molecular basis of quantitative variation in foliar secondary metabolites in Eucalyptus globulus
• Eucalyptus is characterized by high foliar concentrations of plant secondary metabolites with marked qualitative and quantitative variation within a single species. Secondary metabolites in eucalypts are important mediators of a diverse community of herbivores. • We used a candidate gene approach...
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| Veröffentlicht in: | The New phytologist 2011-09, Vol.191 (4), p.1041-1053 |
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| creator | Külheim, Carsten Yeoh, Suat Hui Wallis, Ian R. Laffan, Shawn Moran, Gavin F. Foley, William J. |
| description | • Eucalyptus is characterized by high foliar concentrations of plant secondary metabolites with marked qualitative and quantitative variation within a single species. Secondary metabolites in eucalypts are important mediators of a diverse community of herbivores. • We used a candidate gene approach to investigate genetic associations between 195 single nucleotide polymorphisms (SNPs) from 24 candidate genes and 33 traits related to secondary metabolites in the Tasmanian Blue Gum (Eucalyptus globulus). • We discovered 37 significant associations (false discovery rate (FDR) Q < 0.05) across 11 candidate genes and 19 traits. The effects of SNPs on phenotypic variation were within the expected range (0.018 < r² < 0.061) for forest trees. Whereas most marker effects were nonadditive, two alleles from two consecutive genes in the methylerythritol phosphate pathway (MEP) showed additive effects. • This study successfully links allelic variants to ecologically important phenotypes which can have a large impact on the entire community. It is one of very few studies to identify the genetic variants of a foundation tree that influences ecosystem function. |
| doi_str_mv | 10.1111/j.1469-8137.2011.03769.x |
| format | Article |
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Secondary metabolites in eucalypts are important mediators of a diverse community of herbivores. • We used a candidate gene approach to investigate genetic associations between 195 single nucleotide polymorphisms (SNPs) from 24 candidate genes and 33 traits related to secondary metabolites in the Tasmanian Blue Gum (Eucalyptus globulus). • We discovered 37 significant associations (false discovery rate (FDR) Q < 0.05) across 11 candidate genes and 19 traits. The effects of SNPs on phenotypic variation were within the expected range (0.018 < r² < 0.061) for forest trees. Whereas most marker effects were nonadditive, two alleles from two consecutive genes in the methylerythritol phosphate pathway (MEP) showed additive effects. • This study successfully links allelic variants to ecologically important phenotypes which can have a large impact on the entire community. It is one of very few studies to identify the genetic variants of a foundation tree that influences ecosystem function.</description><identifier>ISSN: 0028-646X</identifier><identifier>EISSN: 1469-8137</identifier><identifier>DOI: 10.1111/j.1469-8137.2011.03769.x</identifier><identifier>PMID: 21609332</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>additive effect ; Additives ; Alkyl and Aryl Transferases - metabolism ; Alleles ; Cyclohexanols - metabolism ; Ecological effects ; Ecological genetics ; ecosystems ; Eucalyptol ; Eucalyptus ; Eucalyptus - chemistry ; Eucalyptus - genetics ; Eucalyptus - metabolism ; Eucalyptus globulus ; Exons ; flavonoids ; forest trees ; Gene Frequency ; Genes ; Genes, Plant ; genetic association ; Genetic diversity ; Genetic loci ; Genetic Markers ; Genetic variance ; Genetic variation ; Genotype ; Herbivores ; Introns ; Linkage Disequilibrium ; Metabolites ; Metabolome ; Monoterpenes - metabolism ; Nucleotides ; phenotype ; Phenotypes ; Phenotypic traits ; Phenotypic variation ; Phenotypic variations ; Phosphates ; Plant Leaves - chemistry ; Plant Leaves - metabolism ; plant secondary metabolites ; plant–herbivore interaction ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Secondary metabolites ; Sesquiterpenes ; Single-nucleotide polymorphism ; Species Specificity ; Terpenes</subject><ispartof>The New phytologist, 2011-09, Vol.191 (4), p.1041-1053</ispartof><rights>Copyright © 2011 New Phytologist Trust</rights><rights>2011 The Authors. New Phytologist © 2011 New Phytologist Trust</rights><rights>2011 The Authors. New Phytologist © 2011 New Phytologist Trust.</rights><rights>Copyright Wiley Subscription Services, Inc. 