Genetic diversity of 17 Y-short tandem repeats in Indian population
Abstract Seventeen short tandem repeats (DYS389I, DYS390, DYS389II, DYS19, DYS385a/b, DYS393, DYS391, DYS392, DYS439, DYS438, DYS456, DYS458, DYS635, Y(GATA)H4, DYS437, and DYS448) from the non-recombining region of the human Y-chromosome were analyzed in 750 unrelated males representing four major...
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| Veröffentlicht in: | Forensic science international : genetics 2011-08, Vol.5 (4), p.363-367 |
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| creator | Ghosh, Tania Kalpana, D Mukerjee, Sanjukta Mukherjee, Meeta Sharma, Anil Kumar Nath, Subhankar Rathod, Varsha Rajesh Thakar, Mukesh Kumar Jha, Ganga Nath |
| description | Abstract Seventeen short tandem repeats (DYS389I, DYS390, DYS389II, DYS19, DYS385a/b, DYS393, DYS391, DYS392, DYS439, DYS438, DYS456, DYS458, DYS635, Y(GATA)H4, DYS437, and DYS448) from the non-recombining region of the human Y-chromosome were analyzed in 750 unrelated males representing four major linguistic families of India using Amp Fl STR® Yfiler® PCR Amplification kit. A total of 612 distinct haplotypes were observed, of which 545 were unique. Rare alleles for the loci DYS456, DYS458, DYS635, Y(GATA)H4, and duplication at the loci DYS389I and DYS389II were also observed. To understand the genetic diversity of the Indian population, and utility of Y-STRs in forensics, the locus diversity, haplotype diversity, and discrimination capacity in all populations was determined. MDS plot based on pairwise Φst and AMOVA revealed the high genetic heterogeneity among the Indian populations due to linguistic diversity and social stratification. |
| doi_str_mv | 10.1016/j.fsigen.2010.12.007 |
| format | Article |
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A total of 612 distinct haplotypes were observed, of which 545 were unique. Rare alleles for the loci DYS456, DYS458, DYS635, Y(GATA)H4, and duplication at the loci DYS389I and DYS389II were also observed. To understand the genetic diversity of the Indian population, and utility of Y-STRs in forensics, the locus diversity, haplotype diversity, and discrimination capacity in all populations was determined. MDS plot based on pairwise Φst and AMOVA revealed the high genetic heterogeneity among the Indian populations due to linguistic diversity and social stratification.</description><identifier>ISSN: 1872-4973</identifier><identifier>EISSN: 1878-0326</identifier><identifier>DOI: 10.1016/j.fsigen.2010.12.007</identifier><identifier>PMID: 21277272</identifier><language>eng</language><publisher>Netherlands</publisher><subject>Chromosomes, Human, Y ; DNA Fingerprinting ; Ethnic Groups - genetics ; Genetic Variation ; Genetics, Population ; Haplotypes ; Humans ; India ; Male ; Microsatellite Repeats ; Pathology ; Polymerase Chain Reaction</subject><ispartof>Forensic science international : genetics, 2011-08, Vol.5 (4), p.363-367</ispartof><rights>Elsevier Ireland Ltd</rights><rights>Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c361t-cad96d8c20f047aca793faab49c7244443de57491c6774c20a49662e2b74470d3</citedby><cites>FETCH-LOGICAL-c361t-cad96d8c20f047aca793faab49c7244443de57491c6774c20a49662e2b74470d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21277272$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ghosh, Tania</creatorcontrib><creatorcontrib>Kalpana, D</creatorcontrib><creatorcontrib>Mukerjee, Sanjukta</creatorcontrib><creatorcontrib>Mukherjee, Meeta</creatorcontrib><creatorcontrib>Sharma, Anil Kumar</creatorcontrib><creatorcontrib>Nath, Subhankar</creatorcontrib><creatorcontrib>Rathod, Varsha Rajesh</creatorcontrib><creatorcontrib>Thakar, Mukesh Kumar</creatorcontrib><creatorcontrib>Jha, Ganga Nath</creatorcontrib><title>Genetic diversity of 17 Y-short tandem repeats in Indian population</title><title>Forensic science international : genetics</title><addtitle>Forensic Sci Int Genet</addtitle><description>Abstract Seventeen short tandem repeats (DYS389I, DYS390, DYS389II, DYS19, DYS385a/b, DYS393, DYS391, DYS392, DYS439, DYS438, DYS456, DYS458, DYS635, Y(GATA)H4, DYS437, and DYS448) from the non-recombining region of the human Y-chromosome were analyzed in 750 unrelated males representing four major linguistic families of India using Amp Fl STR® Yfiler® PCR Amplification kit. A total of 612 distinct haplotypes were observed, of which 545 were unique. Rare alleles for the loci DYS456, DYS458, DYS635, Y(GATA)H4, and duplication at the loci DYS389I and DYS389II were also observed. To understand the genetic diversity of the Indian population, and utility of Y-STRs in forensics, the locus diversity, haplotype diversity, and discrimination capacity in all populations was determined. MDS plot based on pairwise Φst and AMOVA revealed the high genetic heterogeneity among the Indian populations due to linguistic diversity and social stratification.