Structures of N,N-Dialkoxyamides: Pyramidal Anomeric Amides with Low Amidicity
The first X-ray structures of two anomeric N,N-dialkoxyamides (2 and 3) have been obtained, which confirm that they are highly pyramidalized at nitrogen and have long N–CO bonds, a characteristic of other anomeric amides and a consequence of drastically reduced amidicity. The crystals also demonstra...
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Veröffentlicht in: | Journal of organic chemistry 2011-12, Vol.76 (23), p.9757-9763 |
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creator | Glover, Stephen A White, Jonathan M Rosser, Adam A Digianantonio, Katherine M |
description | The first X-ray structures of two anomeric N,N-dialkoxyamides (2 and 3) have been obtained, which confirm that they are highly pyramidalized at nitrogen and have long N–CO bonds, a characteristic of other anomeric amides and a consequence of drastically reduced amidicity. The crystals also demonstrate chirality at the amide nitrogen in the solid state. The structures are well-predicted by density functional calculations using N,N-dimethoxyacetamide as a model. The amidicity of N,N-dimethoxyacetamide has been estimated by two independent methods, COSNAR and a new transamidation method, which give almost identical resonance stabilization energies of −8.6 kcal mol–1 and only 47% that of N,N-dimethylacetamide computed at the same level. The total destabilization is composed of a resonance and an inductive contribution, which we have evaluated separately. The electronegative oxygens at nitrogen are responsible for localization of the nitrogen lone pair on the amide nitrogen, a factor that contributes to a loss of resonance over and above the impact of pyramidalization at nitrogen, as well as the fact that N,N-dimethoxyacetamide is predicted to protonate on the carbonyl oxygen in preference to nitrogen. |
doi_str_mv | 10.1021/jo201856u |
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The crystals also demonstrate chirality at the amide nitrogen in the solid state. The structures are well-predicted by density functional calculations using N,N-dimethoxyacetamide as a model. The amidicity of N,N-dimethoxyacetamide has been estimated by two independent methods, COSNAR and a new transamidation method, which give almost identical resonance stabilization energies of −8.6 kcal mol–1 and only 47% that of N,N-dimethylacetamide computed at the same level. The total destabilization is composed of a resonance and an inductive contribution, which we have evaluated separately. The electronegative oxygens at nitrogen are responsible for localization of the nitrogen lone pair on the amide nitrogen, a factor that contributes to a loss of resonance over and above the impact of pyramidalization at nitrogen, as well as the fact that N,N-dimethoxyacetamide is predicted to protonate on the carbonyl oxygen in preference to nitrogen.</description><identifier>ISSN: 0022-3263</identifier><identifier>EISSN: 1520-6904</identifier><identifier>DOI: 10.1021/jo201856u</identifier><identifier>PMID: 22017195</identifier><identifier>CODEN: JOCEAH</identifier><language>eng</language><publisher>Washington, DC: American Chemical Society</publisher><subject>Aliphatic compounds ; Amides - chemistry ; Chemistry ; Crystallography, X-Ray ; Exact sciences and technology ; Models, Molecular ; Molecular Structure ; Organic chemistry ; Preparations and properties</subject><ispartof>Journal of organic chemistry, 2011-12, Vol.76 (23), p.9757-9763</ispartof><rights>Copyright © 2011 American Chemical Society</rights><rights>2015 INIST-CNRS</rights><rights>2011 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a344t-a3827ba768b8153255c89f6b92877afad5b945792af2fbf5a7860550ee642a333</citedby><cites>FETCH-LOGICAL-a344t-a3827ba768b8153255c89f6b92877afad5b945792af2fbf5a7860550ee642a333</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jo201856u$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jo201856u$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,780,784,2765,27076,27924,27925,56738,56788</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25253653$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22017195$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Glover, Stephen A</creatorcontrib><creatorcontrib>White, Jonathan M</creatorcontrib><creatorcontrib>Rosser, Adam A</creatorcontrib><creatorcontrib>Digianantonio, Katherine M</creatorcontrib><title>Structures of N,N-Dialkoxyamides: Pyramidal Anomeric Amides with Low Amidicity</title><title>Journal of organic chemistry</title><addtitle>J. Org. Chem</addtitle><description>The first X-ray structures of two anomeric N,N-dialkoxyamides (2 and 3) have been obtained, which confirm that they are highly pyramidalized at nitrogen and have long N–CO bonds, a characteristic of other anomeric amides and a consequence of drastically reduced amidicity. The crystals also demonstrate chirality at the amide nitrogen in the solid state. The structures are well-predicted by density functional calculations using N,N-dimethoxyacetamide as a model. The amidicity of N,N-dimethoxyacetamide has been estimated by two independent methods, COSNAR and a new transamidation method, which give almost identical resonance stabilization energies of −8.6 kcal mol–1 and only 47% that of N,N-dimethylacetamide computed at the same level. The total destabilization is composed of a resonance and an inductive contribution, which we have evaluated separately. The electronegative oxygens at nitrogen are responsible for localization of the nitrogen lone pair on the amide nitrogen, a factor that contributes to a loss of resonance over and above the impact of pyramidalization at nitrogen, as well as the fact that N,N-dimethoxyacetamide is predicted to protonate on the carbonyl oxygen in preference to nitrogen.