Streptomyces indicus sp. nov., an actinomycete isolated from deep-sea sediment
The taxonomic position of an actinomycete isolated from deep-sea sediment from the Indian Ocean was determined by using a polyphasic approach. The presence of iso-C15 : 0, anteiso-C15 : 0, iso-C16 : 0, iso-C17 : 0 and anteiso-C17 : 0 as the major cellular fatty acids, LL-diaminopimelic acid as the c...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2011-11, Vol.61 (Pt 11), p.2712-2716 |
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| creator | Luo, Yingxue Xiao, Jing Wang, Yin Xu, Jing Xie, Shujie Xu, Jun |
| description | The taxonomic position of an actinomycete isolated from deep-sea sediment from the Indian Ocean was determined by using a polyphasic approach. The presence of iso-C15 : 0, anteiso-C15 : 0, iso-C16 : 0, iso-C17 : 0 and anteiso-C17 : 0 as the major cellular fatty acids, LL-diaminopimelic acid as the characteristic diamino acid, and MK-9(H4, H6 and H8) as the major menaquinones supported the affiliation of strain IH32-1T to the genus STREPTOMYCES: Comparison of 16S rRNA gene sequences showed that strain IH32-1T exhibited highest similarities to the type strains of Streptomyces globosus (97.6 %) and Streptomyces toxytricini (97.6 %). However, DNA–DNA relatedness values between strain IH32-1T and the type strains of S. globosus and S. toxytricini were determined as 55.2±4.7 and 38.3±2.5 %, respectively. Based on its chemotaxonomic, phenotypic and genotypic characteristics, strain IH32-1T is considered to represent a novel species in the genus Streptomyces, for which the name Streptomyces indicus sp. nov. is proposed. The type strain is IH32-1T ( = DSM 42001T = CGMCC 4.5727T). |
| doi_str_mv | 10.1099/ijs.0.029389-0 |
| format | Article |
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The presence of iso-C15 : 0, anteiso-C15 : 0, iso-C16 : 0, iso-C17 : 0 and anteiso-C17 : 0 as the major cellular fatty acids, LL-diaminopimelic acid as the characteristic diamino acid, and MK-9(H4, H6 and H8) as the major menaquinones supported the affiliation of strain IH32-1T to the genus STREPTOMYCES: Comparison of 16S rRNA gene sequences showed that strain IH32-1T exhibited highest similarities to the type strains of Streptomyces globosus (97.6 %) and Streptomyces toxytricini (97.6 %). However, DNA–DNA relatedness values between strain IH32-1T and the type strains of S. globosus and S. toxytricini were determined as 55.2±4.7 and 38.3±2.5 %, respectively. Based on its chemotaxonomic, phenotypic and genotypic characteristics, strain IH32-1T is considered to represent a novel species in the genus Streptomyces, for which the name Streptomyces indicus sp. nov. is proposed. The type strain is IH32-1T ( = DSM 42001T = CGMCC 4.5727T).</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.029389-0</identifier><identifier>PMID: 21169463</identifier><language>eng</language><publisher>Reading: International Union of Microbiological Societies</publisher><subject>Animal, plant and microbial ecology ; Bacteriology ; Biological and medical sciences ; chemotaxonomy ; DNA, Bacterial - genetics ; fatty acids ; Fatty Acids - metabolism ; Fundamental and applied biological sciences. Psychology ; genotype ; Geologic Sediments - microbiology ; Indian Ocean ; menaquinones ; Microbial ecology ; Microbiology ; Molecular Sequence Data ; new species ; nucleotide sequences ; phenotype ; Phylogeny ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; Seawater - microbiology ; sediments ; Streptomyces - classification ; Streptomyces - genetics ; Streptomyces - isolation & purification ; Streptomyces - metabolism ; Streptomyces globosus ; Streptomyces toxytricini ; Systematics ; Various environments (extraatmospheric space, air, water)</subject><ispartof>International journal of systematic and evolutionary microbiology, 2011-11, Vol.61 (Pt 