Transcriptional analysis of the tomato resistance response triggered by recognition of the Xanthomonas type III effector AvrXv3
The type III effector AvrXv3 from Xanthomonas campestris pv. vesicatoria (Xcv) elicits a resistance response in the tomato line Hawaii 7981. To test whether similar genes participate in responses triggered by recognition of different avirulence proteins, we examined the effect of AvrXv3 expression o...
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| Veröffentlicht in: | Functional & integrative genomics 2007-10, Vol.7 (4), p.305-316 |
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| creator | Balaji, Vasudevan Gibly, Avi Debbie, Paul Sessa, Guido |
| description | The type III effector AvrXv3 from Xanthomonas campestris pv. vesicatoria (Xcv) elicits a resistance response in the tomato line Hawaii 7981. To test whether similar genes participate in responses triggered by recognition of different avirulence proteins, we examined the effect of AvrXv3 expression on the plant transcriptome as compared to that of other avirulence proteins. By microarray analysis we monitored expression of approximately 8,600 tomato genes upon inoculation with isogenic Xcv strains differing only by the avrXv3 gene. Changes in transcript levels of 139 genes were observed within 8 h, and a massive shift in expression of 1,294 genes was detected at 12 h. Recognition of AvrXv3 modulated a large number of genes encoding transcription factors and signaling components. In addition, genes involved in defense and stress responses, lipid metabolism, protein degradation, and secondary metabolism were mainly up-regulated. Conversely, genes related to photosynthesis and protein synthesis were generally down-regulated. Many novel genes encoding proteins of unknown function were also identified. A comparison between AvrXv3-modulated genes and those differentially expressed in tomato plants recognizing other bacterial effectors revealed partial overlap and similar distribution in functional classes. The identification of tomato genes modulated by AvrXv3 expression paves the way for dissecting defense networks activated by recognition of this effector in resistant plants. |
| doi_str_mv | 10.1007/s10142-007-0050-y |
| format | Article |
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To test whether similar genes participate in responses triggered by recognition of different avirulence proteins, we examined the effect of AvrXv3 expression on the plant transcriptome as compared to that of other avirulence proteins. By microarray analysis we monitored expression of approximately 8,600 tomato genes upon inoculation with isogenic Xcv strains differing only by the avrXv3 gene. Changes in transcript levels of 139 genes were observed within 8 h, and a massive shift in expression of 1,294 genes was detected at 12 h. Recognition of AvrXv3 modulated a large number of genes encoding transcription factors and signaling components. In addition, genes involved in defense and stress responses, lipid metabolism, protein degradation, and secondary metabolism were mainly up-regulated. Conversely, genes related to photosynthesis and protein synthesis were generally down-regulated. Many novel genes encoding proteins of unknown function were also identified. A comparison between AvrXv3-modulated genes and those differentially expressed in tomato plants recognizing other bacterial effectors revealed partial overlap and similar distribution in functional classes. The identification of tomato genes modulated by AvrXv3 expression paves the way for dissecting defense networks activated by recognition of this effector in resistant plants.