Phylogenetic analysis of intestinal bacteria of freshwater salmon Salmo salar and sea trout Salmo trutta trutta and diet
The microbial diversity of culturable intestinal microflora of wild freshwater salmonid fishes salmon Salmo salar and sea trout Salmo trutta trutta juveniles (0+ years old) from the same environmental conditions were investigated by means of molecular identification techniques and analysis of diet....
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| Veröffentlicht in: | Fisheries science 2008-12, Vol.74 (6), p.1307-1314 |
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| creator | Skrodenyte-Arbaciauskiene, V.(Vilnius Univ. (Lithuania)) Sruoga, A Butkauskas, D Skrupskelis, K |
| description | The microbial diversity of culturable intestinal microflora of wild freshwater salmonid fishes salmon
Salmo salar
and sea trout
Salmo trutta trutta
juveniles (0+ years old) from the same environmental conditions were investigated by means of molecular identification techniques and analysis of diet. Significant differences in the intestinal microbial diversity were observed in different fish species. The predominant group in the intestinal tract of the salmon comprised representatives of the Enterobacteriaceae family (23%),
Plesiomonas
(19.2%) and
Carnobacterium
(15.3%). Predominant microbiota in sea trout intestinal tract were Enterobacteriaceae (52%),
Aeromonas
(22%) and
Pseudomonas
(14%). The results show that Enterobacteriaceae were predominant in the intestinal tract of the salmon and the sea trout juveniles raised on diets of different compositions. However, molecular identification of the intestinal microbiota at the species or genus level revealed differences in these fish species. Bacteria in the hindgut of salmon included
Pragia
and
Serratia
. However, bacteria in the gut contents of sea trout from the Enterobacteriaceae family were
Buttiauxella, Enterobacter, Moellerella, Pantoea, Rahnella
and
Tiedjeia arctica
. A novel phylotype of
T. arctica
is harbored in the intestinal tract of wild salmon, and may correspond to a previously undescribed species. |
| doi_str_mv | 10.1111/j.1444-2906.2008.01656.x |
| format | Article |
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Salmo salar
and sea trout
Salmo trutta trutta
juveniles (0+ years old) from the same environmental conditions were investigated by means of molecular identification techniques and analysis of diet. Significant differences in the intestinal microbial diversity were observed in different fish species. The predominant group in the intestinal tract of the salmon comprised representatives of the Enterobacteriaceae family (23%),
Plesiomonas
(19.2%) and
Carnobacterium
(15.3%). Predominant microbiota in sea trout intestinal tract were Enterobacteriaceae (52%),
Aeromonas
(22%) and
Pseudomonas
(14%). The results show that Enterobacteriaceae were predominant in the intestinal tract of the salmon and the sea trout juveniles raised on diets of different compositions. However, molecular identification of the intestinal microbiota at the species or genus level revealed differences in these fish species. Bacteria in the hindgut of salmon included
Pragia
and
Serratia
. However, bacteria in the gut contents of sea trout from the Enterobacteriaceae family were
Buttiauxella, Enterobacter, Moellerella, Pantoea, Rahnella
and
Tiedjeia arctica
. A novel phylotype of
T. arctica
