Alcanivorax pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium
A taxonomic study was carried out on a novel bacterial strain, designated W11-5(T), which was isolated from a pyrene-degrading consortium enriched from deep-sea sediment of the Pacific Ocean. The isolate was Gram-reaction-negative and oxidase- and catalase-positive. Growth was observed in 0.5-12 % (...
Gespeichert in:
| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2011-06, Vol.61 (Pt 6), p.1370-1374 |
|---|---|
| Hauptverfasser: | , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 1374 |
|---|---|
| container_issue | Pt 6 |
| container_start_page | 1370 |
| container_title | International journal of systematic and evolutionary microbiology |
| container_volume | 61 |
| creator | Lai, Qiliang Wang, Liping Liu, Yuhui Fu, Yuanyuan Zhong, Huanzi Wang, Baojiang Chen, Liang Wang, Jianning Sun, Fengqin Shao, Zongze |
| description | A taxonomic study was carried out on a novel bacterial strain, designated W11-5(T), which was isolated from a pyrene-degrading consortium enriched from deep-sea sediment of the Pacific Ocean. The isolate was Gram-reaction-negative and oxidase- and catalase-positive. Growth was observed in 0.5-12 % (w/v) NaCl and at 10-42 °C. On the basis of 16S rRNA gene sequence analysis, strain W11-5(T) was shown to belong to the genus Alcanivorax with a close relation to A. dieselolei B-5(T) (93.9 % 16S rRNA sequence similarity), A. balearicus MACL04(T) (93.1 %), A. hongdengensis A-11-3(T) (93.1 %), A. borkumensis SK2(T) (93.0 %), A. venustensis ISO4(T) (93.0 %) and A. jadensis T9(T) (92.9 %). Similarities between the gyrB gene sequences of W11-5(T) and other species of the genus Alcanivorax were between 76.8 and 80.8 %. The principal fatty acids were C(12 : 0) 3-OH (8.0 %), C(16 : 0) (29.1 %) and C(18 : 1)ω7c (27.4 %). The G+C content of the chromosomal DNA was 60.8 mol%. Based on its morphology, physiology and fatty acid composition as well as the results of 16S rRNA and gyrB gene sequence analyses, strain W11-5(T) ( = MCCC 1A00474(T) = CCTCC AB 208236(T) = LMG 25514(T)) represents a novel species of the genus Alcanivorax, for which the name Alcanivorax pacificus sp. nov. is proposed. |
| doi_str_mv | 10.1099/ijs.0.022368-0 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_871003408</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>871003408</sourcerecordid><originalsourceid>FETCH-LOGICAL-c364t-14255c62205968a0bab687104a150a6b83abdd0a66a7632b2db27b545ae34bc93</originalsourceid><addsrcrecordid>eNpFkE1LxDAQhoMoun5cPUou4sXWSZpk2-MifsGCl_UcJmkqkbapyVbcf2-XXfU0L8MzL8NDyCWDnEFV3fmPlEMOnBeqzOCAzJhQKpNQiMO_zNUJOU3pA2BaAByTEw6yFCVTM7JatBZ7_xUiftMBrW-8HRNNQ0778JXfUp9Ci2tX0yaGjiKtnRuy5JAOm-h6l9XuPWLt-3dqQ59CXPuxOydHDbbJXeznGXl7fFjdP2fL16eX-8Uys4US64wJLqVVfPqmUiWCQaPKOQOBTAIqUxZo6npKCueq4IbXhs-NFBJdIYytijNys-sdYvgcXVrrzifr2hZ7F8akt2WTCSgnMt-RNoaUomv0EH2HcaMZ6K1IPYnUoHciNUwHV_vq0XSu_sN_zU3A9R7AZLFtIvbWp39O8EowKYsf0YF7AQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>871003408</pqid></control><display><type>article</type><title>Alcanivorax pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium</title><source>MEDLINE</source><source>Microbiology Society</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Lai, Qiliang ; Wang, Liping ; Liu, Yuhui ; Fu, Yuanyuan ; Zhong, Huanzi ; Wang, Baojiang ; Chen, Liang ; Wang, Jianning ; Sun, Fengqin ; Shao, Zongze</creator><creatorcontrib>Lai, Qiliang ; Wang, Liping ; Liu, Yuhui ; Fu, Yuanyuan ; Zhong, Huanzi ; Wang, Baojiang ; Chen, Liang ; Wang, Jianning ; Sun, Fengqin ; Shao, Zongze</creatorcontrib><description>A taxonomic study was carried out on a novel bacterial strain, designated W11-5(T), which was isolated from a pyrene-degrading consortium enriched from deep-sea sediment of the Pacific Ocean. The isolate was Gram-reaction-negative and