Genetic data of 15 autosomal STR loci: an analysis of the Araraquara population colonization (São Paulo, Brazil)
The genetic markers most commonly utilized to determine identity and in paternity testing are autosomal short tandem repeats (STRs); to interpret the DNA analysis, the results of a case have to be compared with a pertinent reference population. Thus, the aim of this work was to characterize the gene...
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| Veröffentlicht in: | Molecular biology reports 2011-11, Vol.38 (8), p.5397-5403 |
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| creator | Martins, Joyce Aparecida de Freitas Figueiredo, Raquel Yoshizaki, Cyntia Sumie Paneto, Greiciane Gaburro Cicarelli, Regina Maria Barretto |
| description | The genetic markers most commonly utilized to determine identity and in paternity testing are autosomal short tandem repeats (STRs); to interpret the DNA analysis, the results of a case have to be compared with a pertinent reference population. Thus, the aim of this work was to characterize the genetic profile of the population of Araraquara (São Paulo, Brazil) by analyzing 15 STR loci included in the PowerPlex
®
16 System and to correlate these data with the migration history of the population. No deviations from the Hardy–Weinberg equilibrium were observed for any of the loci, after Bonferroni’s correction. Forensic parameters exhibited high values, the most polymorphic loci being Penta E, D18S51 and FGA. An unweighted pair-group method with arithmetic mean (UPGMA) tree based on genetic distances showed that the current population of Araraquara is grouped with populations of the southeastern region of Brazil, which are close to the European group but distant from African and Amerindian populations. Estimates of admixture components revealed that the contributions to the population of Araraquara were 76% European, 18% African, and 6% Amerindian. |
| doi_str_mv | 10.1007/s11033-011-0693-6 |
| format | Article |
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®
16 System and to correlate these data with the migration history of the population. No deviations from the Hardy–Weinberg equilibrium were observed for any of the loci, after Bonferroni’s correction. Forensic parameters exhibited high values, the most polymorphic loci being Penta E, D18S51 and FGA. An unweighted pair-group method with arithmetic mean (UPGMA) tree based on genetic distances showed that the current population of Araraquara is grouped with populations of the southeastern region of Brazil, which are close to the European group but distant from African and Amerindian populations. Estimates of admixture components revealed that the contributions to the population of Araraquara were 76% European, 18% African, and 6% Amerindian.</description><identifier>ISSN: 0301-4851</identifier><identifier>EISSN: 1573-4978</identifier><identifier>DOI: 10.1007/s11033-011-0693-6</identifier><identifier>PMID: 21400199</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Anatomy ; Animal Biochemistry ; Biomedical and Life Sciences ; Brazil ; Chromosomes, Human - genetics ; Colonization ; Data processing ; Deoxyribonucleic acid ; DNA ; Female ; Forensic science ; Forensic Sciences ; Gene Frequency - genetics ; Genetic distance ; Genetic Loci - genetics ; Genetic markers ; Genetics, Population ; Geography ; Histology ; Humans ; Life Sciences ; Male ; Mathematics ; Microsatellite Repeats - genetics ; Migration ; Molecular biology ; Morphology ; Paternity ; Paternity testing ; Phylogeny ; Polymorphism ; Short tandem repeats</subject><ispartof>Molecular biology reports, 2011-11, Vol.38 (8), p.5397-5403</ispartof><rights>Springer Science+Business Media B.V. 2011</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c403t-209277b4e5fd47c2da9e8e829fc239a16f73c6fca43aa37d4d30ff31e747b1b83</citedby><cites>FETCH-LOGICAL-c403t-209277b4e5fd47c2da9e8e829fc239a16f73c6fca43aa37d4d30ff31e747b1b83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11033-011-0693-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11033-011-0693-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21400199$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Martins, Joyce