ODORactor: a web server for deciphering olfactory coding
ODORactor is an open access web server aimed at providing a platform for identifying odorant receptors (ORs) for small molecules and for browsing existing OR-ligand pairs. It enables the prediction of ORs from the molecular structures of arbitrary chemicals by integrating two individual functionalit...
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| Veröffentlicht in: | Bioinformatics 2011-08, Vol.27 (16), p.2302-2303 |
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| container_title | Bioinformatics |
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| creator | Liu, Xinyi Su, Xubo Wang, Fei Huang, Zhimin Wang, Qi Li, Zhen Zhang, Ruina Wu, Lifang Pan, Yi Chen, Yingyi Zhuang, Hanyi Chen, Guoqiang Shi, Ting Zhang, Jian |
| description | ODORactor is an open access web server aimed at providing a platform for identifying odorant receptors (ORs) for small molecules and for browsing existing OR-ligand pairs. It enables the prediction of ORs from the molecular structures of arbitrary chemicals by integrating two individual functionalities: odorant verification and OR recognition. The prediction of the ORs for several odorants was experimentally validated in the study. In addition, ODORactor features a comprehensive repertoire of olfactory information that has been manually curated from literature. Therefore, ODORactor may provide an effective way to decipher olfactory coding and could be a useful server tool for both basic olfaction research in academia and for odorant discovery in industry.
Availability: Freely available at http://mdl.shsmu.edu.cn/ODORactor
Contact:
jian.zhang@sjtu.edu.cn
Supplementary information:
Supplementary data are available at Bioinformatics online. |
| doi_str_mv | 10.1093/bioinformatics/btr385 |
| format | Article |
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Availability: Freely available at http://mdl.shsmu.edu.cn/ODORactor
Contact:
jian.zhang@sjtu.edu.cn
Supplementary information:
Supplementary data are available at Bioinformatics online.</description><identifier>ISSN: 1367-4803</identifier><identifier>EISSN: 1460-2059</identifier><identifier>EISSN: 1367-4811</identifier><identifier>DOI: 10.1093/bioinformatics/btr385</identifier><identifier>PMID: 21700676</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Animals ; Biological and medical sciences ; Fundamental and applied biological sciences. Psychology ; General aspects ; Humans ; Internet ; Ligands ; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) ; Mice ; Odorants ; Receptors, Odorant - chemistry ; Smell ; Software</subject><ispartof>Bioinformatics, 2011-08, Vol.27 (16), p.2302-2303</ispartof><rights>The Author 2011. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2011</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c426t-f3dcb8aeb2ea8f7c6785966699910147b95a36bca3110064ea1d05624171e73f3</citedby><cites>FETCH-LOGICAL-c426t-f3dcb8aeb2ea8f7c6785966699910147b95a36bca3110064ea1d05624171e73f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,1604,27924,27925</link.rule.ids><linktorsrc>$$Uhttps://dx.doi.org/10.1093/bioinformatics/btr385$$EView_record_in_Oxford_University_Press$$FView_record_in_$$GOxford_University_Press</linktorsrc><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24411763$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21700676$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Xinyi</creatorcontrib><creatorcontrib>Su, Xubo</creatorcontrib><creatorcontrib>Wang, Fei</creatorcontrib><creatorcontrib>Huang, Zhimin</creatorcontrib><creatorcontrib>Wang, Qi</creatorcontrib><creatorcontrib>Li, Zhen</creatorcontrib><creatorcontrib>Zhang, Ruina</creatorcontrib><creatorcontrib>Wu, Lifang</creatorcontrib><creatorcontrib>Pan, Yi</creatorcontrib><creatorcontrib>Chen, Yingyi</creatorcontrib><creatorcontrib>Zhuang, Hanyi</creatorcontrib><creatorcontrib>Chen, Guoqiang</creatorcontrib><creatorcontrib>Shi, Ting</creatorcontrib><creatorcontrib>Zhang, Jian</creatorcontrib><title>ODORactor: a web server for deciphering olfactory coding</title><title>Bioinformatics</title><addtitle>Bioinformatics</addtitle><description>ODORactor is an open access web server aimed at providing a platform for identifying odorant receptors (ORs) for small molecules and for browsing existing OR-ligand pairs. It enables the prediction of ORs from the molecular structures of arbitrary chemicals by integrating two individual functionalities: odorant verification and OR recognition. The prediction of the ORs for several odorants was experimentally validated in the study. In addition, ODORactor features a comprehensive repertoire of olfactory information that has been manually curated from literature. Therefore, ODORactor may provide an effective way to decipher olfactory coding and could be a useful server tool for both basic olfaction research in academia and for odorant discovery in industry.
