a locus controlling shoot sodium exclusion derived from wild barley (Hordeum vulgare ssp. spontaneum)</atitle><jtitle>Functional & integrative genomics</jtitle><stitle>Funct Integr Genomics</stitle><addtitle>Funct Integr Genomics</addtitle><date>2010-05-01</date><risdate>2010</risdate><volume>10</volume><issue>2</issue><spage>277</spage><epage>291</epage><pages>277-291</pages><issn>1438-793X</issn><eissn>1438-7948</eissn><abstract>Previous work identified the wild barley (Hordeum vulgare ssp. spontaneum) accession CPI-71284-48 as being capable of limiting sodium (Na⁺) accumulation in the shoots under saline hydroponic growth conditions. Quantitative trait locus (QTL) analysis using a cross between CPI-71284-48 and a selection of the cultivated barley (H. vulgare ssp. vulgare) cultivar Barque (Barque-73, a moderate Na⁺ excluder) attributed the control of the Na⁺ exclusion trait from CPI-71284-48 to a single locus on the short arm of chromosome 7H, which was named HvNax3. The locus reduced shoot Na⁺ accumulation by 10-25% in plants grown in 150 mM NaCl. Markers generated using colinearity with rice and Brachypodium, together with the analysis of introgression lines and F₂ and F₃ families, enabled HvNax3 to be mapped to a 1.3-cM interval. Genes from the corresponding rice and Brachypodium intervals encode 16 different classes of proteins and include several plausible candidates for HvNax3. The potential of HvNax3 to provide a useful trait contributing to salinity tolerance in cultivated barley is discussed.</abstract><cop>Berlin/Heidelberg</cop><pub>Berlin/Heidelberg : Springer-Verlag</pub><pmid>20076983</pmid><doi>10.1007/s10142-009-0153-8</doi><tpages>15</tpages></addata></record> |
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| subjects | Animal Genetics and Genomics Barley Biochemistry Bioinformatics Biomedical and Life Sciences Brachypodium Cell Biology Chromosome Mapping Chromosomes, Plant - genetics Crosses, Genetic Cultivars Gene expression Genes, Plant - genetics Genetic Markers Genomics H. vulgare ssp. spontaneum Haploidy Hordeum - genetics Hordeum - metabolism Hordeum vulgare Life Sciences Microbial Genetics and Genomics Original Paper Oryza - genetics Oryza sativa Plant Genetics and Genomics Plant Shoots - genetics Plant Shoots - metabolism Proteins Pyrophosphatase Quantitative Trait Loci - genetics Recombination, Genetic - genetics Salinity Salinity tolerance Sodium - metabolism Sodium transport |
| title | HvNax3—a locus controlling shoot sodium exclusion derived from wild barley (Hordeum vulgare ssp. spontaneum) |
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