oxidase- and catalase-positive. Growth was observed in 0.5-12 % (w/v) NaCl and at 10-42 °C. On the basis of 16S rRNA gene sequence analysis, strain W11-5(T) was shown to belong to the genus Alcanivorax with a close relation to A. dieselolei B-5(T) (93.9 % 16S rRNA sequence similarity), A. balearicus MACL04(T) (93.1 %), A. hongdengensis A-11-3(T) (93.1 %), A. borkumensis SK2(T) (93.0 %), A. venustensis ISO4(T) (93.0 %) and A. jadensis T9(T) (92.9 %). Similarities between the gyrB gene sequences of W11-5(T) and other species of the genus Alcanivorax were between 76.8 and 80.8 %. The principal fatty acids were C(12 : 0) 3-OH (8.0 %), C(16 : 0) (29.1 %) and C(18 : 1)ω7c (27.4 %). The G+C content of the chromosomal DNA was 60.8 mol%. Based on its morphology, physiology and fatty acid composition as well as the results of 16S rRNA and gyrB gene sequence analyses, strain W11-5(T) ( = MCCC 1A00474(T) = CCTCC AB 208236(T) = LMG 25514(T)) represents a novel species of the genus Alcanivorax, for which the name Alcanivorax pacificus sp. nov. is proposed.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.022368-0</identifier><identifier>PMID: 20584816</identifier><language>eng</language><publisher>Reading: Society for General Microbiology</publisher><subject>Alcanivoraceae - genetics ; Alcanivoraceae - isolation & purification ; Alcanivoraceae - metabolism ; Alcanivoraceae - physiology ; Animal, plant and microbial ecology ; Bacteriology ; Base Composition ; Biological and medical sciences ; Catalase - metabolism ; Cluster Analysis ; DNA Gyrase - genetics ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Geologic Sediments - microbiology ; Microbial ecology ; Microbiology ; Molecular Sequence Data ; Oxidoreductases - metabolism ; Pacific Ocean ; Phylogeny ; Pyrenes - metabolism ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Sodium Chloride - metabolism ; Systematics ; Temperature ; Various environments (extraatmospheric space, air, water)</subject><ispartof>International journal of systematic and evolutionary microbiology, 2011-06, Vol.61 (Pt 6), p.1370-1374</ispartof><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c364t-14255c62205968a0bab687104a150a6b83abdd0a66a7632b2db27b545ae34bc93</citedby><cites>FETCH-LOGICAL-c364t-14255c62205968a0bab687104a150a6b83abdd0a66a7632b2db27b545ae34bc93</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24294155$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20584816$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lai, Qiliang</creatorcontrib><creatorcontrib>Wang, Liping</creatorcontrib><creatorcontrib>Liu, Yuhui</creatorcontrib><creatorcontrib>Fu, Yuanyuan</creatorcontrib><creatorcontrib>Zhong, Huanzi</creatorcontrib><creatorcontrib>Wang, Baojiang</creatorcontrib><creatorcontrib>Chen, Liang</creatorcontrib><creatorcontrib>Wang, Jianning</creatorcontrib><creatorcontrib>Sun, Fengqin</creatorcontrib><creatorcontrib>Shao, Zongze</creatorcontrib><title>Alcanivorax pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A taxonomic study was carried out on a novel bacterial strain, designated W11-5(T), which was isolated from a pyrene-degrading consortium enriched from deep-sea sediment of the Pacific Ocean. The isolate was Gram-reaction-negative and oxidase- and catalase-positive. Growth was observed in 0.5-12 % (w/v) NaCl and at 10-42 °C. On the basis of 16S rRNA gene sequence analysis, strain W11-5(T) was shown to belong to the genus Alcanivorax with a close relation to A. dieselolei B-5(T) (93.9 % 16S rRNA sequence similarity), A. balearicus MACL04(T) (93.1 %), A. hongdengensis A-11-3(T) (93.1 %), A. borkumensis SK2(T) (93.0 %), A. venustensis ISO4(T) (93.0 %) and A. jadensis T9(T) (92.9 %). Similarities between the gyrB gene sequences of W11-5(T) and other species of the genus Alcanivorax were between 76.8 and 80.8 %. The principal fatty acids were C(12 : 0) 3-OH (8.0 %), C(16 : 0) (29.1 %) and C(18 : 1)ω7c (27.4 %). The G+C content of the chromosomal DNA was 60.8 mol%. Based on its morphology, physiology and fatty acid composition as well as the results of 16S rRNA and gyrB gene sequence analyses, strain W11-5(T) ( = MCCC 1A00474(T) = CCTCC AB 208236(T) = LMG 25514(T)) represents a novel species of the genus Alcanivorax, for which the name Alcanivorax pacificus sp. nov. is proposed.