Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation
The distance-2 graph coloring problem aims at partitioning the vertex set of a graph into the fewest sets consisting of vertices pairwise at distance greater than 2 from each other. Its applications include derivative computation in numerical optimization and channel assignment in radio networks. We...
Gespeichert in:
Veröffentlicht in: | SIAM journal on scientific computing 2010-01, Vol.32 (4), p.2418-2446 |
---|---|
Hauptverfasser: | , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 2446 |
---|---|
container_issue | 4 |
container_start_page | 2418 |
container_title | SIAM journal on scientific computing |
container_volume | 32 |
creator | Bozdağ, Doruk Çatalyürek, Ümt V. Gebremedhin, Assefaw H. Manne, Fredrik Boman, Erik G. Özgüner, Füsun |
description | The distance-2 graph coloring problem aims at partitioning the vertex set of a graph into the fewest sets consisting of vertices pairwise at distance greater than 2 from each other. Its applications include derivative computation in numerical optimization and channel assignment in radio networks. We present efficient, distributed-memory, parallel heuristic algorithms for this NP-hard problem as well as for two related problems used in the computation of Jacobians and Hessians. Parallel speedup is achieved through graph partitioning, speculative (iterative) coloring, and a bulk synchronous parallel-like organization of parallel computation. Results from experiments conducted on a PC cluster employing up to 96 processors and using large-size real-world as well as synthetically generated test graphs show that the algorithms are scalable. In terms of quality of solution, the algorithms perform remarkably well -- the numbers of colors used by the parallel algorithms are observed to be very close to the numbers used by their sequential counterparts, which in turn are quite often near optimal. Moreover, the experimental results show that the parallel distance-2 coloring algorithm compares favorably with the alternative approach of solving the distance-2 coloring problem on a graph G by first constructing the square graph G2 and then applying a parallel distance- 1 coloring algorithm on G2. Implementations of the algorithms are made available via the Zoltan toolkit. [PUBLICATION ABSTRACT] |
doi_str_mv | 10.1137/080732158 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_901689157</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>901689157</sourcerecordid><originalsourceid>FETCH-LOGICAL-c288t-7015574a8cde7cb383054866f1e5e4abdffed66b2b19144f4aac634790ddf2283</originalsourceid><addsrcrecordid>eNpd0EtPwzAMAOAIgcR4HPgHERfEoZCkSZMcp42XNMSE4FylrTsypc1I2kn792Qa4sDJlvzZso3QFSV3lObynigic0aFOkITSrTIJNXyeJ8XPFNMilN0FuOaEFpwzSaom9s4BFuNAzTZK3Q-7PDSBOMcODx1Kx_s8NVF3PqA99T0NWQMz7xLlX6FTd_gd3AmteNl8JWDhG2P5xDs1gx2C8l2m3FIue8v0ElrXITL33iOPh8fPmbP2eLt6WU2XWQ1U2rIJKFCSG5U3YCsq1zlRHBVFC0FAdxUTdtCUxQVq6imnLfcmLrIudSkaVrGVH6Obg5zN8F_jxCHsrOxBudMD36MpU7nK02FTPL6n1z7MfRpuVIpyrRihUjo9oDq4GMM0JabYDsTdiUl5f7t5d_b8x_xkXTe</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>881298265</pqid></control><display><type>article</type><title>Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation</title><source>SIAM Journals Online</source><creator>Bozdağ, Doruk ; Çatalyürek, Ümt V. ; Gebremedhin, Assefaw H. ; Manne, Fredrik ; Boman, Erik G. ; Özgüner, Füsun</creator><creatorcontrib>Bozdağ, Doruk ; Çatalyürek, Ümt V. ; Gebremedhin, Assefaw H. ; Manne, Fredrik ; Boman, Erik G. ; Özgüner, Füsun</creatorcontrib><description>The distance-2 graph coloring problem aims at partitioning the vertex set of a graph into the fewest sets consisting of vertices pairwise at distance greater than 2 from each other. Its applications include derivative computation in numerical optimization and channel assignment in radio networks. We present efficient, distributed-memory, parallel heuristic algorithms for this NP-hard problem as well as for two related problems used in the computation of Jacobians and Hessians. Parallel speedup is achieved through graph partitioning, speculative (iterative) coloring, and a bulk synchronous parallel-like organization of parallel computation. Results from experiments