Phylogenetic relationships and the temporal context for the diversification of African characins of the family Alestidae (Ostariophysi: Characiformes): Evidence from DNA sequence data
[Display omitted] ► The family Alestidae, as currently recognized, is not monophyletic. ► Its taxonomy needs to be revised due to multiple instances of poly- and paraphyly. ► The origin of the family Alestidae sensu stricto dates back to the Early Tertiary. ► Cladistic vicariance theories might not...
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Veröffentlicht in: | Molecular phylogenetics and evolution 2011-09, Vol.60 (3), p.385-397 |
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► The family Alestidae, as currently recognized, is not monophyletic. ► Its taxonomy needs to be revised due to multiple instances of poly- and paraphyly. ► The origin of the family Alestidae sensu stricto dates back to the Early Tertiary. ► Cladistic vicariance theories might not adequately explain characiform biogeography.
Phylogenetic relationships within the family Alestidae were investigated using parsimony, maximum likelihood, and Bayesian approaches based on a molecular dataset that included both nuclear and mitochondrial markers. Multiple representatives of all but two of the recognized alestid genera were included, which allowed for testing previous hypotheses of intergeneric relationships and the monophyly of several genera. The phylogenetic position of the Neotropical genus Chalceus with respect to the family Alestidae was also examined. In order to understand the temporal context of alestid diversification, Bayesian methods of divergence time estimation using fossil data in the form of calibration priors were used to date the nodes of the phylogenetic tree. Our results rejected the monophyly of the family as currently recognized (Alestidae sensu lato) and revealed several instances of poly- and paraphyly among genera. The genus Chalceus was recovered well nested within Neotropical characiforms, thus rejecting the hypothesis that this taxon is the most basal alestid. The estimated mean divergence time for the alestid clade (Alestidae sensu stricto) was 54 Mya with a 95% credibility interval of 63–49 Mya. These results are incongruent with the hypothesis that the origin of the family Alestidae predates the African-South American Drift-Vicariance event. |
doi_str_mv | 10.1016/j.ympev.2011.04.016 |
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► The family Alestidae, as currently recognized, is not monophyletic. ► Its taxonomy needs to be revised due to multiple instances of poly- and paraphyly. ► The origin of the family Alestidae sensu stricto dates back to the Early Tertiary. ► Cladistic vicariance theories might not adequately explain characiform biogeography.
Phylogenetic relationships within the family Alestidae were investigated using parsimony, maximum likelihood, and Bayesian approaches based on a molecular dataset that included both nuclear and mitochondrial markers. Multiple representatives of all but two of the recognized alestid genera were included, which allowed for testing previous hypotheses of intergeneric relationships and the monophyly of several genera. The phylogenetic position of the Neotropical genus Chalceus with respect to the family Alestidae was also examined. In order to understand the temporal context of alestid diversification, Bayesian methods of divergence time estimation using fossil data in the form of calibration priors were used to date the nodes of the phylogenetic tree. Our results rejected the monophyly of the family as currently recognized (Alestidae sensu lato) and revealed several instances of poly- and paraphyly among genera. The genus Chalceus was recovered well nested within Neotropical characiforms, thus rejecting the hypothesis that this taxon is the most basal alestid. The estimated mean divergence time for the alestid clade (Alestidae sensu stricto) was 54 Mya with a 95% credibility interval of 63–49 Mya. These results are incongruent with the hypothesis that the origin of the family Alestidae predates the African-South American Drift-Vicariance event.</description><identifier>ISSN: 1055-7903</identifier><identifier>EISSN: 1095-9513</identifier><identifier>DOI: 10.1016/j.ympev.2011.04.016</identifier><identifier>PMID: 21550408</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Alestidae ; Animals ; Bayes Theorem ; Biogeography ; Biological Evolution ; Chalceus ; Characidae ; Characiformes ; Characiformes - classification ; Characiformes - genetics ; data collection ; Divergence time estimation ; DNA ; fossils ; Freshwater ; Likelihood Functions ; Models, Genetic ; monophyly ; nucleotide sequences ; Ostariophysi ; paraphyly ; Phylogeny ; Phylogeography ; Sequence Analysis, DNA ; Systematics ; tropics</subject><ispartof>Molecular phylogenetics and evolution, 2011-09, Vol.60 (3), p.385-397</ispartof><rights>2011 Elsevier Inc.</rights><rights>Copyright © 2011 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c414t-40c90c5ef29da37e2bcce66f0c44ea67b895ab87f265f11c881c0a7182df26e53</citedby><cites>FETCH-LOGICAL-c414t-40c90c5ef29da37e2bcce66f0c44ea67b895ab87f265f11c881c0a7182df26e53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1055790311002089$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21550408$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Arroyave, Jairo</creatorcontrib><creatorcontrib>Stiassny, Melanie L.J.</creatorcontrib><title>Phylogenetic relationships and the temporal context for the diversification of African characins of the family Alestidae (Ostariophysi: Characiformes): Evidence from DNA sequence data</title><title>Molecular phylogenetics and evolution</title><addtitle>Mol Phylogenet Evol</addtitle><description>[Display omitted]
► The family Alestidae, as currently recognized, is not monophyletic. ► Its taxonomy needs to be revised due to multiple instances of poly- and paraphyly. ► The origin of the family Alestidae sensu stricto dates back to the Early Tertiary. ► Cladistic vicariance theories might not adequately explain characiform biogeography.