</description><subject>Alcanivoraceae - genetics</subject><subject>Alcanivoraceae - isolation & purification</subject><subject>Alcanivoraceae - metabolism</subject><subject>Alcanivoraceae - physiology</subject><subject>Animal, plant and microbial ecology</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>Catalase - metabolism</subject><subject>Cluster Analysis</subject><subject>DNA Gyrase - genetics</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Geologic Sediments - microbiology</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Oxidoreductases - metabolism</subject><subject>Pacific Ocean</subject><subject>Phylogeny</subject><subject>Pyrenes - metabolism</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sodium Chloride - metabolism</subject><subject>Systematics</subject><subject>Temperature</subject><subject>Various environments (extraatmospheric space, air, water)</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkE1LxDAQhoMoun5cPUou4sXWSZpk2-MifsGCl_UcJmkqkbapyVbcf2-XXfU0L8MzL8NDyCWDnEFV3fmPlEMOnBeqzOCAzJhQKpNQiMO_zNUJOU3pA2BaAByTEw6yFCVTM7JatBZ7_xUiftMBrW-8HRNNQ0778JXfUp9Ci2tX0yaGjiKtnRuy5JAOm-h6l9XuPWLt-3dqQ59CXPuxOydHDbbJXeznGXl7fFjdP2fL16eX-8Uys4US64wJLqVVfPqmUiWCQaPKOQOBTAIqUxZo6npKCueq4IbXhs-NFBJdIYytijNys-sdYvgcXVrrzifr2hZ7F8akt2WTCSgnMt-RNoaUomv0EH2HcaMZ6K1IPYnUoHciNUwHV_vq0XSu_sN_zU3A9R7AZLFtIvbWp39O8EowKYsf0YF7AQ</recordid><startdate>20110601</startdate><enddate>20110601</enddate><creator>Lai, Qiliang</creator><creator>Wang, Liping</creator><creator>Liu, Yuhui</creator><creator>Fu, Yuanyuan</creator><creator>Zhong, Huanzi</creator><creator>Wang, Baojiang</creator><creator>Chen, Liang</creator><creator>Wang, Jianning</creator><creator>Sun, Fengqin</creator><creator>Shao, Zongze</creator><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20110601</creationdate><title>Alcanivorax pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium</title><author>Lai, Qiliang ; Wang, Liping ; Liu, Yuhui ; Fu, Yuanyuan ; Zhong, Huanzi ; Wang, Baojiang ; Chen, Liang ; Wang, Jianning ; Sun, Fengqin ; Shao, Zongze</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c364t-14255c62205968a0bab687104a150a6b83abdd0a66a7632b2db27b545ae34bc93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Alcanivoraceae - genetics</topic><topic>Alcanivoraceae - isolation & purification</topic><topic>Alcanivoraceae - metabolism</topic><topic>Alcanivoraceae - physiology</topic><topic>Animal, plant and microbial ecology</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Catalase - metabolism</topic><topic>Cluster Analysis</topic><topic>DNA Gyrase - genetics</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Geologic Sediments - microbiology</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Oxidoreductases - metabolism</topic><topic>Pacific Ocean</topic><topic>Phylogeny</topic><topic>Pyrenes - metabolism</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sodium Chloride - metabolism</topic><topic>Systematics</topic><topic>Temperature</topic><topic>Various environments (extraatmospheric