Effects of grazing by sheep on the structure of methane-oxidizing bacterial community of steppe soil
Soils of three sites were studied in the Inner Mongolia steppe; one site non-grazed for 26 yr (NG26), another site non-grazed for 6 yr (NG6) and a third site freely grazed all along (FG). The composition of methantrophic communities was characterized by pmoA gene fragments (coding for a subunit of p...
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| Veröffentlicht in: | Soil biology & biochemistry 2008, Vol.40 (1), p.258-261 |
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| creator | Zhou, Xiao-Qi Wang, Yan-Fen Huang, Xiang-Zhong Hao, Yan-Bin Tian, Jian-Qing Wang, Jin-Zhi |
| description | Soils of three sites were studied in the Inner Mongolia steppe; one site non-grazed for 26
yr (NG26), another site non-grazed for 6
yr (NG6) and a third site freely grazed all along (FG). The composition of methantrophic communities was characterized by
pmoA gene fragments (coding for a subunit of particulate methane monooxygenase) that were PCR amplified from total soil DNA extracts, using denaturing gradient gel electrophoresis (DGGE) method. Cluster analysis based on the DGGE band patterns indicated that the methanotrophic communities structure of NG6 and FG soils were similar to each other but different from that of NG26 soil. Sequence analysis showed that most bands belonged to the cluster of USC
γ. This is the first report that USC
γ cluster is dominated in the grassland soil. |
| doi_str_mv | 10.1016/j.soilbio.2007.05.020 |
| format | Article |
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yr (NG26), another site non-grazed for 6
yr (NG6) and a third site freely grazed all along (FG). The composition of methantrophic communities was characterized by
pmoA gene fragments (coding for a subunit of particulate methane monooxygenase) that were PCR amplified from total soil DNA extracts, using denaturing gradient gel electrophoresis (DGGE) method. Cluster analysis based on the DGGE band patterns indicated that the methanotrophic communities structure of NG6 and FG soils were similar to each other but different from that of NG26 soil. Sequence analysis showed that most bands belonged to the cluster of USC
γ. This is the first report that USC
γ cluster is dominated in the grassland soil.</description><identifier>ISSN: 0038-0717</identifier><identifier>EISSN: 1879-3428</identifier><identifier>DOI: 10.1016/j.soilbio.2007.05.020</identifier><identifier>CODEN: SBIOAH</identifier><language>eng</language><publisher>Oxford: Elsevier Ltd</publisher><subject>Agronomy. Soil science and plant productions ; Bacteria ; Biochemistry and biology ; Biological and medical sciences ; Chemical, physicochemical, biochemical and biological properties ; community structure ; DGGE ; DNA primers ; Fundamental and applied biological sciences. Psychology ; gel electrophoresis ; Grassland ; grassland soils ; Grazing ; Inner Mongolia ; Methanotroph ; methanotrophs ; phylogeny ; Physics, chemistry, biochemistry and biology of agricultural and forest soils ; pmoA ; sequence analysis ; sheep ; soil bacteria ; Soil science ; steppe soils</subject><ispartof>Soil biology & biochemistry, 2008, Vol.40 (1), p.258-261</ispartof><rights>2007</rights><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c395t-5b0edafa83ec7261c8dfd12df4b8aded3370799c6ad49710fe264d2d19a78453</citedby><cites>FETCH-LOGICAL-c395t-5b0edafa83ec7261c8dfd12df4b8aded3370799c6ad49710fe264d2d19a78453</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S003807170700226X$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,4010,27900,27901,27902,65306</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=19198796$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhou, Xiao-Qi</creatorcontrib><creatorcontrib>Wang, Yan-Fen</creatorcontrib><creatorcontrib>Huang, Xiang-Zhong</creatorcontrib><creatorcontrib>Hao, Yan-Bin</creatorcontrib><creatorcontrib>Tian, Jian-Qing</creatorcontrib><creatorcontrib>Wang, Jin-Zhi</creatorcontrib><title>Effects of grazing by sheep on the structure of methane-oxidizing bacterial community of steppe soil</title><title>Soil biology & biochemistry</title><description>Soils of three sites were studied in the Inner Mongolia steppe; one site non-grazed for 26
yr (NG26), another site non-grazed for 6
yr (NG6) and a third site freely grazed all along (FG). The composition of methantrophic communities was characterized by
pmoA gene fragments (coding for a subunit of particulate methane monooxygenase) that were PCR amplified from total soil DNA extracts, using denaturing gradient gel electrophoresis (DGGE) method. Cluster analysis based on the DGGE band patterns indicated that the methanotrophic communities structure of NG6 and FG soils were similar to each other but different from that of NG26 soil. Sequence analysis showed that most bands belonged to the cluster of USC
γ. This is the first report that USC
