Assessment of association of rs2200733 on chromosome 4q25 with atrial fibrillation and ischemic stroke in a Chinese Han population

Atrial fibrillation (AF) is the most common arrhythmia in the clinical setting and an independent risk factor for stroke. Approximately 10 million Chinese people are affected by AF, but the genetic basis is largely unknown. A recent genome-wide association study in Iceland identified association bet...

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Veröffentlicht in:Human genetics 2009-12, Vol.126 (6), p.843-849
Hauptverfasser: Shi, Lisong, Li, Cong, Wang, Chuchu, Xia, Yunlong, Wu, Gang, Wang, Fan, Xu, Chengqi, Wang, Pengyun, Li, Xiuchun, Wang, Dan, Xiong, Xin, Bai, Ying, Liu, Mugen, Liu, Jingyu, Ren, Xiang, Gao, Lianjun, Wang, Binbin, Zeng, Qiutang, Yang, Bo, Ma, Xu, Yang, Yanzong, Tu, Xin, Wang, Qing Kenneth
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container_issue 6
container_start_page 843
container_title Human genetics
container_volume 126
creator Shi, Lisong
Li, Cong
Wang, Chuchu
Xia, Yunlong
Wu, Gang
Wang, Fan
Xu, Chengqi
Wang, Pengyun
Li, Xiuchun
Wang, Dan
Xiong, Xin
Bai, Ying
Liu, Mugen
Liu, Jingyu
Ren, Xiang
Gao, Lianjun
Wang, Binbin
Zeng, Qiutang
Yang, Bo
Ma, Xu
Yang, Yanzong
Tu, Xin
Wang, Qing Kenneth
description Atrial fibrillation (AF) is the most common arrhythmia in the clinical setting and an independent risk factor for stroke. Approximately 10 million Chinese people are affected by AF, but the genetic basis is largely unknown. A recent genome-wide association study in Iceland identified association between SNP rs2200733 on 4q25 and AF; however, many independent replication studies are essential to unequivocally validate this association. To assess the association between rs2200733 and AF as well as that between rs2200733 and ischemic stroke in a mainland Chinese Han population, we carried out case-control association studies with 383 AF patients versus 851 non-AF controls and 811 ischemic stroke patients versus 688 non-stroke controls. Highly significant association was detected between rs2200733 and AF in a Chinese Han population (allelic P = 3.7 × 10⁻¹¹ with OR = 1.81; genotypic P = 4.1 × 10⁻¹² with a dominant model). When the AF cases were divided into lone AF (32.6%) and other types of AF (67.4%), significantly stronger association was found with lone AF (OR = 2.40, P = 1.3 × 10⁻⁹ compared to OR = 1.59, P = 6.2 × 10⁻⁷ for other types of AF; P = 0.02 for two ORs). No significant association was found between rs2200733 and ischemic stroke. Our results suggest that SNP rs2200733 confers a highly significant risk of AF, but not ischemic stroke, in a more representative Chinese Han population in the mainland China.
doi_str_mv 10.1007/s00439-009-0737-3
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Approximately 10 million Chinese people are affected by AF, but the genetic basis is largely unknown. A recent genome-wide association study in Iceland identified association between SNP rs2200733 on 4q25 and AF; however, many independent replication studies are essential to unequivocally validate this association. To assess the association between rs2200733 and AF as well as that between rs2200733 and ischemic stroke in a mainland Chinese Han population, we carried out case-control association studies with 383 AF patients versus 851 non-AF controls and 811 ischemic stroke patients versus 688 non-stroke controls. Highly significant association was detected between rs2200733 and AF in a Chinese Han population (allelic P = 3.7 × 10⁻¹¹ with OR = 1.81; genotypic P = 4.1 × 10⁻¹² with a dominant model). When the AF cases were divided into lone AF (32.6%) and other types of AF (67.4%), significantly stronger association was found with lone AF (OR = 2.40, P = 1.3 × 10⁻⁹ compared to OR = 1.59, P = 6.2 × 10⁻⁷ for other types of AF; P = 0.02 for two ORs). No significant association was found between rs2200733 and ischemic stroke. 