space, air, water)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lai, Qiliang</creatorcontrib><creatorcontrib>Wang, Liping</creatorcontrib><creatorcontrib>Liu, Yuhui</creatorcontrib><creatorcontrib>Fu, Yuanyuan</creatorcontrib><creatorcontrib>Zhong, Huanzi</creatorcontrib><creatorcontrib>Wang, Baojiang</creatorcontrib><creatorcontrib>Chen, Liang</creatorcontrib><creatorcontrib>Wang, Jianning</creatorcontrib><creatorcontrib>Sun, Fengqin</creatorcontrib><creatorcontrib>Shao, Zongze</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lai, Qiliang</au><au>Wang, Liping</au><au>Liu, Yuhui</au><au>Fu, Yuanyuan</au><au>Zhong, Huanzi</au><au>Wang, Baojiang</au><au>Chen, Liang</au><au>Wang, Jianning</au><au>Sun, Fengqin</au><au>Shao, Zongze</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Alcanivorax pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2011-06-01</date><risdate>2011</risdate><volume>61</volume><issue>Pt 6</issue><spage>1370</spage><epage>1374</epage><pages>1370-1374</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A taxonomic study was carried out on a novel bacterial strain, designated W11-5(T), which was isolated from a pyrene-degrading consortium enriched from deep-sea sediment of the Pacific Ocean. The isolate was Gram-reaction-negative and oxidase- and catalase-positive. Growth was observed in 0.5-12 % (w/v) NaCl and at 10-42 °C. On the basis of 16S rRNA gene sequence analysis, strain W11-5(T) was shown to belong to the genus Alcanivorax with a close relation to A. dieselolei B-5(T) (93.9 % 16S rRNA sequence similarity), A. balearicus MACL04(T) (93.1 %), A. hongdengensis A-11-3(T) (93.1 %), A. borkumensis SK2(T) (93.0 %), A. venustensis ISO4(T) (93.0 %) and A. jadensis T9(T) (92.9 %). Similarities between the gyrB gene sequences of W11-5(T) and other species of the genus Alcanivorax were between 76.8 and 80.8 %. The principal fatty acids were C(12 : 0) 3-OH (8.0 %), C(16 : 0) (29.1 %) and C(18 : 1)ω7c (27.4 %). The G+C content of the chromosomal DNA was 60.8 mol%. Based on its morphology, physiology and fatty acid composition as well as the results of 16S rRNA and gyrB gene sequence analyses, strain W11-5(T) ( = MCCC 1A00474(T) = CCTCC AB 208236(T) = LMG 25514(T)) represents a novel species of the genus Alcanivorax, for which the name Alcanivorax pacificus sp. nov. is proposed.</abstract><cop>Reading</cop><pub>Society for General Microbiology</pub><pmid>20584816</pmid><doi>10.1099/ijs.0.022368-0</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2011-06, Vol.61 (Pt 6), p.1370-1374 |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_871003408 |
| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Alcanivoraceae - genetics Alcanivoraceae - isolation & purification Alcanivoraceae - metabolism Alcanivoraceae - physiology Animal, plant and microbial ecology Bacteriology Base Composition Biological and medical sciences Catalase - metabolism Cluster Analysis DNA Gyrase - genetics DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fatty Acids - analysis Fundamental and applied biological sciences. Psychology Geologic Sediments - microbiology Microbial ecology Microbiology Molecular Sequence Data Oxidoreductases - metabolism Pacific Ocean Phylogeny Pyrenes - metabolism RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Sodium Chloride - metabolism Systematics Temperature Various environments (extraatmospheric space, air, water) |
| title | Alcanivorax pacificus sp. nov., isolated from a deep-sea pyrene-degrading consortium |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-08T20%3A15%3A51IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Alcanivorax%20pacificus%20sp.%20nov.,%20isolated%20from%20a%20deep-sea%20pyrene-degrading%20consortium&rft.jtitle=International%20journal%20of%20systematic%20and%20evolutionary%20microbiology&rft.au=Lai,%20Qiliang&rft.date=2011-06-01&rft.volume=61&rft.issue=Pt%206&rft.spage=1370&rft.epage=1374&rft.pages=1370-1374&rft.issn=1466-5026&rft.eissn=1466-5034&rft_id=info:doi/10.1099/ijs.0.022368-0&rft_dat=%3Cproquest_cross%3E871003408%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=871003408&rft_id=info:pmid/20584816&rfr_iscdi=true |