conducted on a PC cluster employing up to 96 processors and using large-size real-world as well as synthetically generated test graphs show that the algorithms are scalable. In terms of quality of solution, the algorithms perform remarkably well -- the numbers of colors used by the parallel algorithms are observed to be very close to the numbers used by their sequential counterparts, which in turn are quite often near optimal. Moreover, the experimental results show that the parallel distance-2 coloring algorithm compares favorably with the alternative approach of solving the distance-2 coloring problem on a graph G by first constructing the square graph G2 and then applying a parallel distance- 1 coloring algorithm on G2. Implementations of the algorithms are made available via the Zoltan toolkit. [PUBLICATION ABSTRACT]</description><identifier>ISSN: 1064-8275</identifier><identifier>EISSN: 1095-7197</identifier><identifier>DOI: 10.1137/080732158</identifier><language>eng</language><publisher>Philadelphia: Society for Industrial and Applied Mathematics</publisher><subject>Algorithms ; Cluster analysis ; Coloring ; Combinatorics ; Computation ; Derivatives ; Distributed memory ; Distributed processing ; Graph coloring ; Graphs ; Iterative methods ; Optimization ; Parallel processing ; Partitioning ; Studies</subject><ispartof>SIAM journal on scientific computing, 2010-01, Vol.32 (4), p.2418-2446</ispartof><rights>Copyright Society for Industrial and Applied Mathematics 2010</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c288t-7015574a8cde7cb383054866f1e5e4abdffed66b2b19144f4aac634790ddf2283</citedby><cites>FETCH-LOGICAL-c288t-7015574a8cde7cb383054866f1e5e4abdffed66b2b19144f4aac634790ddf2283</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3184,27924,27925</link.rule.ids></links><search><creatorcontrib>Bozdağ, Doruk</creatorcontrib><creatorcontrib>Çatalyürek, Ümt V.</creatorcontrib><creatorcontrib>Gebremedhin, Assefaw H.</creatorcontrib><creatorcontrib>Manne, Fredrik</creatorcontrib><creatorcontrib>Boman, Erik G.</creatorcontrib><creatorcontrib>Özgüner, Füsun</creatorcontrib><title>Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation</title><title>SIAM journal on scientific computing</title><description>The distance-2 graph coloring problem aims at partitioning the vertex set of a graph into the fewest sets consisting of vertices pairwise at distance greater than 2 from each other. Its applications include derivative computation in numerical optimization and channel assignment in radio networks. We present efficient, distributed-memory, parallel heuristic algorithms for this NP-hard problem as well as for two related problems used in the computation of Jacobians and Hessians. Parallel speedup is achieved through graph partitioning, speculative (iterative) coloring, and a bulk synchronous parallel-like organization of parallel computation. Results from experiments conducted on a PC cluster employing up to 96 processors and using large-size real-world as well as synthetically generated test graphs show that the algorithms are scalable. In terms of quality of solution, the algorithms perform remarkably well -- the numbers of colors used by the parallel algorithms are observed to be very close to the numbers used by their sequential counterparts, which in turn are quite often near optimal. Moreover, the experimental results show that the parallel distance-2 coloring algorithm compares favorably with the alternative approach of solving the distance-2 coloring problem on a graph G by first constructing the square graph G2 and then applying a parallel distance- 1 coloring algorithm on G2. Implementations of the algorithms are made available via the Zoltan toolkit. [PUBLICATION ABSTRACT]</description><subject>Algorithms</subject><subject>Cluster analysis</subject><subject>Coloring</subject><subject>Combinatorics</subject><subject>Computation</subject><subject>Derivatives</subject><subject>Distributed memory</subject><subject>Distributed processing</subject><subject>Graph coloring</subject><subject>Graphs</subject><subject>Iterative methods</subject><subject>Optimization</subject><subject>Parallel