11), p.2712-2716</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c348t-cb795de423a6d602979e1860955a1a42224013ec45eccdb87e53a72571a0db773</citedby><cites>FETCH-LOGICAL-c348t-cb795de423a6d602979e1860955a1a42224013ec45eccdb87e53a72571a0db773</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3744,27923,27924</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24741386$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21169463$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Luo, Yingxue</creatorcontrib><creatorcontrib>Xiao, Jing</creatorcontrib><creatorcontrib>Wang, Yin</creatorcontrib><creatorcontrib>Xu, Jing</creatorcontrib><creatorcontrib>Xie, Shujie</creatorcontrib><creatorcontrib>Xu, Jun</creatorcontrib><title>Streptomyces indicus sp. nov., an actinomycete isolated from deep-sea sediment</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>The taxonomic position of an actinomycete isolated from deep-sea sediment from the Indian Ocean was determined by using a polyphasic approach. The presence of iso-C15 : 0, anteiso-C15 : 0, iso-C16 : 0, iso-C17 : 0 and anteiso-C17 : 0 as the major cellular fatty acids, LL-diaminopimelic acid as the characteristic diamino acid, and MK-9(H4, H6 and H8) as the major menaquinones supported the affiliation of strain IH32-1T to the genus STREPTOMYCES: Comparison of 16S rRNA gene sequences showed that strain IH32-1T exhibited highest similarities to the type strains of Streptomyces globosus (97.6 %) and Streptomyces toxytricini (97.6 %). However, DNA–DNA relatedness values between strain IH32-1T and the type strains of S. globosus and S. toxytricini were determined as 55.2±4.7 and 38.3±2.5 %, respectively. Based on its chemotaxonomic, phenotypic and genotypic characteristics, strain IH32-1T is considered to represent a novel species in the genus Streptomyces, for which the name Streptomyces indicus sp. nov. is proposed. The type strain is IH32-1T ( = DSM 42001T = CGMCC 4.5727T).</description><subject>Animal, plant and microbial ecology</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>chemotaxonomy</subject><subject>DNA, Bacterial - genetics</subject><subject>fatty acids</subject><subject>Fatty Acids - metabolism</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>genotype</subject><subject>Geologic Sediments - microbiology</subject><subject>Indian Ocean</subject><subject>menaquinones</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>new species</subject><subject>nucleotide sequences</subject><subject>phenotype</subject><subject>Phylogeny</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater - microbiology</subject><subject>sediments</subject><subject>Streptomyces - classification</subject><subject>Streptomyces - genetics</subject><subject>Streptomyces - isolation & purification</subject><subject>Streptomyces - metabolism</subject><subject>Streptomyces globosus</subject><subject>Streptomyces toxytricini</subject><subject>Systematics</subject><subject>Various environments (extraatmospheric space, air, water)</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpN0MtvFDEMB-AIUdEHXDlCLqgXZnAek0yOVUVLpao9lJ6jbOKpUs2LeBap_32n7BY42bI-W9aPsY8CagHOfcuPVEMN0qnWVfCGHQltTNWA0m__6w_ZMdEjwDoAeMcOpRDGaaOO2M3dUnBepuEpIvE8phy3xGmu-Tj9rr_yMPIQlzz-AQvyTFMfFky8K9PAE-JcEQZOmPKA4_KeHXShJ_ywryfs_uL7z_Mf1fXt5dX52XUVlW6XKm6saxJqqYJJZv3eOhStAdc0QQQtpdQgFEbdYIxp01psVLCysSJA2lirTtjp7u5cpl9bpMUPmSL2fRhx2pJ3IJV0zrzIeidjmYgKdn4ueQjlyQvwLxH6NUIPfhehh3Xh0_70djNg-stfM1vBlz0IFEPflTDGTP-ctlqo1qzu8851YfLhoazm_k6CaADAGOucegZ6kIII</recordid><startdate>20111101</startdate><enddate>20111101</enddate><creator>Luo, Yingxue</creator><creator>Xiao, Jing</creator><creator>Wang, Yin</creator><creator>Xu, Jing</creator><creator>Xie, Shujie</creator><creator>Xu, Jun</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20111101</creationdate><title>Streptomyces indicus sp. nov., an actinomycete isolated from deep-sea sediment</title><author>Luo, Yingxue ; Xiao, Jing ; Wang, Yin ; Xu, Jing ; Xie, Shujie ; Xu, Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c348t-cb795de423a6d602979e1860955a1a42224013ec45eccdb87e53a72571a0db773</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Animal, plant