is harbored in the intestinal tract of wild salmon, and may correspond to a previously undescribed species.</description><identifier>ISSN: 0919-9268</identifier><identifier>EISSN: 1444-2906</identifier><identifier>DOI: 10.1111/j.1444-2906.2008.01656.x</identifier><language>eng</language><publisher>Tokyo: Springer-Verlag</publisher><subject>16S rRNA gene sequencing ; Aeromonas ; ALIMENT POUR ANIMAUX ; Animal migration ; Arctica ; Bacteria ; Biomedical and Life Sciences ; Buttiauxella ; Carnobacterium ; COMPOSICION APROXIMADA ; COMPOSITION GLOBALE ; Diet ; Enterobacter ; Enterobacteriaceae ; Environmental conditions ; FEEDS ; FILOGENIA ; Fish ; Fish & Wildlife Biology & Management ; FLORA MICROBIANA ; FLORE MICROBIENNE ; Food Science ; Freshwater & Marine Ecology ; Freshwater fish ; INTESTIN ; intestinal microbiota ; INTESTINES ; INTESTINOS ; Life Sciences ; MICROBIAL FLORA ; Microbiota ; NUCLEOTIDE SEQUENCE ; PHYLOGENIE ; PHYLOGENY ; PIENSOS ; Plesiomonas ; PROXIMATE COMPOSITION ; Pseudomonas ; Rahnella ; SALMO SALAR ; SALMO TRUTTA ; Salmo trutta trutta ; Salmon ; sea trout ; SECUENCIA NUCLEOTIDICA ; SEQUENCE NUCLEOTIDIQUE ; Serratia ; Species diversity ; Trout</subject><ispartof>Fisheries science, 2008-12, Vol.74 (6), p.1307-1314</ispartof><rights>The Japanese Society of Fisheries Science 2008</rights><rights>2008 Japanese Society of Fisheries Science</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5046-ba7df304eed15739a20a12edfd488a1d876b271ece78e8b6dbc16228d1c8fb823</citedby><cites>FETCH-LOGICAL-c5046-ba7df304eed15739a20a12edfd488a1d876b271ece78e8b6dbc16228d1c8fb823</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1111/j.1444-2906.2008.01656.x$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1111/j.1444-2906.2008.01656.x$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>Skrodenyte-Arbaciauskiene, V.(Vilnius Univ. (Lithuania))</creatorcontrib><creatorcontrib>Sruoga, A</creatorcontrib><creatorcontrib>Butkauskas, D</creatorcontrib><creatorcontrib>Skrupskelis, K</creatorcontrib><title>Phylogenetic analysis of intestinal bacteria of freshwater salmon Salmo salar and sea trout Salmo trutta trutta and diet</title><title>Fisheries science</title><addtitle>Fish Sci</addtitle><description>The microbial diversity of culturable intestinal microflora of wild freshwater salmonid fishes salmon
Salmo salar
and sea trout
Salmo trutta trutta
juveniles (0+ years old) from the same environmental conditions were investigated by means of molecular identification techniques and analysis of diet. Significant differences in the intestinal microbial diversity were observed in different fish species. The predominant group in the intestinal tract of the salmon comprised representatives of the Enterobacteriaceae family (23%),
Plesiomonas
(19.2%) and
Carnobacterium
(15.3%). Predominant microbiota in sea trout intestinal tract were Enterobacteriaceae (52%),
Aeromonas
(22%) and
Pseudomonas
(14%). The results show that Enterobacteriaceae were predominant in the intestinal tract of the salmon and the sea trout juveniles raised on diets of different compositions. However, molecular identification of the intestinal microbiota at the species or genus level revealed differences in these fish species. Bacteria in the hindgut of salmon included
Pragia
and
Serratia
. However, bacteria in the gut contents of sea trout from the Enterobacteriaceae family were
Buttiauxella, Enterobacter, Moellerella, Pantoea, Rahnella
and
Tiedjeia arctica
. A novel phylotype of
T. arctica