Aparecida</creatorcontrib><creatorcontrib>de Freitas Figueiredo, Raquel</creatorcontrib><creatorcontrib>Yoshizaki, Cyntia Sumie</creatorcontrib><creatorcontrib>Paneto, Greiciane Gaburro</creatorcontrib><creatorcontrib>Cicarelli, Regina Maria Barretto</creatorcontrib><title>Genetic data of 15 autosomal STR loci: an analysis of the Araraquara population colonization (São Paulo, Brazil)</title><title>Molecular biology reports</title><addtitle>Mol Biol Rep</addtitle><addtitle>Mol Biol Rep</addtitle><description>The genetic markers most commonly utilized to determine identity and in paternity testing are autosomal short tandem repeats (STRs); to interpret the DNA analysis, the results of a case have to be compared with a pertinent reference population. Thus, the aim of this work was to characterize the genetic profile of the population of Araraquara (São Paulo, Brazil) by analyzing 15 STR loci included in the PowerPlex
®
16 System and to correlate these data with the migration history of the population. No deviations from the Hardy–Weinberg equilibrium were observed for any of the loci, after Bonferroni’s correction. Forensic parameters exhibited high values, the most polymorphic loci being Penta E, D18S51 and FGA. An unweighted pair-group method with arithmetic mean (UPGMA) tree based on genetic distances showed that the current population of Araraquara is grouped with populations of the southeastern region of Brazil, which are close to the European group but distant from African and Amerindian populations. Estimates of admixture components revealed that the contributions to the population of Araraquara were 76% European, 18% African, and 6% Amerindian.</description><subject>Animal Anatomy</subject><subject>Animal Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Brazil</subject><subject>Chromosomes, Human - genetics</subject><subject>Colonization</subject><subject>Data processing</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Female</subject><subject>Forensic science</subject><subject>Forensic Sciences</subject><subject>Gene Frequency - genetics</subject><subject>Genetic distance</subject><subject>Genetic Loci - genetics</subject><subject>Genetic markers</subject><subject>Genetics, Population</subject><subject>Geography</subject><subject>Histology</subject><subject>Humans</subject><subject>Life Sciences</subject><subject>Male</subject><subject>Mathematics</subject><subject>Microsatellite Repeats - genetics</subject><subject>Migration</subject><subject>Molecular biology</subject><subject>Morphology</subject><subject>Paternity</subject><subject>Paternity testing</subject><subject>Phylogeny</subject><subject>Polymorphism</subject><subject>Short tandem repeats</subject><issn>0301-4851</issn><issn>1573-4978</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kdFqFTEQhoNY7Gn1AbyR4I0VXJ3ZZDcb79pSq1BQbL0Oc7JZ3ZKzOSfZvWhfp4_SFzPLVgVBIUwI880_kI-x5whvEUC9S4ggRAGIBdRaFPUjtsJKiUJq1TxmKxCAhWwq3GcHKV0DgERVPWH7JUoA1HrFduducGNveUsj8dBxrDhNY0hhQ55fXn3lPtj-PachH_I3qU8zNf5w_DhSpN2UC9-G7eRp7MPAbfBh6G-Xx9Hl_V3gX2jy4Q0_iXTb-9dP2V5HPrlnD_ch-_bh7Or0Y3Hx-fzT6fFFYSWIsShBl0qtpau6VipbtqRd45pSd7YUmrDulLB1Z0kKIqFa2QroOoFOSbXGdSMO2asldxvDbnJpNJs-Wec9DS5MyWiAuhRQYiaP_ksioNKVAjWjL_9Cr8MU88ck0-imkRXIeTMukI0hpeg6s439huJNTjKzOLOIM1mcmcWZOs-8eAie1hvX_p74ZSoD5QKk3Bq-u_hn879TfwKUf6I9</recordid><startdate>20111101</startdate><enddate>20111101</enddate><creator>Martins, Joyce Aparecida</creator><creator>de Freitas Figueiredo, Raquel</creator><creator>Yoshizaki, Cyntia Sumie</creator><creator>Paneto, Greiciane Gaburro</creator><creator>Cicarelli, Regina Maria Barretto</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20111101</creationdate><title>Genetic data of 15 autosomal STR loci: an analysis of the Araraquara population colonization (São Paulo, Brazil)</title><author>Martins, Joyce Aparecida ; de Freitas Figueiredo, Raquel ; Yoshizaki, Cyntia Sumie ; Paneto, Greiciane Gaburro ; Cicarelli, Regina Maria Barretto</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c403t-209277b4e5fd47c2da9e8e829fc239a16f73c6fca43aa37d4d30ff31e747b1b83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Animal