</description><subject>Chromosomes, Human, Y</subject><subject>DNA Fingerprinting</subject><subject>Ethnic Groups - genetics</subject><subject>Genetic Variation</subject><subject>Genetics, Population</subject><subject>Haplotypes</subject><subject>Humans</subject><subject>India</subject><subject>Male</subject><subject>Microsatellite Repeats</subject><subject>Pathology</subject><subject>Polymerase Chain Reaction</subject><issn>1872-4973</issn><issn>1878-0326</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kUFPwyAUx4nRuDn9BsZw89QJlEJ7MTGLTpMlHtSDJ8LoqzJbWqFdsm8vddN3gZDf_728HwhdUjKnhIqbzbwK9gPcnJHxic0JkUdoSnOZJyRl4vj3zhJeyHSCzkLYEJIVkmanaMIok5JJNkWLJTjorcGl3YIPtt_htsJU4vckfLa-x712JTTYQwe6D9g6_ORKqx3u2m6odW9bd45OKl0HuDicM_T2cP-6eExWz8unxd0qMamgfWJ0WYgyN4xUhEtttCzSSus1L4xkPFZaQiZ5QY2QkkdM80IIBmwtOZekTGfoet-38-33AKFXjQ0G6lo7aIegclFwwgWnkeR70vg2BA-V6rxttN8pStRoT23U3p4a7SnKVLQXY1eHAcO6gfI_9KcrArd7AOKaWwtemdo6a3T9BTsIm3bwLhpQVIXYUb2MHzD6p5TEykT6A-ndgKg</recordid><startdate>20110801</startdate><enddate>20110801</enddate><creator>Ghosh, Tania</creator><creator>Kalpana, D</creator><creator>Mukerjee, Sanjukta</creator><creator>Mukherjee, Meeta</creator><creator>Sharma, Anil Kumar</creator><creator>Nath, Subhankar</creator><creator>Rathod, Varsha Rajesh</creator><creator>Thakar, Mukesh Kumar</creator><creator>Jha, Ganga Nath</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20110801</creationdate><title>Genetic diversity of 17 Y-short tandem repeats in Indian population</title><author>Ghosh, Tania ; Kalpana, D ; Mukerjee, Sanjukta ; Mukherjee, Meeta ; Sharma, Anil Kumar ; Nath, Subhankar ; Rathod, Varsha Rajesh ; Thakar, Mukesh Kumar ; Jha, Ganga Nath</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c361t-cad96d8c20f047aca793faab49c7244443de57491c6774c20a49662e2b74470d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Chromosomes, Human, Y</topic><topic>DNA Fingerprinting</topic><topic>Ethnic Groups - genetics</topic><topic>Genetic Variation</topic><topic>Genetics, Population</topic><topic>Haplotypes</topic><topic>Humans</topic><topic>India</topic><topic>Male</topic><topic>Microsatellite Repeats</topic><topic>Pathology</topic><topic>Polymerase Chain Reaction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ghosh, Tania</creatorcontrib><creatorcontrib>Kalpana, D</creatorcontrib><creatorcontrib>Mukerjee, Sanjukta</creatorcontrib><creatorcontrib>Mukherjee, Meeta</creatorcontrib><creatorcontrib>Sharma, Anil Kumar</creatorcontrib><creatorcontrib>Nath, Subhankar</creatorcontrib><creatorcontrib>Rathod, Varsha Rajesh</creatorcontrib><creatorcontrib>Thakar, Mukesh Kumar</creatorcontrib><creatorcontrib>Jha, Ganga Nath</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Forensic science international : genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ghosh, Tania</au><au>Kalpana, D</au><au>Mukerjee, Sanjukta</au><au>Mukherjee, Meeta</au><au>Sharma, Anil Kumar</au><au>Nath, Subhankar</au><au>Rathod, Varsha Rajesh</au><au>Thakar, Mukesh Kumar</au><au>Jha, Ganga Nath</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity of 17 Y-short tandem repeats in Indian population</atitle><jtitle>Forensic science international : genetics</jtitle><addtitle>Forensic Sci Int Genet</addtitle><date>2011-08-01</date><risdate>2011</risdate><volume>5</volume><issue>4</issue><spage>363</spage><epage>367</epage><pages>363-367</pages><issn>1872-4973</issn><eissn>1878-0326</eissn><abstract>Abstract Seventeen short tandem repeats (DYS389I, DYS390, DYS389II, DYS19, DYS385a/b, DYS393, DYS391, DYS392, DYS439, DYS438, DYS456, DYS458, DYS635, Y(GATA)H4, DYS437, and DYS448) from the non-recombining region of the human Y-chromosome were analyzed in 750 unrelated males representing four major linguistic families of India using Amp Fl STR® Yfiler® PCR Amplification kit. A total of 612 distinct haplotypes were observed, of which 545 were unique. Rare alleles for the loci DYS456, DYS458, DYS635, Y(GATA)H4, and duplication at the loci DYS389I and DYS389II were also observed. To understand the genetic diversity of the Indian population, and utility of Y-STRs in forensics, the locus diversity, haplotype diversity, and discrimination capacity in all populations was determined. MDS plot based on pairwise Φst and AMOVA revealed the high genetic heterogeneity among the Indian populations due to linguistic diversity and social stratification.</abstract><cop>Netherlands</cop><pmid>21277272</pmid><doi>10.1016/j.fsigen.2010.12.007</doi><tpages>5</tpages></addata></record> |
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| source | MEDLINE; Elsevier ScienceDirect Journals Complete |
| subjects | Chromosomes, Human, Y DNA Fingerprinting Ethnic Groups - genetics Genetic Variation Genetics, Population Haplotypes Humans India Male Microsatellite Repeats Pathology Polymerase Chain Reaction |
| title | Genetic diversity of 17 Y-short tandem repeats in Indian population |
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