Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata

A bacterial strain designated KTW-12T was isolated from a reef-building coral in Kenting, Taiwan, and was characterized using a polyphasic taxonomic approach. Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C),...

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Veröffentlicht in:International journal of systematic and evolutionary microbiology 2011-09, Vol.61 (Pt 9), p.2180-2185
Hauptverfasser: Sheu, Shih-Yi, Jiang, Sing-Rong, Chen, Chaolun Allen, Wang, Jih-Terng, Chen, Wen-Ming
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container_issue Pt 9
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container_title International journal of systematic and evolutionary microbiology
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creator Sheu, Shih-Yi
Jiang, Sing-Rong
Chen, Chaolun Allen
Wang, Jih-Terng
Chen, Wen-Ming
description A bacterial strain designated KTW-12T was isolated from a reef-building coral in Kenting, Taiwan, and was characterized using a polyphasic taxonomic approach. Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.0–8.0), and with 0.5–6.0 % NaCl (optimum, 2 %). The major cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C14 : 0 and C16 : 0. The DNA G+C content was 47.8 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain KTW-12T was most closely related to Vibrio porteresiae MSSRF30T, with 94.8 % gene sequence similarity. Further multilocus sequence analysis using rpoA, recA and pyrH genes also revealed low levels of sequence similarity (74.6–85.0 %) with all species of the genus Vibrio with validly published names. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) elucidated that strain KTW-12T occupied a distinct phylogenetic position, forming a long branch that was not clustered with any other known species of the genus VIBRIO: Strain KTW-12T differed from V. porteresiae MSSRF30T in the ability to reduce nitrate to nitrite, hydrolysis of chitin, fermentation of sorbitol and production of arginine dihydrolase, valine arylamidase, cystine arylamidase and N-acetyl-β-glucosaminidase. On the basis of phenotypic, chemotaxonomic and phylogenetic distinctiveness, strain KTW-12T should be classified as representing a novel species, for which the name Vibrio stylophorae sp. nov. is proposed. The type strain is KTW-12T ( = BCRC 80105T = LMG 25357T).
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Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.0–8.0), and with 0.5–6.0 % NaCl (optimum, 2 %). The major cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C14 : 0 and C16 : 0. The DNA G+C content was 47.8 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain KTW-12T was most closely related to Vibrio porteresiae MSSRF30T, with 94.8 % gene sequence similarity. Further multilocus sequence analysis using rpoA, recA and pyrH genes also revealed low levels of sequence similarity (74.6–85.0 %) with all species of the genus Vibrio with validly published names. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) elucidated that strain KTW-12T occupied a distinct phylogenetic position, forming a long branch that was not clustered with any other known species of the genus VIBRIO: Strain KTW-12T differed from V. porteresiae MSSRF30T in the ability to reduce nitrate to nitrite, hydrolysis of chitin, fermentation of sorbitol and production of arginine dihydrolase, valine arylamidase, cystine arylamidase and N-acetyl-β-glucosaminidase. On the basis of phenotypic, chemotaxonomic and phylogenetic distinctiveness, strain KTW-12T should be classified as representing a novel species, for which the name Vibrio stylophorae sp. nov. is proposed. 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Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.0–8.0), and with 0.5–6.0 % NaCl (optimum, 2 %). The major cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C14 : 0 and C16 : 0. The DNA G+C content was 47.8 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain KTW-12T was most closely related to Vibrio porteresiae MSSRF30T, with 94.8 % gene sequence similarity. Further multilocus sequence analysis using rpoA, recA and pyrH genes also revealed low levels of sequence similarity (74.6–85.0 %) with all species of the genus Vibrio with validly published names. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) elucidated that strain KTW-12T occupied a distinct phylogenetic position, forming a long branch that was not clustered with any other known species of the genus VIBRIO: Strain KTW-12T differed from V. porteresiae MSSRF30T in the ability to reduce nitrate to nitrite, hydrolysis of chitin, fermentation of sorbitol and production of arginine dihydrolase, valine arylamidase, cystine arylamidase and N-acetyl-β-glucosaminidase. On the basis of phenotypic, chemotaxonomic and phylogenetic distinctiveness, strain KTW-12T should be classified as representing a novel species, for which the name Vibrio stylophorae sp. nov. is proposed. 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Psychology</subject><subject>genes</subject><subject>Hydrogen-Ion Concentration</subject><subject>hydrolysis</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>multilocus sequence typing</subject><subject>new species</subject><subject>nitrates</subject><subject>nitrites</subject><subject>nucleotide sequences</subject><subject>Phylogeny</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>sodium chloride</subject><subject>Sodium Chloride - metabolism</subject><subject>sorbitol</subject><subject>Systematics</subject><subject>Taiwan</subject><subject>Temperature</subject><subject>valine</subject><subject>Various environments (extraatmospheric space, air, water)</subject><subject>Vibrio</subject><subject>Vibrio - classification</subject><subject>Vibrio - genetics</subject><subject>Vibrio - isolation &amp; purification</subject><subject>Vibrio - physiology</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkUtPwzAQhC0EoqVw5Qi-IC4krB9J4yOqeEmVOJQibpaTOK2rNA52itR_j6uUwl52ZH0zWo0RuiQQExDi3qx8DDHQNEwER2hIeBAJMH78Tw_QmfcrgPAAcIoGFARLIBND9Plhcmcs9t22tu3SOqWxb2Pc2O_4Dhtva9XpElfOrnG31NhpXUX5xtSlaRa4CHyNZwcvbo3vTB086hydVKr2-mK_R2j-9Pg-eYmmb8-vk4dpVDCedZFgQEiQghZjrZXIKIfxmBCmRJoJCmmiqgJ4KhTLS1pSSMoxV0pnJU84qUo2Qrd9buvs10b7Tq6NL3S4odF242WWZYwDpSKQcU8WznrvdCVbZ9bKbSUBuStThjIlyL5MCcFwtY_e5GtdHvDf9gJwsweUL1RdOdUUxv9xPAn30l3Qdc9Vykq1cIGZzyiQpP8RmrIfmNmFqg</recordid><startdate>20110901</startdate><enddate>20110901</enddate><creator>Sheu, Shih-Yi</creator><creator>Jiang, Sing-Rong</creator><creator>Chen, Chaolun Allen</creator><creator>Wang, Jih-Terng</creator><creator>Chen, Wen-Ming</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20110901</creationdate><title>Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata</title><author>Sheu, Shih-Yi ; Jiang, Sing-Rong ; Chen, Chaolun Allen ; Wang, Jih-Terng ; Chen, Wen-Ming</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c348t-93011c3492c7eea9824077113a96892065afc0469a3bd2d205d74aae8d4541fd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Animal, plant and microbial ecology</topic><topic>Animals</topic><topic>Anthozoa - microbiology</topic><topic>arginine deiminase</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>beta-N-acetylhexosaminidase</topic><topic>Biological and medical sciences</topic><topic>chemotaxonomy</topic><topic>chitin</topic><topic>Cluster Analysis</topic><topic>coral reefs</topic><topic>cystine</topic><topic>DNA</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>fatty acids</topic><topic>Fatty Acids - analysis</topic><topic>fermentation</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>genes</topic><topic>Hydrogen-Ion Concentration</topic><topic>hydrolysis</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>multilocus sequence typing</topic><topic>new species</topic><topic>nitrates</topic><topic>nitrites</topic><topic>nucleotide sequences</topic><topic>Phylogeny</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>sodium chloride</topic><topic>Sodium Chloride - metabolism</topic><topic>sorbitol</topic><topic>Systematics</topic><topic>Taiwan</topic><topic>Temperature</topic><topic>valine</topic><topic>Various environments (extraatmospheric space, air, water)</topic><topic>Vibrio</topic><topic>Vibrio - classification</topic><topic>Vibrio - genetics</topic><topic>Vibrio - isolation &amp; purification</topic><topic>Vibrio - physiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sheu, Shih-Yi</creatorcontrib><creatorcontrib>Jiang, Sing-Rong</creatorcontrib><creatorcontrib>Chen, Chaolun Allen</creatorcontrib><creatorcontrib>Wang, Jih-Terng</creatorcontrib><creatorcontrib>Chen, Wen-Ming</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sheu, Shih-Yi</au><au>Jiang, Sing-Rong</au><au>Chen, Chaolun Allen</au><au>Wang, Jih-Terng</au><au>Chen, Wen-Ming</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2011-09-01</date><risdate>2011</risdate><volume>61</volume><issue>Pt 9</issue><spage>2180</spage><epage>2185</epage><pages>2180-2185</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A bacterial strain designated KTW-12T was isolated from a reef-building coral in Kenting, Taiwan, and was characterized using a polyphasic taxonomic approach. Strain KTW-12T was Gram-negative, semi-transparent, slightly curved rod-shaped, and non-motile. Growth occurred at 15–35 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.0–8.0), and with 0.5–6.0 % NaCl (optimum, 2 %). The major cellular fatty acids were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C14 : 0 and C16 : 0. The DNA G+C content was 47.8 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain KTW-12T was most closely related to Vibrio porteresiae MSSRF30T, with 94.8 % gene sequence similarity. Further multilocus sequence analysis using rpoA, recA and pyrH genes also revealed low levels of sequence similarity (74.6–85.0 %) with all species of the genus Vibrio with validly published names. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) elucidated that strain KTW-12T occupied a distinct phylogenetic position, forming a long branch that was not clustered with any other known species of the genus VIBRIO: Strain KTW-12T differed from V. porteresiae MSSRF30T in the ability to reduce nitrate to nitrite, hydrolysis of chitin, fermentation of sorbitol and production of arginine dihydrolase, valine arylamidase, cystine arylamidase and N-acetyl-β-glucosaminidase. On the basis of phenotypic, chemotaxonomic and phylogenetic distinctiveness, strain KTW-12T should be classified as representing a novel species, for which the name Vibrio stylophorae sp. nov. is proposed. The type strain is KTW-12T ( = BCRC 80105T = LMG 25357T).</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>20935089</pmid><doi>10.1099/ijs.0.026666-0</doi><tpages>6</tpages></addata></record>
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subjects Animal, plant and microbial ecology
Animals
Anthozoa - microbiology
arginine deiminase
Bacterial Proteins - genetics
Bacterial Typing Techniques
Bacteriology
Base Composition
beta-N-acetylhexosaminidase
Biological and medical sciences
chemotaxonomy
chitin
Cluster Analysis
coral reefs
cystine
DNA
DNA, Bacterial - chemistry
DNA, Bacterial - genetics
DNA, Ribosomal - chemistry
DNA, Ribosomal - genetics
fatty acids
Fatty Acids - analysis
fermentation
Fundamental and applied biological sciences. Psychology
genes
Hydrogen-Ion Concentration
hydrolysis
Microbial ecology
Microbiology
Molecular Sequence Data
multilocus sequence typing
new species
nitrates
nitrites
nucleotide sequences
Phylogeny
ribosomal RNA
RNA, Ribosomal, 16S - genetics
Sequence Analysis, DNA
sequence homology
sodium chloride
Sodium Chloride - metabolism
sorbitol
Systematics
Taiwan
Temperature
valine
Various environments (extraatmospheric space, air, water)
Vibrio
Vibrio - classification
Vibrio - genetics
Vibrio - isolation & purification
Vibrio - physiology
title Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata
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