</description><subject>Aliphatic compounds</subject><subject>Amides - chemistry</subject><subject>Chemistry</subject><subject>Crystallography, X-Ray</subject><subject>Exact sciences and technology</subject><subject>Models, Molecular</subject><subject>Molecular Structure</subject><subject>Organic chemistry</subject><subject>Preparations and properties</subject><issn>0022-3263</issn><issn>1520-6904</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpt0FtLwzAYBuAgipvTC_-A9EZEsJom_dLWuzGPMKagXpevWYKZ7TqTlrl_b3ZwuzEXOZCHN-El5DSi1xFl0c2kZjRKQbR7pBsBo6HIaLxPupQyFnImeIccOTehfgDAIekw75Mogy4ZvTW2lU1rlQtqHYyuRuGdwfKr_llgZcbK3QavC7vcYhn0p3WlrJFBf3UVzE3zGQzr-epspGkWx-RAY-nUyWbtkY-H-_fBUzh8eXwe9Ich8jhu_JyypMBEpEUaAWcAMs20KDKWJglqHEORxZBkDDXThQZMUuG_TpUSMUPOeY9crHNntv5ulWvyyjipyhKnqm5dnlEBIDjLvLxcS2lr56zS-cyaCu0ij2i-bC_ftuft2Sa1LSo13sq_ujw43wB0EkttcSqN2zlgwAXwnUPpfH5rp76Mfx78BaZHgcE</recordid><startdate>20111202</startdate><enddate>20111202</enddate><creator>Glover, Stephen A</creator><creator>White, Jonathan M</creator><creator>Rosser, Adam A</creator><creator>Digianantonio, Katherine M</creator><general>American Chemical Society</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20111202</creationdate><title>Structures of N,N-Dialkoxyamides: Pyramidal Anomeric Amides with Low Amidicity</title><author>Glover, Stephen A ; White, Jonathan M ; Rosser, Adam A ; Digianantonio, Katherine M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a344t-a3827ba768b8153255c89f6b92877afad5b945792af2fbf5a7860550ee642a333</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Aliphatic compounds</topic><topic>Amides - chemistry</topic><topic>Chemistry</topic><topic>Crystallography, X-Ray</topic><topic>Exact sciences and technology</topic><topic>Models, Molecular</topic><topic>Molecular Structure</topic><topic>Organic chemistry</topic><topic>Preparations and properties</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Glover, Stephen A</creatorcontrib><creatorcontrib>White, Jonathan M</creatorcontrib><creatorcontrib>Rosser, Adam A</creatorcontrib><creatorcontrib>Digianantonio, Katherine M</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of organic chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Glover, Stephen A</au><au>White, Jonathan M</au><au>Rosser, Adam A</au><au>Digianantonio, Katherine M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structures of N,N-Dialkoxyamides: Pyramidal Anomeric Amides with Low Amidicity</atitle><jtitle>Journal of organic chemistry</jtitle><addtitle>J. Org. Chem</addtitle><date>2011-12-02</date><risdate>2011</risdate><volume>76</volume><issue>23</issue><spage>9757</spage><epage>9763</epage><pages>9757-9763</pages><issn>0022-3263</issn><eissn>1520-6904</eissn><coden>JOCEAH</coden><abstract>The first X-ray structures of two anomeric N,N-dialkoxyamides (2 and 3) have been obtained, which confirm that they are highly pyramidalized at nitrogen and have long N–CO bonds, a characteristic of other anomeric amides and a consequence of drastically reduced amidicity. The crystals also demonstrate chirality at the amide nitrogen in the solid state. The structures are well-predicted by density functional calculations using N,N-dimethoxyacetamide as a model. The amidicity of N,N-dimethoxyacetamide has been estimated by two independent methods, COSNAR and a new transamidation method, which give almost identical resonance stabilization energies of −8.6 kcal mol–1 and only 47% that of N,N-dimethylacetamide computed at the same level. The total destabilization is composed of a resonance and an inductive contribution, which we have evaluated separately. The electronegative oxygens at nitrogen are responsible for localization of the nitrogen lone pair on the amide nitrogen, a factor that contributes to a loss of resonance over and above the impact of pyramidalization at nitrogen, as well as the fact that N,N-dimethoxyacetamide is predicted to protonate on the carbonyl oxygen in preference to nitrogen.</abstract><cop>Washington, DC</cop><pub>American Chemical Society</pub><pmid>22017195</pmid><doi>10.1021/jo201856u</doi><tpages>7</tpages></addata></record> |
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subjects | Aliphatic compounds Amides - chemistry Chemistry Crystallography, X-Ray Exact sciences and technology Models, Molecular Molecular Structure Organic chemistry Preparations and properties |
title | Structures of N,N-Dialkoxyamides: Pyramidal Anomeric Amides with Low Amidicity |
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