</description><identifier>ISSN: 1438-793X</identifier><identifier>EISSN: 1438-7948</identifier><identifier>DOI: 10.1007/s10142-007-0050-y</identifier><identifier>PMID: 17582538</identifier><language>eng</language><publisher>Heidelberg: Berlin/Heidelberg : Springer-Verlag</publisher><subject>AvrXv3 ; Bacterial Proteins - genetics ; Biological and medical sciences ; Cellular stress response ; Crops ; disease resistance ; DNA microarrays ; Fundamental and applied biological sciences. Psychology ; Gene expression ; Gene Expression Profiling ; Gene Expression Regulation, Plant ; Genes ; Genes, Bacterial ; Genes, Plant ; Genomics ; Inoculation ; Lipid metabolism ; Lycopersicon esculentum ; Lycopersicon esculentum - genetics ; Lycopersicon esculentum - metabolism ; Lycopersicon esculentum - microbiology ; Metabolism ; Models, Biological ; Molecular and cellular biology ; Molecular genetics ; Oligonucleotide Array Sequence Analysis ; Photosynthesis ; Plant bacterial diseases ; Plant Diseases - genetics ; Plant Diseases - microbiology ; Plant resistance ; Protein biosynthesis ; Protein turnover ; Proteins ; Tomatoes ; Trans-Activators - genetics ; Transcription factors ; Transcriptomes ; Xanthomonas ; Xanthomonas campestris ; Xanthomonas campestris - genetics ; Xanthomonas campestris - pathogenicity ; Xanthomonas campestris pv. vesicatoria</subject><ispartof>Functional & integrative genomics, 2007-10, Vol.7 (4), p.305-316</ispartof><rights>2007 INIST-CNRS</rights><rights>Springer-Verlag 2007</rights><rights>Springer-Verlag 2007.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c440t-ae0bb65452ce2852ae225db3340b28c1f76d31a867bce78fb284a3f81673fe843</citedby><cites>FETCH-LOGICAL-c440t-ae0bb65452ce2852ae225db3340b28c1f76d31a867bce78fb284a3f81673fe843</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=19075393$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17582538$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Balaji, Vasudevan</creatorcontrib><creatorcontrib>Gibly, Avi</creatorcontrib><creatorcontrib>Debbie, Paul</creatorcontrib><creatorcontrib>Sessa, Guido</creatorcontrib><title>Transcriptional analysis of the tomato resistance response triggered by recognition of the Xanthomonas type III effector AvrXv3</title><title>Functional & integrative genomics</title><addtitle>Funct Integr Genomics</addtitle><description>The type III effector AvrXv3 from Xanthomonas campestris pv. vesicatoria (Xcv) elicits a resistance response in the tomato line Hawaii 7981. To test whether similar genes participate in responses triggered by recognition of different avirulence proteins, we examined the effect of AvrXv3 expression on the plant transcriptome as compared to that of other avirulence proteins. By microarray analysis we monitored expression of approximately 8,600 tomato genes upon inoculation with isogenic Xcv strains differing only by the avrXv3 gene. Changes in transcript levels of 139 genes were observed within 8 h, and a massive shift in expression of 1,294 genes was detected at 12 h. Recognition of AvrXv3 modulated a large number of genes encoding transcription factors and signaling components. In addition, genes involved in defense and stress responses, lipid metabolism, protein degradation, and secondary metabolism were mainly up-regulated. Conversely, genes related to photosynthesis and protein synthesis were generally down-regulated. Many novel genes encoding proteins of unknown function were also identified. A comparison between AvrXv3-modulated genes and those differentially expressed in tomato plants recognizing other bacterial effectors revealed partial overlap and similar distribution in functional classes. The identification of tomato genes modulated by AvrXv3 expression paves the way for dissecting defense networks activated by recognition of this effector in resistant plants.