MPID-T2: a database for sequence―structure-function analyses of pMHC and TR/pMHC structures
Sequence-structure-function information is critical in understanding the mechanism of pMHC and TR/pMHC binding and recognition. A database for sequence-structure-function information on pMHC and TR/pMHC interactions, MHC-Peptide Interaction Database-TR version 2 (MPID-T2), is now available augmented...
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| Veröffentlicht in: | Bioinformatics 2011-04, Vol.27 (8), p.1192-1193 |
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| container_title | Bioinformatics |
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| creator | JAVED MOHAMMED KHAN HARISH REDDY CHERUKU JOO CHUAN TONG RANGANATHAN, Shoba |
| description | Sequence-structure-function information is critical in understanding the mechanism of pMHC and TR/pMHC binding and recognition. A database for sequence-structure-function information on pMHC and TR/pMHC interactions, MHC-Peptide Interaction Database-TR version 2 (MPID-T2), is now available augmented with the latest PDB and IMGT/3Dstructure-DB data, advanced features and new parameters for the analysis of pMHC and TR/pMHC structures.
http://biolinfo.org/mpid-t2.
shoba.ranganathan@mq.edu.au
Supplementary data are available at Bioinformatics online. |
| doi_str_mv | 10.1093/bioinformatics/btr104 |
| format | Article |
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http://biolinfo.org/mpid-t2.
shoba.ranganathan@mq.edu.au
Supplementary data are available at Bioinformatics online.</description><identifier>ISSN: 1367-4803</identifier><identifier>EISSN: 1367-4811</identifier><identifier>EISSN: 1460-2059</identifier><identifier>DOI: 10.1093/bioinformatics/btr104</identifier><identifier>PMID: 21349870</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Animals ; Biological and medical sciences ; Databases, Protein ; Fundamental and applied biological sciences. Psychology ; General aspects ; Histocompatibility Antigens Class I - chemistry ; Histocompatibility Antigens Class II - chemistry ; Humans ; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) ; Peptides - chemistry ; Protein Binding ; Receptors, Antigen, T-Cell - chemistry ; Sequence Analysis, Protein ; Structure-Activity Relationship</subject><ispartof>Bioinformatics, 2011-04, Vol.27 (8), p.1192-1193</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c417t-16121ab7d0bf9721efb5d3ecfd577834ef23e348097d79c9f5f544ea3a8d38e83</citedby><cites>FETCH-LOGICAL-c417t-16121ab7d0bf9721efb5d3ecfd577834ef23e348097d79c9f5f544ea3a8d38e83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24036949$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21349870$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>JAVED MOHAMMED KHAN</creatorcontrib><creatorcontrib>HARISH REDDY CHERUKU</creatorcontrib><creatorcontrib>JOO CHUAN TONG</creatorcontrib><creatorcontrib>RANGANATHAN, Shoba</creatorcontrib><title>MPID-T2: a database for sequence―structure-function analyses of pMHC and TR/pMHC structures</title><title>Bioinformatics</title><addtitle>Bioinformatics</addtitle><description>Sequence-structure-function information is critical in understanding the mechanism of pMHC and TR/pMHC binding and recognition. A database for sequence-structure-function information on pMHC and TR/pMHC interactions, MHC-Peptide Interaction Database-TR version 2 (MPID-T2), is now available augmented with the latest PDB and IMGT/3Dstructure-DB data, advanced features and new parameters for the analysis of pMHC and TR/pMHC structures.
http://biolinfo.org/mpid-t2.