is harbored in the intestinal tract of wild salmon, and may correspond to a previously undescribed species.</description><subject>16S rRNA gene sequencing</subject><subject>Aeromonas</subject><subject>ALIMENT POUR ANIMAUX</subject><subject>Animal migration</subject><subject>Arctica</subject><subject>Bacteria</subject><subject>Biomedical and Life Sciences</subject><subject>Buttiauxella</subject><subject>Carnobacterium</subject><subject>COMPOSICION APROXIMADA</subject><subject>COMPOSITION GLOBALE</subject><subject>Diet</subject><subject>Enterobacter</subject><subject>Enterobacteriaceae</subject><subject>Environmental conditions</subject><subject>FEEDS</subject><subject>FILOGENIA</subject><subject>Fish</subject><subject>Fish & Wildlife Biology & Management</subject><subject>FLORA MICROBIANA</subject><subject>FLORE MICROBIENNE</subject><subject>Food Science</subject><subject>Freshwater & Marine Ecology</subject><subject>Freshwater fish</subject><subject>INTESTIN</subject><subject>intestinal microbiota</subject><subject>INTESTINES</subject><subject>INTESTINOS</subject><subject>Life Sciences</subject><subject>MICROBIAL FLORA</subject><subject>Microbiota</subject><subject>NUCLEOTIDE SEQUENCE</subject><subject>PHYLOGENIE</subject><subject>PHYLOGENY</subject><subject>PIENSOS</subject><subject>Plesiomonas</subject><subject>PROXIMATE COMPOSITION</subject><subject>Pseudomonas</subject><subject>Rahnella</subject><subject>SALMO SALAR</subject><subject>SALMO TRUTTA</subject><subject>Salmo trutta trutta</subject><subject>Salmon</subject><subject>sea trout</subject><subject>SECUENCIA NUCLEOTIDICA</subject><subject>SEQUENCE NUCLEOTIDIQUE</subject><subject>Serratia</subject><subject>Species diversity</subject><subject>Trout</subject><issn>0919-9268</issn><issn>1444-2906</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqNkk1v1DAQhi0EEkvhJyBFHOCUYE8Sxz5wQFULRZWoVDhbTjzZepWNi-2ou_8emxSQeqjqy3jGzzv-eE1IwWjF0vi4q1jTNCVIyiugVFSU8ZZXh2dk82_hOdlQyWQpgYuX5FUIO0opb6nYkMPVzXFyW5wx2qHQs56OwYbCjYWdI4ZoU6Xo9RDRW53Lo8dwc6dTXgQ97d1cXOeQE-1TA1ME1EX0bon3K9EvMeq_IRPGYnxNXox6CvjmPp6Qn-dnP06_lpffv1ycfr4sh5Y2vOx1Z8aaNoiGtV0tNVDNAM1oGiE0M6LjPXQMB-wEip6bfmAcQBg2iLEXUJ-QD2vfW-9-LelGam_DgNOkZ3RLUJJCzUEKmsj3j5JAQXDoMvjuAbhzi08PlRjoQLYAPEFihQbvQvA4qltv99ofFaMqO6d2KhukskEqO6f-OKcOSfppld7ZCY9P1qnzi-s8S3q56kOSzlv0_8_3hL3frtpRO6W33gb17SoRMv2YToj6N8lcux8</recordid><startdate>200812</startdate><enddate>200812</enddate><creator>Skrodenyte-Arbaciauskiene, V.(Vilnius Univ. 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(Lithuania)) ; Sruoga, A ; Butkauskas, D ; Skrupskelis, K</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5046-ba7df304eed15739a20a12edfd488a1d876b271ece78e8b6dbc16228d1c8fb823</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>16S rRNA gene sequencing</topic><topic>Aeromonas</topic><topic>ALIMENT POUR ANIMAUX</topic><topic>Animal migration</topic><topic>Arctica</topic><topic>Bacteria</topic><topic>Biomedical and Life Sciences</topic><topic>Buttiauxella</topic><topic>Carnobacterium</topic><topic>COMPOSICION APROXIMADA</topic><topic>COMPOSITION GLOBALE</topic><topic>Diet</topic><topic>Enterobacter</topic><topic>Enterobacteriaceae</topic><topic>Environmental conditions</topic><topic>FEEDS</topic><topic>FILOGENIA</topic><topic>Fish</topic><topic>Fish & Wildlife Biology & Management</topic><topic>FLORA MICROBIANA</topic><topic>FLORE MICROBIENNE</topic><topic>Food Science</topic><topic>Freshwater & Marine Ecology</topic><topic>Freshwater fish</topic><topic>INTESTIN</topic><topic>intestinal microbiota</topic><topic>INTESTINES</topic><topic>INTESTINOS</topic><topic>Life Sciences</topic><topic>MICROBIAL FLORA</topic><topic>Microbiota</topic><topic>NUCLEOTIDE SEQUENCE</topic><topic>PHYLOGENIE</topic><topic>PHYLOGENY</topic><topic>PIENSOS</topic><topic>Plesiomonas</topic><topic>PROXIMATE COMPOSITION</topic><topic>Pseudomonas</topic><topic>Rahnella</topic><topic>SALMO SALAR</topic><topic>SALMO TRUTTA</topic><topic>Salmo trutta trutta</topic><topic>Salmon</topic><topic>sea trout</topic><topic>SECUENCIA NUCLEOTIDICA</topic><topic>SEQUENCE NUCLEOTIDIQUE</topic><topic>Serratia</topic><topic>Species diversity</topic><topic>Trout</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Skrodenyte-Arbaciauskiene, V.