Anatomy</topic><topic>Animal Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Brazil</topic><topic>Chromosomes, Human - genetics</topic><topic>Colonization</topic><topic>Data processing</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Female</topic><topic>Forensic science</topic><topic>Forensic Sciences</topic><topic>Gene Frequency - genetics</topic><topic>Genetic distance</topic><topic>Genetic Loci - genetics</topic><topic>Genetic markers</topic><topic>Genetics, Population</topic><topic>Geography</topic><topic>Histology</topic><topic>Humans</topic><topic>Life Sciences</topic><topic>Male</topic><topic>Mathematics</topic><topic>Microsatellite Repeats - genetics</topic><topic>Migration</topic><topic>Molecular biology</topic><topic>Morphology</topic><topic>Paternity</topic><topic>Paternity testing</topic><topic>Phylogeny</topic><topic>Polymorphism</topic><topic>Short tandem repeats</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Martins, Joyce Aparecida</creatorcontrib><creatorcontrib>de Freitas Figueiredo, Raquel</creatorcontrib><creatorcontrib>Yoshizaki, Cyntia Sumie</creatorcontrib><creatorcontrib>Paneto, Greiciane Gaburro</creatorcontrib><creatorcontrib>Cicarelli, Regina Maria Barretto</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular biology reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Martins, Joyce Aparecida</au><au>de Freitas Figueiredo, Raquel</au><au>Yoshizaki, Cyntia Sumie</au><au>Paneto, Greiciane Gaburro</au><au>Cicarelli, Regina Maria Barretto</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic data of 15 autosomal STR loci: an analysis of the Araraquara population colonization (São Paulo, Brazil)</atitle><jtitle>Molecular biology reports</jtitle><stitle>Mol Biol Rep</stitle><addtitle>Mol Biol Rep</addtitle><date>2011-11-01</date><risdate>2011</risdate><volume>38</volume><issue>8</issue><spage>5397</spage><epage>5403</epage><pages>5397-5403</pages><issn>0301-4851</issn><eissn>1573-4978</eissn><abstract>The genetic markers most commonly utilized to determine identity and in paternity testing are autosomal short tandem repeats (STRs); to interpret the DNA analysis, the results of a case have to be compared with a pertinent reference population. Thus, the aim of this work was to characterize the genetic profile of the population of Araraquara (São Paulo, Brazil) by analyzing 15 STR loci included in the PowerPlex
®
16 System and to correlate these data with the migration history of the population. No deviations from the Hardy–Weinberg equilibrium were observed for any of the loci, after Bonferroni’s correction. Forensic parameters exhibited high values, the most polymorphic loci being Penta E, D18S51 and FGA. An unweighted pair-group method with arithmetic mean (UPGMA) tree based on genetic distances showed that the current population of Araraquara is grouped with populations of the southeastern region of Brazil, which are close to the European group but distant from African and Amerindian populations. Estimates of admixture components revealed that the contributions to the population of Araraquara were 76% European, 18% African, and 6% Amerindian.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>21400199</pmid><doi>10.1007/s11033-011-0693-6</doi><tpages>7</tpages></addata></record> |
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| subjects | Animal Anatomy Animal Biochemistry Biomedical and Life Sciences Brazil Chromosomes, Human - genetics Colonization Data processing Deoxyribonucleic acid DNA Female Forensic science Forensic Sciences Gene Frequency - genetics Genetic distance Genetic Loci - genetics Genetic markers Genetics, Population Geography Histology Humans Life Sciences Male Mathematics Microsatellite Repeats - genetics Migration Molecular biology Morphology Paternity Paternity testing Phylogeny Polymorphism Short tandem repeats |
| title | Genetic data of 15 autosomal STR loci: an analysis of the Araraquara population colonization (São Paulo, Brazil) |
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