processing</subject><subject>Partitioning</subject><subject>Studies</subject><issn>1064-8275</issn><issn>1095-7197</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNpd0EtPwzAMAOAIgcR4HPgHERfEoZCkSZMcp42XNMSE4FylrTsypc1I2kn792Qa4sDJlvzZso3QFSV3lObynigic0aFOkITSrTIJNXyeJ8XPFNMilN0FuOaEFpwzSaom9s4BFuNAzTZK3Q-7PDSBOMcODx1Kx_s8NVF3PqA99T0NWQMz7xLlX6FTd_gd3AmteNl8JWDhG2P5xDs1gx2C8l2m3FIue8v0ElrXITL33iOPh8fPmbP2eLt6WU2XWQ1U2rIJKFCSG5U3YCsq1zlRHBVFC0FAdxUTdtCUxQVq6imnLfcmLrIudSkaVrGVH6Obg5zN8F_jxCHsrOxBudMD36MpU7nK02FTPL6n1z7MfRpuVIpyrRihUjo9oDq4GMM0JabYDsTdiUl5f7t5d_b8x_xkXTe</recordid><startdate>20100101</startdate><enddate>20100101</enddate><creator>Bozdağ, Doruk</creator><creator>Çatalyürek, Ümt V.</creator><creator>Gebremedhin, Assefaw H.</creator><creator>Manne, Fredrik</creator><creator>Boman, Erik G.</creator><creator>Özgüner, Füsun</creator><general>Society for Industrial and Applied Mathematics</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7WY</scope><scope>7WZ</scope><scope>7X2</scope><scope>7XB</scope><scope>87Z</scope><scope>88A</scope><scope>88F</scope><scope>88I</scope><scope>88K</scope><scope>8AL</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FK</scope><scope>8FL</scope><scope>8G5</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BEZIV</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FRNLG</scope><scope>F~G</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>JQ2</scope><scope>K60</scope><scope>K6~</scope><scope>K7-</scope><scope>KB.</scope><scope>L.-</scope><scope>L6V</scope><scope>LK8</scope><scope>M0C</scope><scope>M0K</scope><scope>M0N</scope><scope>M1Q</scope><scope>M2O</scope><scope>M2P</scope><scope>M2T</scope><scope>M7P</scope><scope>M7S</scope><scope>MBDVC</scope><scope>P5Z</scope><scope>P62</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PQBIZ</scope><scope>PQBZA</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>7SC</scope><scope>7TB</scope><scope>8FD</scope><scope>FR3</scope><scope>H8D</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope></search><sort><creationdate>20100101</creationdate><title>Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation</title><author>Bozdağ, Doruk ; Çatalyürek, Ümt V. ; Gebremedhin, Assefaw H. ; Manne, Fredrik ; Boman, Erik G. ; Özgüner, Füsun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c288t-7015574a8cde7cb383054866f1e5e4abdffed66b2b19144f4aac634790ddf2283</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Algorithms</topic><topic>Cluster analysis</topic><topic>Coloring</topic><topic>Combinatorics</topic><topic>Computation</topic><topic>Derivatives</topic><topic>Distributed memory</topic><topic>Distributed processing</topic><topic>Graph coloring</topic><topic>Graphs</topic><topic>Iterative methods</topic><topic>Optimization</topic><topic>Parallel processing</topic><topic>Partitioning</topic><topic>Studies</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bozdağ, Doruk</creatorcontrib><creatorcontrib>Çatalyürek, Ümt V.</creatorcontrib><creatorcontrib>Gebremedhin, Assefaw H.</creatorcontrib><creatorcontrib>Manne, Fredrik</creatorcontrib><creatorcontrib>Boman, Erik G.</creatorcontrib><creatorcontrib>Özgüner, Füsun</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Access via ABI/INFORM (ProQuest)</collection><collection>ABI/INFORM Global (PDF only)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ABI/INFORM Global (Alumni Edition)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Military Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>Telecommunications (Alumni Edition)</collection><collection>Computing Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ABI/INFORM Collection (Alumni Edition)</collection><collection>Research Library (Alumni Edition)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Business Premium Collection</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central Korea</collection><collection>Business Premium Collection (Alumni)</collection><collection>ABI/INFORM Global (Corporate)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Computer Science Collection</collection><collection>ProQuest Business Collection (Alumni Edition)</collection><collection>ProQuest Business Collection</collection><collection>Computer Science Database</collection><collection>Materials Science