Identification and characterization of putative CIPK genes in maize
Calcium (Ca) plays a crucial role as a second messenger in intracellular signaling elicited by developmental and environmental cues. Calcineurin B-like proteins (CBLs) and their target proteins, CBL-interacting protein kinases (CIPKs) have emerged as a key Ca 2+-mediated signaling network in respons...
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| Veröffentlicht in: | Journal of genetics and genomics 2011-02, Vol.38 (2), p.77-87 |
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| creator | Chen, Xifeng Gu, Zhimin Xin, Dedong Hao, Liang Liu, Chengjie Huang, Ji Ma, Bojun Zhang, Hongsheng |
| description | Calcium (Ca) plays a crucial role as a second messenger in intracellular signaling elicited by developmental and environmental cues. Calcineurin B-like proteins (CBLs) and their target proteins, CBL-interacting protein kinases (CIPKs) have emerged as a key Ca
2+-mediated signaling network in response to stresses in plants. Bioinformatic analysis was used to identify 43 putative
ZmCIPK (
Zea mays CIPK) genes in the genome of maize inbred line B73. Based on gene structures, these
ZmCIPKs were divided into intron-rich and intron-poor groups. Phylogenetic analysis indicated that the
ZmCIPK family had a high evolutionary relationship with the rice
CIPK family of 30 members. Microarray data and RT-PCR assay showed that
ZmCIPK genes transcriptionally responded to abiotic stresses, and that 24, 31, 20 and 19
ZmCIPK genes were up-regulated by salt, drought, heat and cold stresses, respectively. There were different expression patterns of
ZmCIPKs between cold-tolerant inbred line B73 and cold-sensitive inbred line Mo17 under cold stress. Our findings will aid further molecular dissection of biological functions of the CIPKs in maize, and provide new insight into the CBL–CIPK signaling network in plants. |
| doi_str_mv | 10.1016/j.jcg.2011.01.005 |
| format | Article |
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2+-mediated signaling network in response to stresses in plants. Bioinformatic analysis was used to identify 43 putative
ZmCIPK (
Zea mays CIPK) genes in the genome of maize inbred line B73. Based on gene structures, these
ZmCIPKs were divided into intron-rich and intron-poor groups. Phylogenetic analysis indicated that the
ZmCIPK family had a high evolutionary relationship with the rice
CIPK family of 30 members. Microarray data and RT-PCR assay showed that
ZmCIPK genes transcriptionally responded to abiotic stresses, and that 24, 31, 20 and 19
ZmCIPK genes were up-regulated by salt, drought, heat and cold stresses, respectively. There were different expression patterns of
ZmCIPKs between cold-tolerant inbred line B73 and cold-sensitive inbred line Mo17 under cold stress. Our findings will aid further molecular dissection of biological functions of the CIPKs in maize, and provide new insight into the CBL–CIPK signaling network in plants.</description><identifier>ISSN: 1673-8527</identifier><identifier>DOI: 10.1016/j.jcg.2011.01.005</identifier><identifier>PMID: 21356527</identifier><language>eng</language><publisher>China: Elsevier Ltd</publisher><subject>Abiotic stresses ; Arabidopsis - genetics ; Calcineurin - genetics ; Calcium - metabolism ; Calcium-Binding Proteins - genetics ; Calcium-Binding Proteins - metabolism ; CIPK family ; Computational Biology ; Evolution ; Evolution, Molecular ; Expression ; Gene Expression Profiling ; Maize ; Oryza - genetics ; Oryza sativa ; Phylogeny ; Protein-Serine-Threonine Kinases - genetics ; Sequence Homology, Amino Acid ; Signal Transduction ; Stress, Physiological ; Zea mays ; Zea mays - genetics</subject><ispartof>Journal of genetics and genomics, 2011-02, Vol.38 (2), p.77-87</ispartof><rights>2011</rights><rights>Copyright © 2011. Published by