The Fe 2+ Site of Photosynthetic Reaction Centers Probed by Multiple Scattering X-Ray Absorption Fine Structure Spectroscopy: Improving Structure Resolution in Dry Matrices
We report on the x-ray absorption fine structure of the Fe 2+ site in photosynthetic reaction centers from Rhodobacter sphaeroides. Crystallographic studies show that Fe 2+ is ligated with four N ɛ atoms from four histidine (His) residues and two O ɛ atoms from a Glu residue. By considering multiple...
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Veröffentlicht in: | Biophysical journal 2008-07, Vol.95 (2), p.814-822 |
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creator | Veronesi, Giulia Giachini, Lisa Francia, Francesco Mallardi, Antonia Palazzo, Gerardo Boscherini, Federico Venturoli, Giovanni |
description | We report on the x-ray absorption fine structure of the Fe
2+ site in photosynthetic reaction centers from
Rhodobacter sphaeroides. Crystallographic studies show that Fe
2+ is ligated with four N
ɛ
atoms from four histidine (His) residues and two O
ɛ
atoms from a Glu residue. By considering multiple scattering contributions to the x-ray absorption fine structure function, we improved the structural resolution of the site: His residues were split into two groups, characterized by different Fe-N
ɛ
distances, and two distinct Fe-O
ɛ
bond lengths resolved. The effect of the environment was studied by embedding the reaction centers into a polyvinyl alcohol film and into a dehydrated trehalose matrix. Incorporation into trehalose caused elongation in one of the two Fe-N
ɛ
distances, and in one Fe-O
ɛ
bond length, compared with the polyvinyl alcohol film. The asymmetry detected in the cluster of His residues and its response to incorporation into trehalose are ascribed to the hydrogen bonds between two His residues and the quinone acceptors. The structural distortions observed in the trehalose matrix indicate a strong interaction between the reaction-centers surface and the water-trehalose matrix, which propagates deeply into the interior of the protein. The absence of matrix effects on the Debye-Waller factors is brought back to the static heterogeneity and rigidity of the ligand cluster. |
doi_str_mv | 10.1529/biophysj.108.132654 |
format | Article |
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2+ site in photosynthetic reaction centers from
Rhodobacter sphaeroides. Crystallographic studies show that Fe
2+ is ligated with four N
ɛ
atoms from four histidine (His) residues and two O
ɛ
atoms from a Glu residue. By considering multiple scattering contributions to the x-ray absorption fine structure function, we improved the structural resolution of the site: His residues were split into two groups, characterized by different Fe-N
ɛ
distances, and two distinct Fe-O
ɛ
bond lengths resolved. The effect of the environment was studied by embedding the reaction centers into a polyvinyl alcohol film and into a dehydrated trehalose matrix. Incorporation into trehalose caused elongation in one of the two Fe-N
ɛ
distances, and in one Fe-O
ɛ
bond length, compared with the polyvinyl alcohol film. The asymmetry detected in the cluster of His residues and its response to incorporation into trehalose are ascribed to the hydrogen bonds between two His residues and the quinone acceptors. The structural distortions observed in the trehalose matrix indicate a strong interaction between the reaction-centers surface and the water-trehalose matrix, which propagates deeply into the interior of the protein. The absence of matrix effects on the Debye-Waller factors is brought back to the static heterogeneity and rigidity of the ligand cluster.</description><identifier>ISSN: 0006-3495</identifier><identifier>EISSN: 1542-0086</identifier><identifier>DOI: 10.1529/biophysj.108.132654</identifier><language>eng</language><publisher>Elsevier Inc</publisher><subject>Clusters ; Fine structure ; Iron ; Polyvinyl alcohols ; Residues ; Trehalose ; X-rays</subject><ispartof>Biophysical journal, 2008-07, Vol.95 (2), p.814-822</ispartof><rights>2008 The Biophysical Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S000634950870256X$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids></links><search><creatorcontrib>Veronesi, Giulia</creatorcontrib><creatorcontrib>Giachini, Lisa</creatorcontrib><creatorcontrib>Francia, Francesco</creatorcontrib><creatorcontrib>Mallardi, Antonia</creatorcontrib><creatorcontrib>Palazzo, Gerardo</creatorcontrib><creatorcontrib>Boscherini, Federico</creatorcontrib><creatorcontrib>Venturoli, Giovanni</creatorcontrib><title>The Fe 2+ Site of Photosynthetic Reaction Centers Probed by Multiple Scattering X-Ray Absorption Fine Structure Spectroscopy: Improving Structure Resolution in Dry Matrices</title><title>Biophysical journal</title><description>We report on the x-ray absorption fine structure of the Fe
2+ site in photosynthetic reaction centers from
Rhodobacter sphaeroides. Crystallographic studies show that Fe
2+ is ligated with four N
ɛ
atoms from four histidine (His) residues and two O
ɛ
atoms from a Glu residue. By considering multiple scattering contributions to the x-ray absorption fine structure function, we improved the structural resolution of the site: His residues were split into two groups, characterized by different Fe-N
ɛ
distances, and two distinct Fe-O
ɛ
bond lengths resolved. The effect of the environment was studied by embedding the reaction centers into a polyvinyl alcohol film and into a dehydrated trehalose matrix. Incorporation into trehalose caused elongation in one of the two Fe-N
ɛ
distances, and in one Fe-O
ɛ