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Secondary metabolites in eucalypts are important mediators of a diverse community of herbivores. • We used a candidate gene approach to investigate genetic associations between 195 single nucleotide polymorphisms (SNPs) from 24 candidate genes and 33 traits related to secondary metabolites in the Tasmanian Blue Gum (Eucalyptus globulus). • We discovered 37 significant associations (false discovery rate (FDR) Q < 0.05) across 11 candidate genes and 19 traits. The effects of SNPs on phenotypic variation were within the expected range (0.018 < r² < 0.061) for forest trees. Whereas most marker effects were nonadditive, two alleles from two consecutive genes in the methylerythritol phosphate pathway (MEP) showed additive effects. • This study successfully links allelic variants to ecologically important phenotypes which can have a large impact on the entire community. It is one of very few studies to identify the genetic variants of a foundation tree that influences ecosystem function.</description><subject>additive effect</subject><subject>Additives</subject><subject>Alkyl and Aryl Transferases - metabolism</subject><subject>Alleles</subject><subject>Cyclohexanols - metabolism</subject><subject>Ecological effects</subject><subject>Ecological genetics</subject><subject>ecosystems</subject><subject>Eucalyptol</subject><subject>Eucalyptus</subject><subject>Eucalyptus - chemistry</subject><subject>Eucalyptus - genetics</subject><subject>Eucalyptus - metabolism</subject><subject>Eucalyptus globulus</subject><subject>Exons</subject><subject>flavonoids</subject><subject>forest trees</subject><subject>Gene Frequency</subject><subject>Genes</subject><subject>Genes, Plant</subject><subject>genetic association</subject><subject>Genetic diversity</subject><subject>Genetic loci</subject><subject>Genetic Markers</subject><subject>Genetic variance</subject><subject>Genetic variation</subject><subject>Genotype</subject><subject>Herbivores</subject><subject>Introns</subject><subject>Linkage Disequilibrium</subject><subject>Metabolites</subject><subject>Metabolome</subject><subject>Monoterpenes - metabolism</subject><subject>Nucleotides</subject><subject>phenotype</subject><subject>Phenotypes</subject><subject>Phenotypic traits</subject><subject>Phenotypic variation</subject><subject>Phenotypic variations</subject><subject>Phosphates</subject><subject>Plant Leaves - chemistry</subject><subject>Plant Leaves - metabolism</subject><subject>plant secondary metabolites</subject><subject>plant–herbivore interaction</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Quantitative Trait Loci</subject><subject>Secondary metabolites</subject><subject>Sesquiterpenes</subject><subject>Single-nucleotide polymorphism</subject><subject>Species Specificity</subject><subject>Terpenes</subject><issn>0028-646X</issn><issn>1469-8137</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNUl1v1SAYJkbjjtOfoJJ44VUrX6X0wguzTLdkURNd4h1SCgsNLWdQ5s6_l65zJl7JDW94PuB9XgCAGNW4rHdjjRnvKoFpWxOEcY1oy7v69hHYPQCPwQ4hIirO-I8j8CylESHUNZw8BUcEc9RRSnbg5xS80dmrCHuVXILBwuus5sUtanE3Bt6o6EoVZuhmaIN3hZmMDvOg4gFOZlF9OVxMWvHTrJU_7Jec4JUPffY5PQdPrPLJvLjfj8Hlx9PvJ2fVxZdP5ycfLirdINFVhnTcEtUSygfCBe2pHUxj27axuuBEtB1jAxa8oXqwTDcNNgYLhrlijBlEj8HbzXcfw3U2aZGTS9p4r2YTcpJCUFp6bnFhvvmHOYYc5_I4SRrMW8IEFoUlNpaOIaVorNxHN5WeJUZyHYIc5Zq1XLOW6xDk3RDkbZG-ur8g95MZHoR_Ui-E9xvhl_Pm8N_G8vPXs7Uq-pebfkxLiH_9keBdCbDgrzfcqiDVVXRJXn4rTqz8AEQ6wuhvdLeojw</recordid><startdate>201109</startdate><enddate>201109</enddate><creator>Külheim, Carsten</creator><creator>Yeoh, Suat Hui</creator><creator>Wallis, Ian R.</creator><creator>Laffan, Shawn</creator><creator>Moran, Gavin F.</creator><creator>Foley, William J.</creator><general>Blackwell Publishing Ltd</general><general>John Wiley & Sons</general><general>Wiley Subscription Services, Inc</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7SN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201109</creationdate><title>molecular basis of quantitative variation in foliar secondary metabolites in Eucalyptus globulus</title><author>Külheim, Carsten ; Yeoh, Suat Hui ; Wallis, Ian R. ; Laffan, Shawn ; Moran, Gavin F. ; Foley, William J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5089-e296f2a7236d2683b3fde5f775fc089287944d18653cdf4c551ee18416a444e03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>additive effect</topic><topic>Additives</topic><topic>Alkyl and Aryl Transferases - metabolism</topic><topic>Alleles</topic><topic>Cyclohexanols - metabolism</topic><topic>Ecological effects</topic><topic>Ecological genetics</topic><topic>ecosystems</topic><topic>Eucalyptol</topic><topic>Eucalyptus</topic><topic>Eucalyptus - chemistry</topic><topic>Eucalyptus - genetics</topic><topic>Eucalyptus - metabolism</topic><topic>Eucalyptus globulus</topic><topic>Exons</topic><topic>flavonoids</topic><topic>forest trees</topic><topic>Gene Frequency</topic><topic>Genes</topic><topic>Genes, Plant</topic><topic>genetic