Availability: Freely available at http://mdl.shsmu.edu.cn/ODORactor
Contact:
jian.zhang@sjtu.edu.cn
Supplementary information:
Supplementary data are available at Bioinformatics online.</description><subject>Animals</subject><subject>Biological and medical sciences</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General aspects</subject><subject>Humans</subject><subject>Internet</subject><subject>Ligands</subject><subject>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</subject><subject>Mice</subject><subject>Odorants</subject><subject>Receptors, Odorant - chemistry</subject><subject>Smell</subject><subject>Software</subject><issn>1367-4803</issn><issn>1460-2059</issn><issn>1367-4811</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqN0MtKxDAUBuAgijNeHkHpRlzVyWnSJHUn4xUGBkTXJU0TjbTNmLTKvL3Rjoo7VwnhO_8JP0JHgM8AF2RWWWc743wre6vCrOo9EfkWmgJlOM1wXmzHO2E8pQKTCdoL4QXjHCilu2iSAceYcTZFYnm5vJeqd_48kcm7rpKg_Zv2SYxOaq3s6ll72z0lrjFfbJ0oV8eHA7RjZBP04ebcR4_XVw_z23SxvLmbXyxSRTPWp4bUqhJSV5mWwnDFuMgLxlhRFICB8qrIJWGVkgQgfolqCTXOWUaBg-bEkH10OuauvHsddOjL1galm0Z22g2hFCKmEA4QZT5K5V0IXpty5W0r_boEXH52Vv7trBw7i3PHmw1D1er6Z-q7pAhONkAGJRvjZads-HWUAkQWHR6dG1b_3P0BJRiKNw</recordid><startdate>20110815</startdate><enddate>20110815</enddate><creator>Liu, Xinyi</creator><creator>Su, Xubo</creator><creator>Wang, Fei</creator><creator>Huang, Zhimin</creator><creator>Wang, Qi</creator><creator>Li, Zhen</creator><creator>Zhang, Ruina</creator><creator>Wu, Lifang</creator><creator>Pan, Yi</creator><creator>Chen, Yingyi</creator><creator>Zhuang, Hanyi</creator><creator>Chen, Guoqiang</creator><creator>Shi, Ting</creator><creator>Zhang, Jian</creator><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20110815</creationdate><title>ODORactor: a web server for deciphering olfactory coding</title><author>Liu, Xinyi ; Su, Xubo ; Wang, Fei ; Huang, Zhimin ; Wang, Qi ; Li, Zhen ; Zhang, Ruina ; Wu, Lifang ; Pan, Yi ; Chen, Yingyi ; Zhuang, Hanyi ; Chen, Guoqiang ; Shi, Ting ; Zhang, Jian</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c426t-f3dcb8aeb2ea8f7c6785966699910147b95a36bca3110064ea1d05624171e73f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Animals</topic><topic>Biological and medical sciences</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General aspects</topic><topic>Humans</topic><topic>Internet</topic><topic>Ligands</topic><topic>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</topic><topic>Mice</topic><topic>Odorants</topic><topic>Receptors, Odorant - chemistry</topic><topic>Smell</topic><topic>Software</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Xinyi</creatorcontrib><creatorcontrib>Su, Xubo</creatorcontrib><creatorcontrib>Wang, Fei</creatorcontrib><creatorcontrib>Huang, Zhimin</creatorcontrib><creatorcontrib>Wang, Qi</creatorcontrib><creatorcontrib>Li, Zhen</creatorcontrib><creatorcontrib>Zhang, Ruina</creatorcontrib><creatorcontrib>Wu, Lifang</creatorcontrib><creatorcontrib>Pan, Yi</creatorcontrib><creatorcontrib>Chen, Yingyi</creatorcontrib><creatorcontrib>Zhuang, Hanyi</creatorcontrib><creatorcontrib>Chen, Guoqiang</creatorcontrib><creatorcontrib>Shi, Ting</creatorcontrib><creatorcontrib>Zhang, Jian</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Liu, Xinyi</au><au>Su, Xubo</au><au>Wang, Fei</au><au>Huang, Zhimin</au><au>Wang, Qi</au><au>Li, Zhen</au><au>Zhang, Ruina</au><au>Wu, Lifang</au><au>Pan, Yi</au><au>Chen, Yingyi</au><au>Zhuang, Hanyi</au><au>Chen, Guoqiang</au><au>Shi, Ting</au><au>Zhang, Jian</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>ODORactor: a web server for deciphering olfactory coding</atitle><jtitle>Bioinformatics</jtitle><addtitle>Bioinformatics</addtitle><date>2011-08-15</date><risdate>2011</risdate><volume>27</volume><issue>16</issue><spage>2302</spage><epage>2303</epage><pages>2302-2303</pages><issn>1367-4803</issn><eissn>1460-2059</eissn><eissn>1367-4811</eissn><abstract>ODORactor is an open access web server aimed at providing a platform for identifying odorant receptors (ORs) for small molecules and for browsing existing OR-ligand pairs. It enables the prediction of ORs from the molecular structures of arbitrary chemicals by integrating two individual functionalities: odorant verification and OR recognition. The prediction of the ORs for several odorants was experimentally validated in the study. In addition, ODORactor features a comprehensive repertoire of olfactory information that has been manually curated from literature. Therefore, ODORactor may provide an effective way to decipher olfactory coding and could be a useful server tool for both basic olfaction research in academia and for odorant discovery in industry.
Availability: Freely available at http://mdl.shsmu.edu.cn/ODORactor
Contact:
jian.zhang@sjtu.edu.cn
Supplementary information:
Supplementary data are available at Bioinformatics online.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>21700676</pmid><doi>10.1093/bioinformatics/btr385</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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| source | Oxford Journals Open Access Collection |
| subjects | Animals Biological and medical sciences Fundamental and applied biological sciences. Psychology General aspects Humans Internet Ligands Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Mice Odorants Receptors, Odorant - chemistry Smell Software |
| title | ODORactor: a web server for deciphering olfactory coding |
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