γ cluster is dominated in the grassland soil.</description><subject>Agronomy. Soil science and plant productions</subject><subject>Bacteria</subject><subject>Biochemistry and biology</subject><subject>Biological and medical sciences</subject><subject>Chemical, physicochemical, biochemical and biological properties</subject><subject>community structure</subject><subject>DGGE</subject><subject>DNA primers</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>gel electrophoresis</subject><subject>Grassland</subject><subject>grassland soils</subject><subject>Grazing</subject><subject>Inner Mongolia</subject><subject>Methanotroph</subject><subject>methanotrophs</subject><subject>phylogeny</subject><subject>Physics, chemistry, biochemistry and biology of agricultural and forest soils</subject><subject>pmoA</subject><subject>sequence analysis</subject><subject>sheep</subject><subject>soil bacteria</subject><subject>Soil science</subject><subject>steppe soils</subject><issn>0038-0717</issn><issn>1879-3428</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNqFkT2P1DAQhi0EEsvBT0CkQVTJje0kdiqETseHdNIVHLXltce7XiVxsB3E8uvxKitRUrl53pl3HhPylkJDgfa3pyYFP-59aBiAaKBrgMEzsqNSDDVvmXxOdgBc1iCoeElepXQCANZRviP23jk0OVXBVYeo__j5UO3PVToiLlWYq3zEKuW4mrxGvEAT5qOesQ6_vfUbrk3G6PVYmTBN6-zz-QKmjMtSwqXaa_LC6THhm-t7Q54-3z_dfa0fHr98u_v0UBs-dLnu9oBWOy05GsF6aqR1ljLr2r3UFi3nAsQwmF7bdhAUHLK-tczSQQvZdvyGfNjGLjH8XDFlNflkcBxL37AmJSUHNpTTC9ltpIkhpYhOLdFPOp4VBXVxqk7q6lRdnCroVHFacu-vG3QyenRRz8anf-GBDsV5X7h3G-d0UPoQC_PjOwPKASTvWdsW4uNGYPHxy2NUyXicDVofy38oG_x_uvwFIiSatg</recordid><startdate>2008</startdate><enddate>2008</enddate><creator>Zhou, Xiao-Qi</creator><creator>Wang, Yan-Fen</creator><creator>Huang, Xiang-Zhong</creator><creator>Hao, Yan-Bin</creator><creator>Tian, Jian-Qing</creator><creator>Wang, Jin-Zhi</creator><general>Elsevier Ltd</general><general>Elsevier Science</general><scope>FBQ</scope><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7SN</scope><scope>7T7</scope><scope>7UA</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>P64</scope></search><sort><creationdate>2008</creationdate><title>Effects of grazing by sheep on the structure of methane-oxidizing bacterial community of steppe soil</title><author>Zhou, Xiao-Qi ; Wang, Yan-Fen ; Huang, Xiang-Zhong ; Hao, Yan-Bin ; Tian, Jian-Qing ; Wang, Jin-Zhi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c395t-5b0edafa83ec7261c8dfd12df4b8aded3370799c6ad49710fe264d2d19a78453</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Agronomy. Soil science and plant productions</topic><topic>Bacteria</topic><topic>Biochemistry and biology</topic><topic>Biological and medical sciences</topic><topic>Chemical, physicochemical, biochemical and biological properties</topic><topic>community structure</topic><topic>DGGE</topic><topic>DNA primers</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>gel electrophoresis</topic><topic>Grassland</topic><topic>grassland soils</topic><topic>Grazing</topic><topic>Inner Mongolia</topic><topic>Methanotroph</topic><topic>methanotrophs</topic><topic>phylogeny</topic><topic>Physics, chemistry, biochemistry and biology of agricultural and forest soils</topic><topic>pmoA</topic><topic>sequence analysis</topic><topic>sheep</topic><topic>soil bacteria</topic><topic>Soil science</topic><topic>steppe soils</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhou, Xiao-Qi</creatorcontrib><creatorcontrib>Wang, Yan-Fen</creatorcontrib><creatorcontrib>Huang, Xiang-Zhong</creatorcontrib><creatorcontrib>Hao, Yan-Bin</creatorcontrib><creatorcontrib>Tian, Jian-Qing</creatorcontrib><creatorcontrib>Wang, Jin-Zhi</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Water Resources Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Soil biology & biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhou, Xiao-Qi</au><au>Wang, Yan-Fen</au><au>Huang, Xiang-Zhong</au><au>Hao, Yan-Bin</au><au>Tian, Jian-Qing</au><au>Wang, Jin-Zhi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Effects of grazing by sheep on the structure of methane-oxidizing bacterial community of steppe soil</atitle><jtitle>Soil biology & biochemistry</jtitle><date>2008</date><risdate>2008</risdate><volume>40</volume><issue>1</issue><spage>258</spage><epage>261</epage><pages>258-261</pages><issn>0038-0717</issn><eissn>1879-3428</eissn><coden>SBIOAH</coden><abstract>Soils of three sites were studied in the Inner Mongolia steppe; one site non-grazed for 26
yr (NG26), another site non-grazed for 6
yr (NG6) and a third site freely grazed all along (FG). The composition of methantrophic communities was characterized by
pmoA gene fragments (coding for a subunit of particulate methane monooxygenase) that were PCR amplified from total soil DNA extracts, using denaturing gradient gel electrophoresis (DGGE) method. Cluster analysis based on the DGGE band patterns indicated that the methanotrophic communities structure of NG6 and FG soils were similar to each other but different from that of NG26 soil. Sequence analysis showed that most bands belonged to the cluster of USC
γ. This is the first report that USC
γ cluster is dominated in the grassland soil.</abstract><cop>Oxford</cop><cop>New York, NY</cop><pub>Elsevier Ltd</pub><doi>10.1016/j.soilbio.2007.05.020</doi><tpages>4</tpages></addata></record> |
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| subjects | Agronomy. Soil science and plant productions Bacteria Biochemistry and biology Biological and medical sciences Chemical, physicochemical, biochemical and biological properties community structure DGGE DNA primers Fundamental and applied biological sciences. Psychology gel electrophoresis Grassland grassland soils Grazing Inner Mongolia Methanotroph methanotrophs phylogeny Physics, chemistry, biochemistry and biology of agricultural and forest soils pmoA sequence analysis sheep soil bacteria Soil science steppe soils |
| title | Effects of grazing by sheep on the structure of methane-oxidizing bacterial community of steppe soil |
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