(Vilnius Univ. 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(Lithuania))</au><au>Sruoga, A</au><au>Butkauskas, D</au><au>Skrupskelis, K</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic analysis of intestinal bacteria of freshwater salmon Salmo salar and sea trout Salmo trutta trutta and diet</atitle><jtitle>Fisheries science</jtitle><stitle>Fish Sci</stitle><date>2008-12</date><risdate>2008</risdate><volume>74</volume><issue>6</issue><spage>1307</spage><epage>1314</epage><pages>1307-1314</pages><issn>0919-9268</issn><eissn>1444-2906</eissn><abstract>The microbial diversity of culturable intestinal microflora of wild freshwater salmonid fishes salmon
Salmo salar
and sea trout
Salmo trutta trutta
juveniles (0+ years old) from the same environmental conditions were investigated by means of molecular identification techniques and analysis of diet. Significant differences in the intestinal microbial diversity were observed in different fish species. The predominant group in the intestinal tract of the salmon comprised representatives of the Enterobacteriaceae family (23%),
Plesiomonas
(19.2%) and
Carnobacterium
(15.3%). Predominant microbiota in sea trout intestinal tract were Enterobacteriaceae (52%),
Aeromonas
(22%) and
Pseudomonas
(14%). The results show that Enterobacteriaceae were predominant in the intestinal tract of the salmon and the sea trout juveniles raised on diets of different compositions. However, molecular identification of the intestinal microbiota at the species or genus level revealed differences in these fish species. Bacteria in the hindgut of salmon included
Pragia
and
Serratia
. However, bacteria in the gut contents of sea trout from the Enterobacteriaceae family were
Buttiauxella, Enterobacter, Moellerella, Pantoea, Rahnella
and
Tiedjeia arctica
. A novel phylotype of
T. arctica
is harbored in the intestinal tract of wild salmon, and may correspond to a previously undescribed species.</abstract><cop>Tokyo</cop><pub>Springer-Verlag</pub><doi>10.1111/j.1444-2906.2008.01656.x</doi><tpages>8</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0919-9268 |
| ispartof | Fisheries science, 2008-12, Vol.74 (6), p.1307-1314 |
| issn | 0919-9268 1444-2906 |
| language | eng |
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| source | SpringerLink Journals - AutoHoldings |
| subjects | 16S rRNA gene sequencing Aeromonas ALIMENT POUR ANIMAUX Animal migration Arctica Bacteria Biomedical and Life Sciences Buttiauxella Carnobacterium COMPOSICION APROXIMADA COMPOSITION GLOBALE Diet Enterobacter Enterobacteriaceae Environmental conditions FEEDS FILOGENIA Fish Fish & Wildlife Biology & Management FLORA MICROBIANA FLORE MICROBIENNE Food Science Freshwater & Marine Ecology Freshwater fish INTESTIN intestinal microbiota INTESTINES INTESTINOS Life Sciences MICROBIAL FLORA Microbiota NUCLEOTIDE SEQUENCE PHYLOGENIE PHYLOGENY PIENSOS Plesiomonas PROXIMATE COMPOSITION Pseudomonas Rahnella SALMO SALAR SALMO TRUTTA Salmo trutta trutta Salmon sea trout SECUENCIA NUCLEOTIDICA SEQUENCE NUCLEOTIDIQUE Serratia Species diversity Trout |
| title | Phylogenetic analysis of intestinal bacteria of freshwater salmon Salmo salar and sea trout Salmo trutta trutta and diet |
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