Complete nucleotide sequence of the temperate bacteriophage LBR48, a new member of the family Myoviridae
The complete genomic sequence of LBR48, a temperate bacteriophage induced from a lysogenic strain of Lactobacillus brevis, was found to be 48,211 nucleotides long and to contain 90 putative open reading frames. Based on structural characteristics obtained from microscopic analysis and nucleic acid s...
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| Veröffentlicht in: | Archives of virology 2011-02, Vol.156 (2), p.319-322 |
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| creator | Jang, Se Hwan Yoon, Bo Hyun Chang, Hyo Ihl |
| description | The complete genomic sequence of LBR48, a temperate bacteriophage induced from a lysogenic strain of Lactobacillus brevis, was found to be 48,211 nucleotides long and to contain 90 putative open reading frames. Based on structural characteristics obtained from microscopic analysis and nucleic acid sequence determination, phage LBR48 can be classified as a member of the family Myoviridae. Analysis of the genome showed the conserved gene order of previously reported phages of the family Siphoviridae from lactic acid bacteria, despite low nucleotide sequence similarity. Analysis of the attachment sites revealed 15-nucleotide-long core sequences. |
| doi_str_mv | 10.1007/s00705-010-0841-7 |
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Based on structural characteristics obtained from microscopic analysis and nucleic acid sequence determination, phage LBR48 can be classified as a member of the family Myoviridae. Analysis of the genome showed the conserved gene order of previously reported phages of the family Siphoviridae from lactic acid bacteria, despite low nucleotide sequence similarity. Analysis of the attachment sites revealed 15-nucleotide-long core sequences.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-010-0841-7</identifier><identifier>PMID: 20976608</identifier><language>eng</language><publisher>Vienna: Vienna : Springer Vienna</publisher><subject>Attachment Sites, Microbiological - genetics ; Bacteria ; Base Sequence ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Brief Report ; Cloning ; DNA, Viral - genetics ; Fermentation ; Food Microbiology ; Fundamental and applied biological sciences. Psychology ; Genetic testing ; Genome, Viral ; Genomes ; Infectious Diseases ; Lactobacillus brevis ; Lactobacillus brevis - genetics ; Lactobacillus brevis - virology ; Medical Microbiology ; Microbiology ; Microscopy, Electron, Transmission ; Miscellaneous ; Molecular Sequence Data ; Myoviridae ; Myoviridae - classification ; Myoviridae - genetics ; Myoviridae - isolation & purification ; Myoviridae - ultrastructure ; Open Reading Frames ; Proteins ; Sequence Homology, Nucleic Acid ; Siphoviridae ; Virology ; Virulence</subject><ispartof>Archives of virology, 2011-02, Vol.156 (2), p.319-322</ispartof><rights>Springer-Verlag 2010</rights><rights>2015 INIST-CNRS</rights><rights>Springer-Verlag 2011</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c456t-bb3b711721cc3a05b110f62e4125cce95e5074ff0c3d23d2dbda632e772683333</citedby><cites>FETCH-LOGICAL-c456t-bb3b711721cc3a05b110f62e4125cce95e5074ff0c3d23d2dbda632e772683333</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-010-0841-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-010-0841-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=23843957$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20976608$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jang, Se Hwan</creatorcontrib><creatorcontrib>Yoon, Bo Hyun</creatorcontrib><creatorcontrib>Chang, Hyo Ihl</creatorcontrib><title>Complete nucleotide sequence of the temperate bacteriophage LBR48, a new member of the family Myoviridae</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>The complete genomic sequence of LBR48, a temperate bacteriophage induced from a lysogenic strain of Lactobacillus brevis, was found to be 48,211 nucleotides long and to contain 90 putative open reading frames. Based on structural characteristics obtained from microscopic analysis and nucleic acid sequence determination, phage LBR48 can be classified as a member of the family Myoviridae. Analysis of the genome showed the conserved gene order of previously reported phages of the family Siphoviridae from lactic acid bacteria, despite low nucleotide sequence similarity. Analysis of the attachment sites revealed 15-nucleotide-long core sequences.