shoba.ranganathan@mq.edu.au
Supplementary data are available at Bioinformatics online.</description><subject>Animals</subject><subject>Biological and medical sciences</subject><subject>Databases, Protein</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General aspects</subject><subject>Histocompatibility Antigens Class I - chemistry</subject><subject>Histocompatibility Antigens Class II - chemistry</subject><subject>Humans</subject><subject>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</subject><subject>Peptides - chemistry</subject><subject>Protein Binding</subject><subject>Receptors, Antigen, T-Cell - chemistry</subject><subject>Sequence Analysis, Protein</subject><subject>Structure-Activity Relationship</subject><issn>1367-4803</issn><issn>1367-4811</issn><issn>1460-2059</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUtOwzAQhi0E4n0EUDaIVagntuOYHSpPCQRCZYkixxlLQWlSPMmiOy7BBTkJgZYiVqxmNPr-ef2MHQA_AW7EqKjaqvFtmNqucjQqugBcrrFtEKmOZQawvsq52GI7RC-cc8VVusm2EhDSZJpvs-e7h5vzeJKcRjYqbWcLSxgNbSPC1x4bhx9v79SF3nV9wNj3jeuqtolsY-s5IUWtj2Z31-OhUEaTx9F3vuJpj214WxPuL-Mue7q8mIyv49v7q5vx2W3sJOguhhQSsIUueeGNTgB9oUqBzpdK60xI9IlAMRxidKmNM155JSVaYbNSZJiJXXa86DsL7bA2dfm0Iod1bRtse8ozY0CBAfM_mYIykGgxkGpButASBfT5LFRTG-Y58PzLgvyvBfnCgkF3uJzQF1MsV6qfnw_A0RKw5Gztg21cRb-c5CI10ohPpbuVMA</recordid><startdate>20110415</startdate><enddate>20110415</enddate><creator>JAVED MOHAMMED KHAN</creator><creator>HARISH REDDY CHERUKU</creator><creator>JOO CHUAN TONG</creator><creator>RANGANATHAN, Shoba</creator><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope></search><sort><creationdate>20110415</creationdate><title>MPID-T2: a database for sequence―structure-function analyses of pMHC and TR/pMHC structures</title><author>JAVED MOHAMMED KHAN ; HARISH REDDY CHERUKU ; JOO CHUAN TONG ; RANGANATHAN, Shoba</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c417t-16121ab7d0bf9721efb5d3ecfd577834ef23e348097d79c9f5f544ea3a8d38e83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Animals</topic><topic>Biological and medical sciences</topic><topic>Databases, Protein</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General aspects</topic><topic>Histocompatibility Antigens Class I - chemistry</topic><topic>Histocompatibility Antigens Class II - chemistry</topic><topic>Humans</topic><topic>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</topic><topic>Peptides - chemistry</topic><topic>Protein Binding</topic><topic>Receptors, Antigen, T-Cell - chemistry</topic><topic>Sequence Analysis, Protein</topic><topic>Structure-Activity Relationship</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>JAVED MOHAMMED KHAN</creatorcontrib><creatorcontrib>HARISH REDDY CHERUKU</creatorcontrib><creatorcontrib>JOO CHUAN TONG</creatorcontrib><creatorcontrib>RANGANATHAN, Shoba</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>JAVED MOHAMMED KHAN</au><au>HARISH REDDY CHERUKU</au><au>JOO CHUAN TONG</au><au>RANGANATHAN, Shoba</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>MPID-T2: a database for sequence―structure-function analyses of pMHC and TR/pMHC structures</atitle><jtitle>Bioinformatics</jtitle><addtitle>Bioinformatics</addtitle><date>2011-04-15</date><risdate>2011</risdate><volume>27</volume><issue>8</issue><spage>1192</spage><epage>1193</epage><pages>1192-1193</pages><issn>1367-4803</issn><eissn>1367-4811</eissn><eissn>1460-2059</eissn><abstract>Sequence-structure-function information is critical in understanding the mechanism of pMHC and TR/pMHC binding and recognition. A database for sequence-structure-function information on pMHC and TR/pMHC interactions, MHC-Peptide Interaction Database-TR version 2 (MPID-T2), is now available augmented with the latest PDB and IMGT/3Dstructure-DB data, advanced features and new parameters for the analysis of pMHC and TR/pMHC structures.
http://biolinfo.org/mpid-t2.
shoba.ranganathan@mq.edu.au
Supplementary data are available at Bioinformatics online.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>21349870</pmid><doi>10.1093/bioinformatics/btr104</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1367-4803 |
| ispartof | Bioinformatics, 2011-04, Vol.27 (8), p.1192-1193 |
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| language | eng |
| recordid | cdi_proquest_miscellaneous_899151919 |
| source | Oxford Journals Open Access Collection; MEDLINE; EZB-FREE-00999 freely available EZB journals; PubMed Central; Alma/SFX Local Collection |
| subjects | Animals Biological and medical sciences Databases, Protein Fundamental and applied biological sciences. Psychology General aspects Histocompatibility Antigens Class I - chemistry Histocompatibility Antigens Class II - chemistry Humans Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Peptides - chemistry Protein Binding Receptors, Antigen, T-Cell - chemistry Sequence Analysis, Protein Structure-Activity Relationship |
| title | MPID-T2: a database for sequence―structure-function analyses of pMHC and TR/pMHC structures |
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