and microbial ecology</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>chemotaxonomy</topic><topic>DNA, Bacterial - genetics</topic><topic>fatty acids</topic><topic>Fatty Acids - metabolism</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>genotype</topic><topic>Geologic Sediments - microbiology</topic><topic>Indian Ocean</topic><topic>menaquinones</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>new species</topic><topic>nucleotide sequences</topic><topic>phenotype</topic><topic>Phylogeny</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seawater - microbiology</topic><topic>sediments</topic><topic>Streptomyces - classification</topic><topic>Streptomyces - genetics</topic><topic>Streptomyces - isolation & purification</topic><topic>Streptomyces - metabolism</topic><topic>Streptomyces globosus</topic><topic>Streptomyces toxytricini</topic><topic>Systematics</topic><topic>Various environments (extraatmospheric space, air, water)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Luo, Yingxue</creatorcontrib><creatorcontrib>Xiao, Jing</creatorcontrib><creatorcontrib>Wang, Yin</creatorcontrib><creatorcontrib>Xu, Jing</creatorcontrib><creatorcontrib>Xie, Shujie</creatorcontrib><creatorcontrib>Xu, Jun</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Luo, Yingxue</au><au>Xiao, Jing</au><au>Wang, Yin</au><au>Xu, Jing</au><au>Xie, Shujie</au><au>Xu, Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Streptomyces indicus sp. nov., an actinomycete isolated from deep-sea sediment</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2011-11-01</date><risdate>2011</risdate><volume>61</volume><issue>Pt 11</issue><spage>2712</spage><epage>2716</epage><pages>2712-2716</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>The taxonomic position of an actinomycete isolated from deep-sea sediment from the Indian Ocean was determined by using a polyphasic approach. The presence of iso-C15 : 0, anteiso-C15 : 0, iso-C16 : 0, iso-C17 : 0 and anteiso-C17 : 0 as the major cellular fatty acids, LL-diaminopimelic acid as the characteristic diamino acid, and MK-9(H4, H6 and H8) as the major menaquinones supported the affiliation of strain IH32-1T to the genus STREPTOMYCES: Comparison of 16S rRNA gene sequences showed that strain IH32-1T exhibited highest similarities to the type strains of Streptomyces globosus (97.6 %) and Streptomyces toxytricini (97.6 %). However, DNA–DNA relatedness values between strain IH32-1T and the type strains of S. globosus and S. toxytricini were determined as 55.2±4.7 and 38.3±2.5 %, respectively. Based on its chemotaxonomic, phenotypic and genotypic characteristics, strain IH32-1T is considered to represent a novel species in the genus Streptomyces, for which the name Streptomyces indicus sp. nov. is proposed. The type strain is IH32-1T ( = DSM 42001T = CGMCC 4.5727T).</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>21169463</pmid><doi>10.1099/ijs.0.029389-0</doi><tpages>5</tpages></addata></record> |
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| subjects | Animal, plant and microbial ecology Bacteriology Biological and medical sciences chemotaxonomy DNA, Bacterial - genetics fatty acids Fatty Acids - metabolism Fundamental and applied biological sciences. Psychology genotype Geologic Sediments - microbiology Indian Ocean menaquinones Microbial ecology Microbiology Molecular Sequence Data new species nucleotide sequences phenotype Phylogeny ribosomal RNA RNA, Ribosomal, 16S - genetics Seawater - microbiology sediments Streptomyces - classification Streptomyces - genetics Streptomyces - isolation & purification Streptomyces - metabolism Streptomyces globosus Streptomyces toxytricini Systematics Various environments (extraatmospheric space, air, water) |
| title | Streptomyces indicus sp. nov., an actinomycete isolated from deep-sea sediment |
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