</description><subject>Attachment Sites, Microbiological - genetics</subject><subject>Bacteria</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brief Report</subject><subject>Cloning</subject><subject>DNA, Viral - genetics</subject><subject>Fermentation</subject><subject>Food Microbiology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetic testing</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Lactobacillus brevis</subject><subject>Lactobacillus brevis - genetics</subject><subject>Lactobacillus brevis - virology</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Microscopy, Electron, Transmission</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Myoviridae</subject><subject>Myoviridae - classification</subject><subject>Myoviridae - genetics</subject><subject>Myoviridae - isolation & purification</subject><subject>Myoviridae - ultrastructure</subject><subject>Open Reading Frames</subject><subject>Proteins</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Siphoviridae</subject><subject>Virology</subject><subject>Virulence</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkV2L1DAUhoMo7rj6A7zRIIg3Vk--mvRSB79gRFD3OqTp6UyXtqlJq8y_N0NnXfBCDCGBk-d9k5OXkMcMXjEA_TrlBVQBDAowkhX6DtkwKXhhdGXukg0IkIUpwVyQByldA-SCUPfJBYdKl7m-IYdtGKYeZ6Tj4nsMc9cgTfhjwdEjDS2dD0hnHCaMLkO18zPGLkwHt0e6e_tVmpfU0RF_0QGHGuONpHVD1x_p52P42cWucfiQ3Gtdn_DReb8kV-_ffd9-LHZfPnzavtkVXqpyLupa1JoxzZn3woGqGYO25CgZV95jpVCBlm0LXjQ8z6ZuXCk4as1LI_K4JC9W3ymG3EWa7dAlj33vRgxLsiZbc8Or_yBllX9Wa8jks7_I67DEMbeRIaNExUFmiK2QjyGliK2dYje4eLQM7Ckuu8Zls6k9xWV11jw5Gy_1gM0fxU0-GXh-Blzyrm-jG32XbjlhpKjUyYivXMpH4x7j7Qv_dfvTVdS6YN0-ZuOrbxyYAFYJo7Ltb8jetC8</recordid><startdate>20110201</startdate><enddate>20110201</enddate><creator>Jang, Se Hwan</creator><creator>Yoon, Bo Hyun</creator><creator>Chang, Hyo Ihl</creator><general>Vienna : Springer Vienna</general><general>Springer Vienna</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>7T7</scope><scope>C1K</scope></search><sort><creationdate>20110201</creationdate><title>Complete nucleotide sequence of the temperate bacteriophage LBR48, a new member of the family Myoviridae</title><author>Jang, Se Hwan ; Yoon, Bo Hyun ; Chang, Hyo Ihl</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c456t-bb3b711721cc3a05b110f62e4125cce95e5074ff0c3d23d2dbda632e772683333</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Attachment Sites, Microbiological - genetics</topic><topic>Bacteria</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Brief Report</topic><topic>Cloning</topic><topic>DNA, Viral - genetics</topic><topic>Fermentation</topic><topic>Food Microbiology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genetic testing</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Infectious Diseases</topic><topic>Lactobacillus brevis</topic><topic>Lactobacillus brevis - genetics</topic><topic>Lactobacillus brevis - virology</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Microscopy, Electron, Transmission</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Myoviridae</topic><topic>Myoviridae - classification</topic><topic>Myoviridae - genetics</topic><topic>Myoviridae - isolation & purification</topic><topic>Myoviridae - ultrastructure</topic><topic>Open Reading Frames</topic><topic>Proteins</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Siphoviridae</topic><topic>Virology</topic><topic>Virulence</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jang, Se Hwan</creatorcontrib><creatorcontrib>Yoon, Bo Hyun</creatorcontrib><creatorcontrib>Chang, Hyo Ihl</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jang, Se Hwan</au><au>Yoon, Bo Hyun</au><au>Chang, Hyo Ihl</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete nucleotide sequence of the temperate bacteriophage LBR48, a new member of the family Myoviridae</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2011-02-01</date><risdate>2011</risdate><volume>156</volume><issue>2</issue><spage>319</spage><epage>322</epage><pages>319-322</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>The complete genomic sequence of LBR48, a temperate bacteriophage induced from a lysogenic strain of Lactobacillus brevis, was found to be 48,211 nucleotides long and to contain 90 putative open reading frames. 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| ispartof | Archives of virology, 2011-02, Vol.156 (2), p.319-322 |
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| source | MEDLINE; SpringerNature Journals |
| subjects | Attachment Sites, Microbiological - genetics Bacteria Base Sequence Biological and medical sciences Biomedical and Life Sciences Biomedicine Brief Report Cloning DNA, Viral - genetics Fermentation Food Microbiology Fundamental and applied biological sciences. Psychology Genetic testing Genome, Viral Genomes Infectious Diseases Lactobacillus brevis Lactobacillus brevis - genetics Lactobacillus brevis - virology Medical Microbiology Microbiology Microscopy, Electron, Transmission Miscellaneous Molecular Sequence Data Myoviridae Myoviridae - classification Myoviridae - genetics Myoviridae - isolation & purification Myoviridae - ultrastructure Open Reading Frames Proteins Sequence Homology, Nucleic Acid Siphoviridae Virology Virulence |
| title | Complete nucleotide sequence of the temperate bacteriophage LBR48, a new member of the family Myoviridae |
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