</description><subject>AvrXv3</subject><subject>Bacterial Proteins - genetics</subject><subject>Biological and medical sciences</subject><subject>Cellular stress response</subject><subject>Crops</subject><subject>disease resistance</subject><subject>DNA microarrays</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes</subject><subject>Genes, Bacterial</subject><subject>Genes, Plant</subject><subject>Genomics</subject><subject>Inoculation</subject><subject>Lipid metabolism</subject><subject>Lycopersicon esculentum</subject><subject>Lycopersicon esculentum - genetics</subject><subject>Lycopersicon esculentum - metabolism</subject><subject>Lycopersicon esculentum - microbiology</subject><subject>Metabolism</subject><subject>Models, Biological</subject><subject>Molecular and cellular biology</subject><subject>Molecular genetics</subject><subject>Oligonucleotide Array Sequence Analysis</subject><subject>Photosynthesis</subject><subject>Plant bacterial diseases</subject><subject>Plant Diseases - genetics</subject><subject>Plant Diseases - microbiology</subject><subject>Plant resistance</subject><subject>Protein biosynthesis</subject><subject>Protein turnover</subject><subject>Proteins</subject><subject>Tomatoes</subject><subject>Trans-Activators - genetics</subject><subject>Transcription factors</subject><subject>Transcriptomes</subject><subject>Xanthomonas</subject><subject>Xanthomonas campestris</subject><subject>Xanthomonas campestris - genetics</subject><subject>Xanthomonas campestris - pathogenicity</subject><subject>Xanthomonas campestris pv. vesicatoria</subject><issn>1438-793X</issn><issn>1438-7948</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp90U1v1DAQBuAIgWgp_AAuYBUBp8D4I7ZzrCo-VqrEgVbam-V47W2qJF5sb6Wc-OtMtAuVkOAQZzR-Zg5-q-olhQ8UQH3MFKhgNZb4NVDPj6pTKriuVSv04z81X59Uz3K-gwW1_Gl1QlWjWcP1afXzOtkpu9TvSh8nOxCLx5z7TGIg5daTEkdbIkkee8VOzi_lLk4Zr1K_3frkN6SbseviduqXLb9H13Yqt3HEtZmUeefJarUiPgTvSkzk4j6t7_nz6kmwQ_Yvjv-z6ubzp-vLr_XVty-ry4ur2gkBpbYeuk42omHOM90w6xlrNh3nAjqmHQ1Kbji1WqrOeaUDNoXlQVOpePBa8LPq_WHvLsUfe5-LGfvs_DDYycd9Ni0IoVslJcp3_5VSMwApAeGbv-Bd3Cd8vmyYlELKVlGF6vyfiratoMgQ0QNyKeacfDC71I82zYaCWaI2h6jNUi4pmhlnXh0X77vRbx4mjtkieHsENjs7BAza9fnBtaAa3nJ0rw8u2GjsNqG5-c6AcgANwKnkvwB2ersD</recordid><startdate>20071001</startdate><enddate>20071001</enddate><creator>Balaji, Vasudevan</creator><creator>Gibly, Avi</creator><creator>Debbie, Paul</creator><creator>Sessa, Guido</creator><general>Berlin/Heidelberg : Springer-Verlag</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PADUT</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>20071001</creationdate><title>Transcriptional analysis of the tomato resistance response triggered by recognition of the Xanthomonas type III effector AvrXv3</title><author>Balaji, Vasudevan ; Gibly, Avi ; Debbie, Paul ; Sessa, Guido</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c440t-ae0bb65452ce2852ae225db3340b28c1f76d31a867bce78fb284a3f81673fe843</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>AvrXv3</topic><topic>Bacterial Proteins - genetics</topic><topic>Biological and medical sciences</topic><topic>Cellular stress response</topic><topic>Crops</topic><topic>disease resistance</topic><topic>DNA microarrays</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes</topic><topic>Genes, Bacterial</topic><topic>Genes, Plant</topic><topic>Genomics</topic><topic>Inoculation</topic><topic>Lipid metabolism</topic><topic>Lycopersicon esculentum</topic><topic>Lycopersicon esculentum - genetics</topic><topic>Lycopersicon esculentum - metabolism</topic><topic>Lycopersicon esculentum - microbiology</topic><topic>Metabolism</topic><topic>Models, Biological</topic><topic>Molecular and cellular biology</topic><topic>Molecular genetics</topic><topic>Oligonucleotide Array Sequence Analysis</topic><topic>Photosynthesis</topic><topic>Plant bacterial diseases</topic><topic>Plant Diseases - genetics</topic><topic>Plant Diseases - microbiology</topic><topic>Plant resistance</topic><topic>Protein biosynthesis</topic><topic>Protein turnover</topic><topic>Proteins</topic><topic>Tomatoes</topic><topic>Trans-Activators - genetics</topic><topic>Transcription factors</topic><topic>Transcriptomes</topic><topic>Xanthomonas</topic><topic>Xanthomonas campestris</topic><topic>Xanthomonas campestris - genetics</topic><topic>Xanthomonas