Database</collection><collection>ABI/INFORM Professional Advanced</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>ABI/INFORM Global</collection><collection>Agricultural Science Database</collection><collection>Computing Database</collection><collection>Military Database</collection><collection>Research Library</collection><collection>Science Database</collection><collection>Telecommunications Database</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Research Library (Corporate)</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Environmental Science Database</collection><collection>Materials Science Collection</collection><collection>ProQuest One Business</collection><collection>ProQuest One Business (Alumni)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>Computer and Information Systems Abstracts</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><jtitle>SIAM journal on scientific computing</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bozdağ, Doruk</au><au>Çatalyürek, Ümt V.</au><au>Gebremedhin, Assefaw H.</au><au>Manne, Fredrik</au><au>Boman, Erik G.</au><au>Özgüner, Füsun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation</atitle><jtitle>SIAM journal on scientific computing</jtitle><date>2010-01-01</date><risdate>2010</risdate><volume>32</volume><issue>4</issue><spage>2418</spage><epage>2446</epage><pages>2418-2446</pages><issn>1064-8275</issn><eissn>1095-7197</eissn><abstract>The distance-2 graph coloring problem aims at partitioning the vertex set of a graph into the fewest sets consisting of vertices pairwise at distance greater than 2 from each other. Its applications include derivative computation in numerical optimization and channel assignment in radio networks. We present efficient, distributed-memory, parallel heuristic algorithms for this NP-hard problem as well as for two related problems used in the computation of Jacobians and Hessians. Parallel speedup is achieved through graph partitioning, speculative (iterative) coloring, and a bulk synchronous parallel-like organization of parallel computation. Results from experiments conducted on a PC cluster employing up to 96 processors and using large-size real-world as well as synthetically generated test graphs show that the algorithms are scalable. In terms of quality of solution, the algorithms perform remarkably well -- the numbers of colors used by the parallel algorithms are observed to be very close to the numbers used by their sequential counterparts, which in turn are quite often near optimal. Moreover, the experimental results show that the parallel distance-2 coloring algorithm compares favorably with the alternative approach of solving the distance-2 coloring problem on a graph G by first constructing the square graph G2 and then applying a parallel distance- 1 coloring algorithm on G2. Implementations of the algorithms are made available via the Zoltan toolkit. [PUBLICATION ABSTRACT]</abstract><cop>Philadelphia</cop><pub>Society for Industrial and Applied Mathematics</pub><doi>10.1137/080732158</doi><tpages>29</tpages></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1064-8275 |
ispartof | SIAM journal on scientific computing, 2010-01, Vol.32 (4), p.2418-2446 |
issn | 1064-8275 1095-7197 |
language | eng |
recordid | cdi_proquest_miscellaneous_901689157 |
source | SIAM Journals Online |
subjects | Algorithms Cluster analysis Coloring Combinatorics Computation Derivatives Distributed memory Distributed processing Graph coloring Graphs Iterative methods Optimization Parallel processing Partitioning Studies |
title | Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-19T13%3A25%3A38IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Distributed-Memory%20Parallel%20Algorithms%20for%20Distance-2%20Coloring%20and%20Related%20Problems%20in%20Derivative%20Computation&rft.jtitle=SIAM%20journal%20on%20scientific%20computing&rft.au=Bozda%C4%9F,%20Doruk&rft.date=2010-01-01&rft.volume=32&rft.issue=4&rft.spage=2418&rft.epage=2446&rft.pages=2418-2446&rft.issn=1064-8275&rft.eissn=1095-7197&rft_id=info:doi/10.1137/080732158&rft_dat=%3Cproquest_cross%3E901689157%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=881298265&rft_id=info:pmid/&rfr_iscdi=true |