Elsevier Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c384t-f9efae4301453a868aed203746024d54aeffc6f62e72089088a452bb8849f34e3</citedby><cites>FETCH-LOGICAL-c384t-f9efae4301453a868aed203746024d54aeffc6f62e72089088a452bb8849f34e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1673852711000063$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21356527$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chen, Xifeng</creatorcontrib><creatorcontrib>Gu, Zhimin</creatorcontrib><creatorcontrib>Xin, Dedong</creatorcontrib><creatorcontrib>Hao, Liang</creatorcontrib><creatorcontrib>Liu, Chengjie</creatorcontrib><creatorcontrib>Huang, Ji</creatorcontrib><creatorcontrib>Ma, Bojun</creatorcontrib><creatorcontrib>Zhang, Hongsheng</creatorcontrib><title>Identification and characterization of putative CIPK genes in maize</title><title>Journal of genetics and genomics</title><addtitle>J Genet Genomics</addtitle><description>Calcium (Ca) plays a crucial role as a second messenger in intracellular signaling elicited by developmental and environmental cues. Calcineurin B-like proteins (CBLs) and their target proteins, CBL-interacting protein kinases (CIPKs) have emerged as a key Ca
2+-mediated signaling network in response to stresses in plants. Bioinformatic analysis was used to identify 43 putative
ZmCIPK (
Zea mays CIPK) genes in the genome of maize inbred line B73. Based on gene structures, these
ZmCIPKs were divided into intron-rich and intron-poor groups. Phylogenetic analysis indicated that the
ZmCIPK family had a high evolutionary relationship with the rice
CIPK family of 30 members. Microarray data and RT-PCR assay showed that
ZmCIPK genes transcriptionally responded to abiotic stresses, and that 24, 31, 20 and 19
ZmCIPK genes were up-regulated by salt, drought, heat and cold stresses, respectively. There were different expression patterns of
ZmCIPKs between cold-tolerant inbred line B73 and cold-sensitive inbred line Mo17 under cold stress. Our findings will aid further molecular dissection of biological functions of the CIPKs in maize, and provide new insight into the CBL–CIPK signaling network in plants.</description><subject>Abiotic stresses</subject><subject>Arabidopsis - genetics</subject><subject>Calcineurin - genetics</subject><subject>Calcium - metabolism</subject><subject>Calcium-Binding Proteins - genetics</subject><subject>Calcium-Binding Proteins - metabolism</subject><subject>CIPK family</subject><subject>Computational Biology</subject><subject>Evolution</subject><subject>Evolution, Molecular</subject><subject>Expression</subject><subject>Gene Expression Profiling</subject><subject>Maize</subject><subject>Oryza - genetics</subject><subject>Oryza sativa</subject><subject>Phylogeny</subject><subject>Protein-Serine-Threonine Kinases - genetics</subject><subject>Sequence Homology, Amino Acid</subject><subject>Signal Transduction</subject><subject>Stress, Physiological</subject><subject>Zea mays</subject><subject>Zea mays - genetics</subject><issn>1673-8527</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkD1PwzAQhj2AaCn8ABaUjanBn4kjJhTxUVEJBpgt1zkXR01S7ASJ_npcpTCCdNKdXj33Dg9CFwSnBJPsuk5rs04pJiTFcbA4QlOS5WwuBc0n6DSEOoayIOIETShhIov5FJWLCtreWWd077o20W2VmHfttenBu90YdjbZDn28PyEpFy9PyRpaCIlrk0a7HZyhY6s3Ac4Pe4be7u9ey8f58vlhUd4u54ZJ3s9tAVYDZ5hwwbTMpIaKYpbzDFNeCa7BWpPZjEJOsSywlJoLulpJyQvLOLAZuhp7t777GCD0qnHBwGajW-iGoGRe8JzQIvufFFxEN5JHkoyk8V0IHqzaetdo_6UIVnuxqlZRrNqLVTgOFvHn8tA-rBqofj9-rEbgZgQg2vh04FUwDloDlfNgelV17o_6b6twiW0</recordid><startdate>20110201</startdate><enddate>20110201</enddate><creator>Chen, Xifeng</creator><creator>Gu, Zhimin</creator><creator>Xin, Dedong</creator><creator>Hao, Liang</creator><creator>Liu, Chengjie</creator><creator>Huang, Ji</creator><creator>Ma, Bojun</creator><creator>Zhang, Hongsheng</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20110201</creationdate><title>Identification and characterization of putative CIPK genes in maize</title><author>Chen, Xifeng ; Gu, Zhimin ; Xin, Dedong ; Hao, Liang ; Liu, Chengjie ; Huang, Ji ; Ma, Bojun ; Zhang, Hongsheng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c384t-f9efae4301453a868aed203746024d54aeffc6f62e72089088a452bb8849f34e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Abiotic stresses</topic><topic>Arabidopsis - genetics</topic><topic>Calcineurin - genetics</topic><topic>Calcium - metabolism</topic><topic>Calcium-Binding Proteins - genetics</topic><topic>Calcium-Binding Proteins - metabolism</topic><topic>CIPK family</topic><topic>Computational Biology</topic><topic>Evolution</topic><topic>Evolution, Molecular</topic><topic>Expression</topic><topic>Gene Expression Profiling</topic><topic>Maize</topic><topic>Oryza - genetics</topic><topic>Oryza sativa</topic><topic>Phylogeny</topic><topic>Protein-Serine-Threonine Kinases - genetics</topic><topic>Sequence Homology, Amino Acid</topic><topic>Signal Transduction</topic><topic>Stress, Physiological</topic><topic>Zea mays</topic><topic>Zea mays - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Xifeng</creatorcontrib><creatorcontrib>Gu, Zhimin</creatorcontrib><creatorcontrib>Xin, Dedong</creatorcontrib><creatorcontrib>Hao, Liang</creatorcontrib><creatorcontrib>Liu, Chengjie</creatorcontrib><creatorcontrib>Huang, Ji</creatorcontrib><creatorcontrib>Ma, Bojun</creatorcontrib><creatorcontrib>Zhang, Hongsheng</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of genetics and genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Xifeng</au><au>Gu, Zhimin</au><au>Xin, Dedong</au><au>Hao, Liang</au><au>Liu, Chengjie</au><au>Huang, Ji</au><au>Ma, Bojun</au><au>Zhang, Hongsheng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identification and characterization of putative CIPK genes in maize</atitle><jtitle>Journal of genetics and genomics</jtitle><addtitle>J Genet Genomics</addtitle><date>2011-02-01</date><risdate>2011</risdate><volume>38</volume><issue>2</issue><spage>77</spage><epage>87</epage><pages>77-87</pages><issn>1673-8527</issn><abstract>Calcium (Ca) plays a crucial role as a second messenger in intracellular signaling elicited by developmental and environmental cues. Calcineurin B-like proteins (CBLs) and their target proteins, CBL-interacting protein kinases (CIPKs) have emerged as a key Ca
2+-mediated signaling network in response to stresses in plants. Bioinformatic analysis was used to identify 43 putative
ZmCIPK (
Zea mays CIPK) genes in the genome of maize inbred line B73. Based on gene structures, these
ZmCIPKs were divided into intron-rich and intron-poor groups. Phylogenetic analysis indicated that the
ZmCIPK family had a high evolutionary relationship with the rice
CIPK family of 30 members. Microarray data and RT-PCR assay showed that
ZmCIPK genes transcriptionally responded to abiotic stresses, and that 24, 31, 20 and 19
ZmCIPK genes were up-regulated by salt, drought, heat and cold stresses, respectively. There were different expression patterns of
ZmCIPKs between cold-tolerant inbred line B73 and cold-sensitive inbred line Mo17 under cold stress. Our findings will aid further molecular dissection of biological functions of the CIPKs in maize, and provide new insight into the CBL–CIPK signaling network in plants.</abstract><cop>China</cop><pub>Elsevier Ltd</pub><pmid>21356527</pmid><doi>10.1016/j.jcg.2011.01.005</doi><tpages>11</tpages></addata></record> |
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| subjects | Abiotic stresses Arabidopsis - genetics Calcineurin - genetics Calcium - metabolism Calcium-Binding Proteins - genetics Calcium-Binding Proteins - metabolism CIPK family Computational Biology Evolution Evolution, Molecular Expression Gene Expression Profiling Maize Oryza - genetics Oryza sativa Phylogeny Protein-Serine-Threonine Kinases - genetics Sequence Homology, Amino Acid Signal Transduction Stress, Physiological Zea mays Zea mays - genetics |
| title | Identification and characterization of putative CIPK genes in maize |
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