campestris - pathogenicity</topic><topic>Xanthomonas campestris pv. vesicatoria</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Balaji, Vasudevan</creatorcontrib><creatorcontrib>Gibly, Avi</creatorcontrib><creatorcontrib>Debbie, Paul</creatorcontrib><creatorcontrib>Sessa, Guido</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Research Library China</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>Functional & integrative genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Balaji, Vasudevan</au><au>Gibly, Avi</au><au>Debbie, Paul</au><au>Sessa, Guido</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transcriptional analysis of the tomato resistance response triggered by recognition of the Xanthomonas type III effector AvrXv3</atitle><jtitle>Functional & integrative genomics</jtitle><addtitle>Funct Integr Genomics</addtitle><date>2007-10-01</date><risdate>2007</risdate><volume>7</volume><issue>4</issue><spage>305</spage><epage>316</epage><pages>305-316</pages><issn>1438-793X</issn><eissn>1438-7948</eissn><abstract>The type III effector AvrXv3 from Xanthomonas campestris pv. vesicatoria (Xcv) elicits a resistance response in the tomato line Hawaii 7981. To test whether similar genes participate in responses triggered by recognition of different avirulence proteins, we examined the effect of AvrXv3 expression on the plant transcriptome as compared to that of other avirulence proteins. By microarray analysis we monitored expression of approximately 8,600 tomato genes upon inoculation with isogenic Xcv strains differing only by the avrXv3 gene. Changes in transcript levels of 139 genes were observed within 8 h, and a massive shift in expression of 1,294 genes was detected at 12 h. Recognition of AvrXv3 modulated a large number of genes encoding transcription factors and signaling components. In addition, genes involved in defense and stress responses, lipid metabolism, protein degradation, and secondary metabolism were mainly up-regulated. Conversely, genes related to photosynthesis and protein synthesis were generally down-regulated. Many novel genes encoding proteins of unknown function were also identified. A comparison between AvrXv3-modulated genes and those differentially expressed in tomato plants recognizing other bacterial effectors revealed partial overlap and similar distribution in functional classes. The identification of tomato genes modulated by AvrXv3 expression paves the way for dissecting defense networks activated by recognition of this effector in resistant plants.</abstract><cop>Heidelberg</cop><pub>Berlin/Heidelberg : Springer-Verlag</pub><pmid>17582538</pmid><doi>10.1007/s10142-007-0050-y</doi><tpages>12</tpages></addata></record> |
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| subjects | AvrXv3 Bacterial Proteins - genetics Biological and medical sciences Cellular stress response Crops disease resistance DNA microarrays Fundamental and applied biological sciences. Psychology Gene expression Gene Expression Profiling Gene Expression Regulation, Plant Genes Genes, Bacterial Genes, Plant Genomics Inoculation Lipid metabolism Lycopersicon esculentum Lycopersicon esculentum - genetics Lycopersicon esculentum - metabolism Lycopersicon esculentum - microbiology Metabolism Models, Biological Molecular and cellular biology Molecular genetics Oligonucleotide Array Sequence Analysis Photosynthesis Plant bacterial diseases Plant Diseases - genetics Plant Diseases - microbiology Plant resistance Protein biosynthesis Protein turnover Proteins Tomatoes Trans-Activators - genetics Transcription factors Transcriptomes Xanthomonas Xanthomonas campestris Xanthomonas campestris - genetics Xanthomonas campestris - pathogenicity Xanthomonas campestris pv. vesicatoria |
| title | Transcriptional analysis of the tomato resistance response triggered by recognition of the Xanthomonas type III effector AvrXv3 |
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