association</topic><topic>Genetic diversity</topic><topic>Genetic loci</topic><topic>Genetic Markers</topic><topic>Genetic variance</topic><topic>Genetic variation</topic><topic>Genotype</topic><topic>Herbivores</topic><topic>Introns</topic><topic>Linkage Disequilibrium</topic><topic>Metabolites</topic><topic>Metabolome</topic><topic>Monoterpenes - metabolism</topic><topic>Nucleotides</topic><topic>phenotype</topic><topic>Phenotypes</topic><topic>Phenotypic traits</topic><topic>Phenotypic variation</topic><topic>Phenotypic variations</topic><topic>Phosphates</topic><topic>Plant Leaves - chemistry</topic><topic>Plant Leaves - metabolism</topic><topic>plant secondary metabolites</topic><topic>plant–herbivore interaction</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Quantitative Trait Loci</topic><topic>Secondary metabolites</topic><topic>Sesquiterpenes</topic><topic>Single-nucleotide polymorphism</topic><topic>Species Specificity</topic><topic>Terpenes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Külheim, Carsten</creatorcontrib><creatorcontrib>Yeoh, Suat Hui</creatorcontrib><creatorcontrib>Wallis, Ian R.</creatorcontrib><creatorcontrib>Laffan, Shawn</creatorcontrib><creatorcontrib>Moran, Gavin F.</creatorcontrib><creatorcontrib>Foley, William J.</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The New phytologist</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Külheim, Carsten</au><au>Yeoh, Suat Hui</au><au>Wallis, Ian R.</au><au>Laffan, Shawn</au><au>Moran, Gavin F.</au><au>Foley, William J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>molecular basis of quantitative variation in foliar secondary metabolites in Eucalyptus globulus</atitle><jtitle>The New phytologist</jtitle><addtitle>New Phytol</addtitle><date>2011-09</date><risdate>2011</risdate><volume>191</volume><issue>4</issue><spage>1041</spage><epage>1053</epage><pages>1041-1053</pages><issn>0028-646X</issn><eissn>1469-8137</eissn><abstract>• Eucalyptus is characterized by high foliar concentrations of plant secondary metabolites with marked qualitative and quantitative variation within a single species. Secondary metabolites in eucalypts are important mediators of a diverse community of herbivores. • We used a candidate gene approach to investigate genetic associations between 195 single nucleotide polymorphisms (SNPs) from 24 candidate genes and 33 traits related to secondary metabolites in the Tasmanian Blue Gum (Eucalyptus globulus). • We discovered 37 significant associations (false discovery rate (FDR) Q < 0.05) across 11 candidate genes and 19 traits. The effects of SNPs on phenotypic variation were within the expected range (0.018 < r² < 0.061) for forest trees. Whereas most marker effects were nonadditive, two alleles from two consecutive genes in the methylerythritol phosphate pathway (MEP) showed additive effects. • This study successfully links allelic variants to ecologically important phenotypes which can have a large impact on the entire community. It is one of very few studies to identify the genetic variants of a foundation tree that influences ecosystem function.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>21609332</pmid><doi>10.1111/j.1469-8137.2011.03769.x</doi><tpages>13</tpages></addata></record> |
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| ispartof | The New phytologist, 2011-09, Vol.191 (4), p.1041-1053 |
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| source | MEDLINE; Wiley Journals; JSTOR Archive Collection A-Z Listing; IngentaConnect Free/Open Access Journals; EZB-FREE-00999 freely available EZB journals; Wiley Online Library (Open Access Collection) |
| subjects | additive effect Additives Alkyl and Aryl Transferases - metabolism Alleles Cyclohexanols - metabolism Ecological effects Ecological genetics ecosystems Eucalyptol Eucalyptus Eucalyptus - chemistry Eucalyptus - genetics Eucalyptus - metabolism Eucalyptus globulus Exons flavonoids forest trees Gene Frequency Genes Genes, Plant genetic association Genetic diversity Genetic loci Genetic Markers Genetic variance Genetic variation Genotype Herbivores Introns Linkage Disequilibrium Metabolites Metabolome Monoterpenes - metabolism Nucleotides phenotype Phenotypes Phenotypic traits Phenotypic variation Phenotypic variations Phosphates Plant Leaves - chemistry Plant Leaves - metabolism plant secondary metabolites plant–herbivore interaction Polymorphism, Single Nucleotide Quantitative Trait Loci Secondary metabolites Sesquiterpenes Single-nucleotide polymorphism Species Specificity Terpenes |
| title | molecular basis of quantitative variation in foliar secondary metabolites in Eucalyptus globulus |
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