bond length, compared with the polyvinyl alcohol film. The asymmetry detected in the cluster of His residues and its response to incorporation into trehalose are ascribed to the hydrogen bonds between two His residues and the quinone acceptors. The structural distortions observed in the trehalose matrix indicate a strong interaction between the reaction-centers surface and the water-trehalose matrix, which propagates deeply into the interior of the protein. The absence of matrix effects on the Debye-Waller factors is brought back to the static heterogeneity and rigidity of the ligand cluster.</description><subject>Clusters</subject><subject>Fine structure</subject><subject>Iron</subject><subject>Polyvinyl alcohols</subject><subject>Residues</subject><subject>Trehalose</subject><subject>X-rays</subject><issn>0006-3495</issn><issn>1542-0086</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNpFkc9O3DAQxi1EJRbaJ-DiWw8oy9iJvU4lDmjpFiSqomUPvUWxPWGNQpzaDlLeqQ9Zw7bqaUYzv2_-6CPknMGSCV5faufH_RyflwzUkpVciuqILJioeAGg5DFZAIAsyqoWJ-Q0xmcAxgWwBfm92yPdIOUX9NElpL6jD3uffJyHtMfkDN1ia5LzA13jkDBE-hC8Rkv1TL9PfXJjj_TRtCn33PBEfxbbdqbXOvowvss2bshACpNJU8jZiCYFH40f5y_07mUM_vVN95_YYvT99K51A70JeU-bgjMYP5IPXdtH_PQ3npHd5utufVvc__h2t76-L1BJKGQnOl2V3GowALUVTDDOzApVaVqrNEdbW65QmHplZa1LC6xdyUrolemsEuUZ-XwYm2_7NWFMzYuLBvu-HdBPsVGyqngJEjJ5dSAxX_PqMDTROBwMWhfym431rmHQvHnU_PMoF1Rz8Kj8AxSci78</recordid><startdate>20080701</startdate><enddate>20080701</enddate><creator>Veronesi, Giulia</creator><creator>Giachini, Lisa</creator><creator>Francia, Francesco</creator><creator>Mallardi, Antonia</creator><creator>Palazzo, Gerardo</creator><creator>Boscherini, Federico</creator><creator>Venturoli, Giovanni</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>7TB</scope><scope>7U5</scope><scope>8FD</scope><scope>FR3</scope><scope>L7M</scope></search><sort><creationdate>20080701</creationdate><title>The Fe 2+ Site of Photosynthetic Reaction Centers Probed by Multiple Scattering X-Ray Absorption Fine Structure Spectroscopy: Improving Structure Resolution in Dry Matrices</title><author>Veronesi, Giulia ; Giachini, Lisa ; Francia, Francesco ; Mallardi, Antonia ; Palazzo, Gerardo ; Boscherini, Federico ; Venturoli, Giovanni</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-e860-6f5fb432db0c009d515121c7e83cad8b2ed9d28e5c97d69b3d01a7645b7cfd853</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Clusters</topic><topic>Fine structure</topic><topic>Iron</topic><topic>Polyvinyl alcohols</topic><topic>Residues</topic><topic>Trehalose</topic><topic>X-rays</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Veronesi, Giulia</creatorcontrib><creatorcontrib>Giachini, Lisa</creatorcontrib><creatorcontrib>Francia, Francesco</creatorcontrib><creatorcontrib>Mallardi, Antonia</creatorcontrib><creatorcontrib>Palazzo, Gerardo</creatorcontrib><creatorcontrib>Boscherini, Federico</creatorcontrib><creatorcontrib>Venturoli, Giovanni</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><jtitle>Biophysical journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Veronesi, Giulia</au><au>Giachini, Lisa</au><au>Francia, Francesco</au><au>Mallardi, Antonia</au><au>Palazzo, Gerardo</au><au>Boscherini, Federico</au><au>Venturoli, Giovanni</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Fe 2+ Site of Photosynthetic Reaction Centers Probed by Multiple Scattering X-Ray Absorption Fine Structure Spectroscopy: Improving Structure Resolution in Dry Matrices</atitle><jtitle>Biophysical journal</jtitle><date>2008-07-01</date><risdate>2008</risdate><volume>95</volume><issue>2</issue><spage>814</spage><epage>822</epage><pages>814-822</pages><issn>0006-3495</issn><eissn>1542-0086</eissn><abstract>We report on the x-ray absorption fine structure of the Fe
2+ site in photosynthetic reaction centers from
Rhodobacter sphaeroides. Crystallographic studies show that Fe
2+ is ligated with four N
ɛ
atoms from four histidine (His) residues and two O
ɛ
atoms from a Glu residue. By considering multiple scattering contributions to the x-ray absorption fine structure function, we improved the structural resolution of the site: His residues were split into two groups, characterized by different Fe-N
ɛ
distances, and two distinct Fe-O
ɛ
bond lengths resolved. The effect of the environment was studied by embedding the reaction centers into a polyvinyl alcohol film and into a dehydrated trehalose matrix. Incorporation into trehalose caused elongation in one of the two Fe-N
ɛ
distances, and in one Fe-O
ɛ
bond length, compared with the polyvinyl alcohol film. The asymmetry detected in the cluster of His residues and its response to incorporation into trehalose are ascribed to the hydrogen bonds between two His residues and the quinone acceptors. The structural distortions observed in the trehalose matrix indicate a strong interaction between the reaction-centers surface and the water-trehalose matrix, which propagates deeply into the interior of the protein. The absence of matrix effects on the Debye-Waller factors is brought back to the static heterogeneity and rigidity of the ligand cluster.</abstract><pub>Elsevier Inc</pub><doi>10.1529/biophysj.108.132654</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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source | Cell Press Free Archives; Elsevier ScienceDirect Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
subjects | Clusters Fine structure Iron Polyvinyl alcohols Residues Trehalose X-rays |
title | The Fe 2+ Site of Photosynthetic Reaction Centers Probed by Multiple Scattering X-Ray Absorption Fine Structure Spectroscopy: Improving Structure Resolution in Dry Matrices |
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