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Biological and molecular evolution ; Genomes ; Genomics ; Heart ; Hospitals ; Human ; Human Genetics ; Humans ; Ischemia ; Male ; Medical research ; Medical sciences ; Medicine, Experimental ; Metabolic Diseases ; Methods, theories and miscellaneous ; Middle Aged ; Molecular Medicine ; Original Investigation ; Polymorphism, Single Nucleotide ; Risk factors ; Stroke ; Stroke (Disease) ; Stroke - genetics ; Stroke patients</subject><ispartof>Human genetics, 2009-12, Vol.126 (6), p.843-849</ispartof><rights>Springer-Verlag 2009</rights><rights>2015 INIST-CNRS</rights><rights>COPYRIGHT 2009 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c517t-38242ad42c87d289b90cf4125b5ae321a98310fc2cc342d6b89b4317050237473</citedby><cites>FETCH-LOGICAL-c517t-38242ad42c87d289b90cf4125b5ae321a98310fc2cc342d6b89b4317050237473</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00439-009-0737-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00439-009-0737-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=22167337$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19707791$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shi, Lisong</creatorcontrib><creatorcontrib>Li, Cong</creatorcontrib><creatorcontrib>Wang, Chuchu</creatorcontrib><creatorcontrib>Xia, Yunlong</creatorcontrib><creatorcontrib>Wu, Gang</creatorcontrib><creatorcontrib>Wang, Fan</creatorcontrib><creatorcontrib>Xu, Chengqi</creatorcontrib><creatorcontrib>Wang, Pengyun</creatorcontrib><creatorcontrib>Li, Xiuchun</creatorcontrib><creatorcontrib>Wang, Dan</creatorcontrib><creatorcontrib>Xiong, Xin</creatorcontrib><creatorcontrib>Bai, Ying</creatorcontrib><creatorcontrib>Liu, Mugen</creatorcontrib><creatorcontrib>Liu, Jingyu</creatorcontrib><creatorcontrib>Ren, Xiang</creatorcontrib><creatorcontrib>Gao, Lianjun</creatorcontrib><creatorcontrib>Wang, Binbin</creatorcontrib><creatorcontrib>Zeng, Qiutang</creatorcontrib><creatorcontrib>Yang, Bo</creatorcontrib><creatorcontrib>Ma, Xu</creatorcontrib><creatorcontrib>Yang, Yanzong</creatorcontrib><creatorcontrib>Tu, Xin</creatorcontrib><creatorcontrib>Wang, Qing Kenneth</creatorcontrib><title>Assessment of association of rs2200733 on chromosome 4q25 with atrial fibrillation and ischemic stroke in a Chinese Han population</title><title>Human genetics</title><addtitle>Hum Genet</addtitle><addtitle>Hum Genet</addtitle><description>Atrial fibrillation (AF) is the most common arrhythmia in the clinical setting and an independent risk factor for stroke. Approximately 10 million Chinese people are affected by AF, but the genetic basis is largely unknown. A recent genome-wide association study in Iceland identified association between SNP rs2200733 on 4q25 and AF; however, many independent replication studies are essential to unequivocally validate this association. To assess the association between rs2200733 and AF as well as that between rs2200733 and ischemic stroke in a mainland Chinese Han population, we carried out case-control association studies with 383 AF patients versus 851 non-AF controls and 811 ischemic stroke patients versus 688 non-stroke controls. Highly significant association was detected between rs2200733 and AF in a Chinese Han population (allelic P = 3.7 × 10⁻¹¹ with OR = 1.81; genotypic P = 4.1 × 10⁻¹² with a dominant model). 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Biological and molecular evolution</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Heart</subject><subject>Hospitals</subject><subject>Human</subject><subject>Human Genetics</subject><subject>Humans</subject><subject>Ischemia</subject><subject>Male</subject><subject>Medical research</subject><subject>Medical sciences</subject><subject>Medicine, Experimental</subject><subject>Metabolic Diseases</subject><subject>Methods, theories and miscellaneous</subject><subject>Middle Aged</subject><subject>Molecular Medicine</subject><subject>Original Investigation</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Risk factors</subject><subject>Stroke</subject><subject>Stroke (Disease)</subject><subject>Stroke - genetics</subject><subject>Stroke patients</subject><issn>0340-6717</issn><issn>1432-1203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kk1v1DAQhiMEokvhB3ABCwSIQ2D8FSfH1QpopUpIlJ4tr9fZdUnirScRcOWXM6usqMqhB8sa-5nvtyiec_jAAcxHBFCyKQHoGGlK-aBYcCVFyQXIh8UCpIKyMtycFE8QrwG4boR-XJzwxoAxDV8Uf5aIAbEPw8hSyxxi8tGNMQ0HM6MQlEhKRrbf5dQnTH1g6kZo9jOOO-bGHF3H2rjOsetmRzdsWES_C330DMecfgQW6ZmtdnEIGNiZG9g-7aeZf1o8al2H4dnxPi2uPn_6vjorL75-OV8tL0qvuRlLWQsl3EYJX5uNqJt1A75VXOi1dkEK7ppacmi98F4qsanWhCjJDWgQ0igjT4t3c9x9TjdTwNH2VGWgqoeQJrR1RePhvFJEvr2XFFwYUKYi8NV_4HWa8kBdEKMpsRKaoNcztHVdsHFo05idP0S0S9qB1rpqGqLe36F8Gsbwa9y6CdGeX367y_KZ9Tkh5tDafY69y78tB3tQhp2VYUkZ9qAMK8nnxbHUad2Hza3HUQoEvDkCDr3r2uwGH_EfJwSvSAiHMYqZQ_oatiHf9nxf9pezU-uSddtMga8uBXAJtKAKapB_AZcZ1So</recordid><startdate>20091201</startdate><enddate>20091201</enddate><creator>Shi, Lisong</creator><creator>Li, Cong</creator><creator>Wang, Chuchu</creator><creator>Xia, Yunlong</creator><creator>Wu, Gang</creator><creator>Wang, Fan</creator><creator>Xu, Chengqi</creator><creator>Wang, Pengyun</creator><creator>Li, Xiuchun</creator><creator>Wang, Dan</creator><creator>Xiong, Xin</creator><creator>Bai, Ying</creator><creator>Liu, Mugen</creator><creator>Liu, Jingyu</creator><creator>Ren, Xiang</creator><creator>Gao, Lianjun</creator><creator>Wang, Binbin</creator><creator>Zeng, Qiutang</creator><creator>Yang, Bo</creator><creator>Ma, Xu</creator><creator>Yang, Yanzong</creator><creator>Tu, Xin</creator><creator>Wang, Qing