Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata
A bacterial strain designated KTW-12T was isolated from a reef-building coral in Kenting, Taiwan, and was characterized using a polyphasic taxonomic approach. Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C),...
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description | A bacterial strain designated KTW-12T was isolated from a reef-building coral in Kenting, Taiwan, and was characterized using a polyphasic taxonomic approach. Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.0–8.0), and with 0.5–6.0 % NaCl (optimum, 2 %). The major cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C14 : 0 and C16 : 0. The DNA G+C content was 47.8 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain KTW-12T was most closely related to Vibrio porteresiae MSSRF30T, with 94.8 % gene sequence similarity. Further multilocus sequence analysis using rpoA, recA and pyrH genes also revealed low levels of sequence similarity (74.6–85.0 %) with all species of the genus Vibrio with validly published names. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) elucidated that strain KTW-12T occupied a distinct phylogenetic position, forming a long branch that was not clustered with any other known species of the genus VIBRIO: Strain KTW-12T differed from V. porteresiae MSSRF30T in the ability to reduce nitrate to nitrite, hydrolysis of chitin, fermentation of sorbitol and production of arginine dihydrolase, valine arylamidase, cystine arylamidase and N-acetyl-β-glucosaminidase. On the basis of phenotypic, chemotaxonomic and phylogenetic distinctiveness, strain KTW-12T should be classified as representing a novel species, for which the name Vibrio stylophorae sp. nov. is proposed. The type strain is KTW-12T ( = BCRC 80105T = LMG 25357T). |
doi_str_mv | 10.1099/ijs.0.026666-0 |
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Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.0–8.0), and with 0.5–6.0 % NaCl (optimum, 2 %). The major cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C14 : 0 and C16 : 0. The DNA G+C content was 47.8 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain KTW-12T was most closely related to Vibrio porteresiae MSSRF30T, with 94.8 % gene sequence similarity. Further multilocus sequence analysis using rpoA, recA and pyrH genes also revealed low levels of sequence similarity (74.6–85.0 %) with all species of the genus Vibrio with validly published names. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) elucidated that strain KTW-12T occupied a distinct phylogenetic position, forming a long branch that was not clustered with any other known species of the genus VIBRIO: Strain KTW-12T differed from V. porteresiae MSSRF30T in the ability to reduce nitrate to nitrite, hydrolysis of chitin, fermentation of sorbitol and production of arginine dihydrolase, valine arylamidase, cystine arylamidase and N-acetyl-β-glucosaminidase. On the basis of phenotypic, chemotaxonomic and phylogenetic distinctiveness, strain KTW-12T should be classified as representing a novel species, for which the name Vibrio stylophorae sp. nov. is proposed. The type strain is KTW-12T ( = BCRC 80105T = LMG 25357T).</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.026666-0</identifier><identifier>PMID: 20935089</identifier><language>eng</language><publisher>Reading: International Union of Microbiological Societies</publisher><subject>Animal, plant and microbial ecology ; Animals ; Anthozoa - microbiology ; arginine deiminase ; Bacterial Proteins - genetics ; Bacterial Typing Techniques ; Bacteriology ; Base Composition ; beta-N-acetylhexosaminidase ; Biological and medical sciences ; chemotaxonomy ; chitin ; Cluster Analysis ; coral reefs ; cystine ; DNA ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; fatty acids ; Fatty Acids - analysis ; fermentation ; Fundamental and applied biological sciences. Psychology ; genes ; Hydrogen-Ion Concentration ; hydrolysis ; Microbial ecology ; Microbiology ; Molecular Sequence Data ; multilocus sequence typing ; new species ; nitrates ; nitrites ; nucleotide sequences ; Phylogeny ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; sequence homology ; sodium chloride ; Sodium Chloride - metabolism ; sorbitol ; Systematics ; Taiwan ; Temperature ; valine ; Various environments (extraatmospheric space, air, water) ; Vibrio ; Vibrio - classification ; Vibrio - genetics ; Vibrio - isolation & purification ; Vibrio - physiology</subject><ispartof>International journal of systematic and evolutionary microbiology, 2011-09, Vol.61 (Pt 