Phylogenetic relationships within the family Alestidae were investigated using parsimony, maximum likelihood, and Bayesian approaches based on a molecular dataset that included both nuclear and mitochondrial markers. Multiple representatives of all but two of the recognized alestid genera were included, which allowed for testing previous hypotheses of intergeneric relationships and the monophyly of several genera. The phylogenetic position of the Neotropical genus Chalceus with respect to the family Alestidae was also examined. In order to understand the temporal context of alestid diversification, Bayesian methods of divergence time estimation using fossil data in the form of calibration priors were used to date the nodes of the phylogenetic tree. Our results rejected the monophyly of the family as currently recognized (Alestidae sensu lato) and revealed several instances of poly- and paraphyly among genera. The genus Chalceus was recovered well nested within Neotropical characiforms, thus rejecting the hypothesis that this taxon is the most basal alestid. The estimated mean divergence time for the alestid clade (Alestidae sensu stricto) was 54 Mya with a 95% credibility interval of 63–49 Mya. These results are incongruent with the hypothesis that the origin of the family Alestidae predates the African-South American Drift-Vicariance event.</description><subject>Alestidae</subject><subject>Animals</subject><subject>Bayes Theorem</subject><subject>Biogeography</subject><subject>Biological Evolution</subject><subject>Chalceus</subject><subject>Characidae</subject><subject>Characiformes</subject><subject>Characiformes - classification</subject><subject>Characiformes - genetics</subject><subject>data collection</subject><subject>Divergence time estimation</subject><subject>DNA</subject><subject>fossils</subject><subject>Freshwater</subject><subject>Likelihood Functions</subject><subject>Models, Genetic</subject><subject>monophyly</subject><subject>nucleotide sequences</subject><subject>Ostariophysi</subject><subject>paraphyly</subject><subject>Phylogeny</subject><subject>Phylogeography</subject><subject>Sequence Analysis, DNA</subject><subject>Systematics</subject><subject>tropics</subject><issn>1055-7903</issn><issn>1095-9513</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkV2P1CAYhYnRuOvqLzBR7tSLVmihH5t4MRnXj2TjmuheEwZetkzaUoGZ2F_m35NOVy_1Cjg850Deg9BzSnJKaPV2n8_DBMe8IJTmhOVJe4DOKWl51nJaPlz2nGd1S8oz9CSEPUkgb_ljdFZQzgkjzTn69bWbe3cHI0SrsIdeRuvG0NkpYDlqHDvAEYbJedlj5cYIPyM2zp8utD2CD9ZYdXJhZ_DG-HQaseqkl8qOYREX1sjB9jPe9BCi1RLw65sQpbdu6uZgL_F2NaToAcKbS3x1tBpGlYzeDfj9lw0O8ONwUrSM8il6ZGQf4Nn9eoFuP1x9337Krm8-ft5urjPFKIsZI6olioMpWi3LGoqdUlBVhijGQFb1rmm53DW1KSpuKFVNQxWRNW0KnSTg5QV6teZO3qXnQxSDDQr6Xo7gDkG0hLE6DfP_ZFMz1tCas0SWK6m8C8GDEZO3g_SzoEQs1Yq9OFUrlmoFYSJpyfXiPv-wG0D_9fzpMgEvV8BIJ-Sdt0HcfksJnBDCClYvEe9WAtLEjha8CMouI9XWg4pCO_vPL_wG3EfDMw</recordid><startdate>20110901</startdate><enddate>20110901</enddate><creator>Arroyave, Jairo</creator><creator>Stiassny, Melanie L.J.</creator><general>Elsevier Inc</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7TM</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20110901</creationdate><title>Phylogenetic relationships and the temporal context for the diversification of African characins of the family Alestidae (Ostariophysi: Characiformes): Evidence from DNA sequence data</title><author>Arroyave, Jairo ; Stiassny, Melanie L.J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c414t-40c90c5ef29da37e2bcce66f0c44ea67b895ab87f265f11c881c0a7182df26e53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Alestidae</topic><topic>Animals</topic><topic>Bayes Theorem</topic><topic>Biogeography</topic><topic>Biological Evolution</topic><topic>Chalceus</topic><topic>Characidae</topic><topic>Characiformes</topic><topic>Characiformes - classification</topic><topic>Characiformes - genetics</topic><topic>data collection</topic><topic>Divergence time estimation</topic><topic>DNA</topic><topic>fossils</topic><topic>Freshwater</topic><topic>Likelihood Functions</topic><topic>Models, Genetic</topic><topic>monophyly</topic><topic>nucleotide sequences</topic><topic>Ostariophysi</topic><topic>paraphyly</topic><topic>Phylogeny</topic><topic>Phylogeography</topic><topic>Sequence Analysis, DNA</topic><topic>Systematics</topic><topic>tropics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Arroyave, Jairo</creatorcontrib><creatorcontrib>Stiassny, Melanie L.J.</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Molecular phylogenetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Arroyave, Jairo</au><au>Stiassny, Melanie L.J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic relationships and the temporal context for the diversification of African characins of the family Alestidae (Ostariophysi: Characiformes): Evidence from DNA sequence data</atitle><jtitle>Molecular phylogenetics and evolution</jtitle><addtitle>Mol Phylogenet Evol</addtitle><date>2011-09-01</date><risdate>2011</risdate><volume>60</volume><issue>3</issue><spage>385</spage><epage>397</epage><pages>385-397</pages><issn>1055-7903</issn><eissn>1095-9513</eissn><abstract>[Display omitted]
► The family Alestidae, as currently recognized, is not monophyletic. ► Its taxonomy needs to be revised due to multiple instances of poly- and paraphyly. ► The origin of the family Alestidae sensu stricto dates back to the Early Tertiary. ► Cladistic vicariance theories might not adequately explain characiform biogeography.
Phylogenetic relationships within the family Alestidae were investigated using parsimony, maximum likelihood, and Bayesian approaches based on a molecular dataset that included both nuclear and mitochondrial markers. Multiple representatives of all but two of the recognized alestid genera were included, which allowed for testing previous hypotheses of intergeneric relationships and the monophyly of several genera. The phylogenetic position of the Neotropical genus Chalceus with respect to the family Alestidae was also examined. In order to understand the temporal context of alestid diversification, Bayesian methods of divergence time estimation using fossil data in the form of calibration priors were used to date the nodes of the phylogenetic tree. Our results rejected the monophyly of the family as currently recognized (Alestidae sensu lato) and revealed several instances of poly- and paraphyly among genera. The genus Chalceus was recovered well nested within Neotropical characiforms, thus rejecting the hypothesis that this taxon is the most basal alestid. The estimated mean divergence time for the alestid clade (Alestidae sensu stricto) was 54 Mya with a 95% credibility interval of 63–49 Mya. These results are incongruent with the hypothesis that the origin of the family Alestidae predates the African-South American Drift-Vicariance event.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>21550408</pmid><doi>10.1016/j.ympev.2011.04.016</doi><tpages>13</tpages></addata></record> |
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subjects | Alestidae Animals Bayes Theorem Biogeography Biological Evolution Chalceus Characidae Characiformes Characiformes - classification Characiformes - genetics data collection Divergence time estimation DNA fossils Freshwater Likelihood Functions Models, Genetic monophyly nucleotide sequences Ostariophysi paraphyly Phylogeny Phylogeography Sequence Analysis, DNA Systematics tropics |
title | Phylogenetic relationships and the temporal context for the diversification of African characins of the family Alestidae (Ostariophysi: Characiformes): Evidence from DNA sequence data |
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