Kenneth</creator><general>Berlin/Heidelberg : Springer-Verlag</general><general>Springer-Verlag</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7QP</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20091201</creationdate><title>Assessment of association of rs2200733 on chromosome 4q25 with atrial fibrillation and ischemic stroke in a Chinese Han population</title><author>Shi, Lisong ; Li, Cong ; Wang, Chuchu ; Xia, Yunlong ; Wu, Gang ; Wang, Fan ; Xu, Chengqi ; Wang, Pengyun ; Li, Xiuchun ; Wang, Dan ; Xiong, Xin ; Bai, Ying ; Liu, Mugen ; Liu, Jingyu ; Ren, Xiang ; Gao, Lianjun ; Wang, Binbin ; Zeng, Qiutang ; Yang, Bo ; Ma, Xu ; Yang, Yanzong ; Tu, Xin ; Wang, Qing Kenneth</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c517t-38242ad42c87d289b90cf4125b5ae321a98310fc2cc342d6b89b4317050237473</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Asian Continental Ancestry Group - genetics</topic><topic>Atrial fibrillation</topic><topic>Atrial Fibrillation - genetics</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Brain Ischemia - genetics</topic><topic>Cardiac arrhythmia</topic><topic>Cardiac dysrhythmias</topic><topic>Cardiology. 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Approximately 10 million Chinese people are affected by AF, but the genetic basis is largely unknown. A recent genome-wide association study in Iceland identified association between SNP rs2200733 on 4q25 and AF; however, many independent replication studies are essential to unequivocally validate this association. To assess the association between rs2200733 and AF as well as that between rs2200733 and ischemic stroke in a mainland Chinese Han population, we carried out case-control association studies with 383 AF patients versus 851 non-AF controls and 811 ischemic stroke patients versus 688 non-stroke controls. Highly significant association was detected between rs2200733 and AF in a Chinese Han population (allelic P = 3.7 × 10⁻¹¹ with OR = 1.81; genotypic P = 4.1 × 10⁻¹² with a dominant model). When the AF cases were divided into lone AF (32.6%) and other types of AF (67.4%), significantly stronger association was found with lone AF (OR = 2.40, P = 1.3 × 10⁻⁹ compared to OR = 1.59, P = 6.2 × 10⁻⁷ for other types of AF; P = 0.02 for two ORs). No significant association was found between rs2200733 and ischemic stroke. Our results suggest that SNP rs2200733 confers a highly significant risk of AF, but not ischemic stroke, in a more representative Chinese Han population in the mainland China.</abstract><cop>Berlin/Heidelberg</cop><pub>Berlin/Heidelberg : Springer-Verlag</pub><pmid>19707791</pmid><doi>10.1007/s00439-009-0737-3</doi><tpages>7</tpages></addata></record>
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source MEDLINE; SpringerLink Journals - AutoHoldings
subjects Asian Continental Ancestry Group - genetics
Atrial fibrillation
Atrial Fibrillation - genetics
Biological and medical sciences
Biomedical and Life Sciences
Biomedicine
Brain Ischemia - genetics
Cardiac arrhythmia
Cardiac dysrhythmias
Cardiology. Vascular system
Chromosomes
Chromosomes, Human, Pair 4
Classical genetics, quantitative genetics, hybrids
Female
Fundamental and applied biological sciences. Psychology
Gene Function
Genetic aspects
Genetic research
Genetics of eukaryotes. Biological and molecular evolution
Genomes
Genomics
Heart
Hospitals
Human
Human Genetics
Humans
Ischemia
Male
Medical research
Medical sciences
Medicine, Experimental
Metabolic Diseases
Methods, theories and miscellaneous
Middle Aged
Molecular Medicine
Original Investigation
Polymorphism, Single Nucleotide
Risk factors
Stroke
Stroke (Disease)
Stroke - genetics
Stroke patients
title Assessment of association of rs2200733 on chromosome 4q25 with atrial fibrillation and ischemic stroke in a Chinese Han population
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