9), p.2180-2185</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c348t-93011c3492c7eea9824077113a96892065afc0469a3bd2d205d74aae8d4541fd3</citedby><cites>FETCH-LOGICAL-c348t-93011c3492c7eea9824077113a96892065afc0469a3bd2d205d74aae8d4541fd3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24520520$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20935089$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sheu, Shih-Yi</creatorcontrib><creatorcontrib>Jiang, Sing-Rong</creatorcontrib><creatorcontrib>Chen, Chaolun Allen</creatorcontrib><creatorcontrib>Wang, Jih-Terng</creatorcontrib><creatorcontrib>Chen, Wen-Ming</creatorcontrib><title>Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A bacterial strain designated KTW-12T was isolated from a reef-building coral in Kenting, Taiwan, and was characterized using a polyphasic taxonomic approach. Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.0–8.0), and with 0.5–6.0 % NaCl (optimum, 2 %). The major cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C14 : 0 and C16 : 0. The DNA G+C content was 47.8 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain KTW-12T was most closely related to Vibrio porteresiae MSSRF30T, with 94.8 % gene sequence similarity. Further multilocus sequence analysis using rpoA, recA and pyrH genes also revealed low levels of sequence similarity (74.6–85.0 %) with all species of the genus Vibrio with validly published names. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) elucidated that strain KTW-12T occupied a distinct phylogenetic position, forming a long branch that was not clustered with any other known species of the genus VIBRIO: Strain KTW-12T differed from V. porteresiae MSSRF30T in the ability to reduce nitrate to nitrite, hydrolysis of chitin, fermentation of sorbitol and production of arginine dihydrolase, valine arylamidase, cystine arylamidase and N-acetyl-β-glucosaminidase. On the basis of phenotypic, chemotaxonomic and phylogenetic distinctiveness, strain KTW-12T should be classified as representing a novel species, for which the name Vibrio stylophorae sp. nov. is proposed. The type strain is KTW-12T ( = BCRC 80105T = LMG 25357T).</description><subject>Animal, plant and microbial ecology</subject><subject>Animals</subject><subject>Anthozoa - microbiology</subject><subject>arginine deiminase</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>beta-N-acetylhexosaminidase</subject><subject>Biological and medical sciences</subject><subject>chemotaxonomy</subject><subject>chitin</subject><subject>Cluster Analysis</subject><subject>coral reefs</subject><subject>cystine</subject><subject>DNA</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>fatty acids</subject><subject>Fatty Acids - analysis</subject><subject>fermentation</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>genes</subject><subject>Hydrogen-Ion Concentration</subject><subject>hydrolysis</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>multilocus sequence typing</subject><subject>new species</subject><subject>nitrates</subject><subject>nitrites</subject><subject>nucleotide sequences</subject><subject>Phylogeny</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>sodium chloride</subject><subject>Sodium Chloride - metabolism</subject><subject>sorbitol</subject><subject>Systematics</subject><subject>Taiwan</subject><subject>Temperature</subject><subject>valine</subject><subject>Various environments (extraatmospheric space, air, water)</subject><subject>Vibrio</subject><subject>Vibrio - classification</subject><subject>Vibrio - genetics</subject><subject>Vibrio - isolation & purification</subject><subject>Vibrio - physiology</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkUtPwzAQhC0EoqVw5Qi-IC4krB9J4yOqeEmVOJQibpaTOK2rNA52itR_j6uUwl52ZH0zWo0RuiQQExDi3qx8DDHQNEwER2hIeBAJMH78Tw_QmfcrgPAAcIoGFARLIBND9Plhcmcs9t22tu3SOqWxb2Pc2O_4Dhtva9XpElfOrnG31NhpXUX5xtSlaRa4CHyNZwcvbo3vTB086hydVKr2-mK_R2j-9Pg-eYmmb8-vk4dpVDCedZFgQEiQghZjrZXIKIfxmBCmRJoJCmmiqgJ4KhTLS1pSSMoxV0pnJU84qUo2Qrd9buvs10b7Tq6NL3S4odF242WWZYwDpSKQcU8WznrvdCVbZ9bKbSUBuStThjIlyL5MCcFwtY_e5GtdHvDf9gJwsweUL1RdOdUUxv9xPAn30l3Qdc9Vykq1cIGZzyiQpP8RmrIfmNmFqg</recordid><startdate>20110901</startdate><enddate>20110901</enddate><creator>Sheu, Shih-Yi</creator><creator>Jiang, Sing-Rong</creator><creator>Chen, Chaolun Allen</creator><creator>Wang, Jih-Terng</creator><creator>Chen, Wen-Ming</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20110901</creationdate><title>Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata</title><author>Sheu, Shih-Yi ; Jiang, Sing-Rong ; Chen, Chaolun Allen ; Wang, Jih-Terng ; Chen, Wen-Ming</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c348t-93011c3492c7eea9824077113a96892065afc0469a3bd2d205d74aae8d4541fd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Animal, plant and microbial ecology</topic><topic>Animals</topic><topic>Anthozoa - microbiology</topic><topic>arginine deiminase</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>beta-N-acetylhexosaminidase</topic><topic>Biological and medical sciences</topic><topic>chemotaxonomy</topic><topic>chitin</topic><topic>Cluster Analysis</topic><topic>coral reefs</topic><topic>cystine</topic><topic>DNA</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>fatty acids</topic><topic>Fatty Acids - analysis</topic><topic>fermentation</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>genes</topic><topic>Hydrogen-Ion Concentration</topic><topic>hydrolysis</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>multilocus sequence typing</topic><topic>new species</topic><topic>nitrates</topic><topic>nitrites</topic><topic>nucleotide sequences</topic><topic>Phylogeny</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>sodium chloride</topic><topic>Sodium Chloride - metabolism</topic><topic>sorbitol</topic><topic>Systematics</topic><topic>Taiwan</topic><topic>Temperature</topic><topic>valine</topic><topic>Various environments (extraatmospheric space, air, water)</topic><topic>Vibrio</topic><topic>Vibrio - classification</topic><topic>Vibrio - genetics</topic><topic>Vibrio - isolation & purification</topic><topic>Vibrio - physiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sheu, Shih-Yi</creatorcontrib><creatorcontrib>Jiang, Sing-Rong</creatorcontrib><creatorcontrib>Chen, Chaolun Allen</creatorcontrib><creatorcontrib>Wang, Jih-Terng</creatorcontrib><creatorcontrib>Chen, Wen-Ming</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sheu, Shih-Yi</au><au>Jiang, Sing-Rong</au><au>Chen, Chaolun Allen</au><au>Wang, Jih-Terng</au><au>Chen, Wen-Ming</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2011-09-01</date><risdate>2011</risdate><volume>61</volume><issue>Pt 9</issue><spage>2180</spage><epage>2185</epage><pages>2180-2185</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A bacterial strain designated KTW-12T was isolated from a reef-building coral in Kenting, Taiwan, and was characterized using a polyphasic taxonomic approach. Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.0–8.0), and with 0.5–6.0 % NaCl (optimum, 2 %). The major cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C14 : 0 and C16 : 0. The DNA G+C content was 47.8 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain KTW-12T was most closely related to Vibrio porteresiae MSSRF30T, with 94.8 % gene sequence similarity. Further multilocus sequence analysis using rpoA, recA and pyrH genes also revealed low levels of sequence similarity (74.6–85.0 %) with all species of the genus Vibrio with validly published names. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) elucidated that strain KTW-12T occupied a distinct phylogenetic position, forming a long branch that was not clustered with any other known species of the genus VIBRIO: Strain KTW-12T differed from V. porteresiae MSSRF30T in the ability to reduce nitrate to nitrite, hydrolysis of chitin, fermentation of sorbitol and production of arginine dihydrolase, valine arylamidase, cystine arylamidase and N-acetyl-β-glucosaminidase. On the basis of phenotypic, chemotaxonomic and phylogenetic distinctiveness, strain KTW-12T should be classified as representing a novel species, for which the name Vibrio stylophorae sp. nov. is proposed. The type strain is KTW-12T ( = BCRC 80105T = LMG 25357T).</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>20935089</pmid><doi>10.1099/ijs.0.026666-0</doi><tpages>6</tpages></addata></record> |
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subjects | Animal, plant and microbial ecology Animals Anthozoa - microbiology arginine deiminase Bacterial Proteins - genetics Bacterial Typing Techniques Bacteriology Base Composition beta-N-acetylhexosaminidase Biological and medical sciences chemotaxonomy chitin Cluster Analysis coral reefs cystine DNA DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics fatty acids Fatty Acids - analysis fermentation Fundamental and applied biological sciences. Psychology genes Hydrogen-Ion Concentration hydrolysis Microbial ecology Microbiology Molecular Sequence Data multilocus sequence typing new species nitrates nitrites nucleotide sequences Phylogeny ribosomal RNA RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA sequence homology sodium chloride Sodium Chloride - metabolism sorbitol Systematics Taiwan Temperature valine Various environments (extraatmospheric space, air, water) Vibrio Vibrio - classification Vibrio - genetics Vibrio - isolation & purification Vibrio - physiology |
title | Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata |
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