A microsatellite (SSR) based linkage map of Brassica rapa
In the present study we describe the construction of a genetic linkage map for the Brassica rapa (AA) genome that will act as a key resource in undertaking future structural and functional genomic studies in B. rapa. A F 2 mapping population consisting of 48 F 2 individual plants developed following...
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| Veröffentlicht in: | New biotechnology 2009-11, Vol.26 (5), p.239-243 |
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| creator | Kapoor, Rahul Banga, Surindar Singh Banga, Shashi Kaur |
| description | In the present study we describe the construction of a genetic linkage map for the
Brassica rapa (AA) genome that will act as a key resource in undertaking future structural and functional genomic studies in
B. rapa. A F
2 mapping population consisting of 48 F
2 individual plants developed following hybridization of 2 inbred lines Bathari mandi and IC 331817 was used to construct the map. The map comprises 53 SSR markers derived from 3 different public domain resources. Nine linkage groups along with a small subgroup were identified and designated as R
1–R
9 through alignment and orientation using SSR markers in common with existing
B. rapa reference linkage maps. The total length of the genetic linkage map was 354.6
c
m with an average interval of 6.6
c
m between adjacent loci. The length of linkage groups ranged from 28.0
c
m to 44.2
c
m for R
6 and R
1A, respectively. The number variability of markers in the 9 linkage groups ranged from 3 for R
6 to 10 for R
1. Of the 53 SSR markers assigned to the linkage groups, only 5 (9.4%) showed deviation from the expected segregation ratio. The development of this map is vital to the genome integration and genetic information and will enable the international research community to share resources and data for the improvement of
B. rapa and other cultivated
Brassica species. |
| doi_str_mv | 10.1016/j.nbt.2009.09.003 |
| format | Article |
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Brassica rapa (AA) genome that will act as a key resource in undertaking future structural and functional genomic studies in
B. rapa. A F
2 mapping population consisting of 48 F
2 individual plants developed following hybridization of 2 inbred lines Bathari mandi and IC 331817 was used to construct the map. The map comprises 53 SSR markers derived from 3 different public domain resources. Nine linkage groups along with a small subgroup were identified and designated as R
1–R
9 through alignment and orientation using SSR markers in common with existing
B. rapa reference linkage maps. The total length of the genetic linkage map was 354.6
c
m with an average interval of 6.6
c
m between adjacent loci. The length of linkage groups ranged from 28.0
c
m to 44.2
c
m for R
6 and R
1A, respectively. The number variability of markers in the 9 linkage groups ranged from 3 for R
6 to 10 for R
1. Of the 53 SSR markers assigned to the linkage groups, only 5 (9.4%) showed deviation from the expected segregation ratio. The development of this map is vital to the genome integration and genetic information and will enable the international research community to share resources and data for the improvement of
B. rapa and other cultivated
Brassica species.</description><identifier>ISSN: 1871-6784</identifier><identifier>EISSN: 1876-4347</identifier><identifier>DOI: 10.1016/j.nbt.2009.09.003</identifier><identifier>PMID: 19761878</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Brassica rapa - genetics ; Chromosome Mapping ; Crosses, Genetic ; Genetic Markers ; Microsatellite Repeats - genetics ; Polymorphism, Genetic</subject><ispartof>New biotechnology, 2009-11, Vol.26 (5), p.239-243</ispartof><rights>2009 Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c384t-f5cbe5bd13b57fc4c844846c39c4175213330032e1af17322caeabe20f7753393</citedby><cites>FETCH-LOGICAL-c384t-f5cbe5bd13b57fc4c844846c39c4175213330032e1af17322caeabe20f7753393</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.nbt.2009.09.003$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3548,27922,27923,45993</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19761878$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kapoor, Rahul</creatorcontrib><creatorcontrib>Banga, Surindar Singh</creatorcontrib><creatorcontrib>Banga, Shashi Kaur</creatorcontrib><title>A microsatellite (SSR) based linkage map of Brassica rapa</title><title>New biotechnology</title><addtitle>N Biotechnol</addtitle><description>In the present study we describe the construction of a genetic linkage map for the
Brassica rapa (AA) genome that will act as a key resource in undertaking future structural and functional genomic studies in
B. rapa. A F
2 mapping population consisting of 48 F
2 individual plants developed following hybridization of 2 inbred lines Bathari mandi and IC 331817 was used to construct the map. The map comprises 53 SSR markers derived from 3 different public domain resources. Nine linkage groups along with a small subgroup were identified and designated as R
1–R
9 through alignment and orientation using SSR markers in common with existing
B. rapa reference linkage maps. The total length of the genetic linkage map was 354.6
c
m with an average interval of 6.6
c
m between adjacent loci. The length of linkage groups ranged from 28.0
c
m to 44.2
c
m for R
6 and R
1A, respectively. The number variability of markers in the 9 linkage groups ranged from 3 for R
6 to 10 for R
1. Of the 53 SSR markers assigned to the linkage groups, only 5 (9.4%) showed deviation from the expected segregation ratio. The development of this map is vital to the genome integration and genetic information and will enable the international research community to share resources and data for the improvement of
B. rapa and other cultivated
Brassica species.</description><subject>Brassica rapa - genetics</subject><subject>Chromosome Mapping</subject><subject>Crosses, Genetic</subject><subject>Genetic Markers</subject><subject>Microsatellite Repeats - genetics</subject><subject>Polymorphism, Genetic</subject><issn>1871-6784</issn><issn>1876-4347</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE1LxDAQhoMo7rr6A7xIb-qhNemkSYundfELFgRXzyFNp5K1XyZdwX9v6y54UxiYgXnnnZmHkFNGI0aZuFpHTd5HMaVZNAaFPTJlqRQhBy73f2oWCpnyCTnyfk2pYJlgh2TCMimGZjol2TyorXGt1z1Wle0xuFitni-DXHssgso27_oNg1p3QVsGN057b40OnO70MTkodeXxZJdn5PXu9mXxEC6f7h8X82VoIOV9WCYmxyQvGOSJLA03KecpFwYyw5lMYgYAw-UxMl0yCXFsNOocY1pKmQBkMCPnW9_OtR8b9L2qrTfDsbrBduNVKijIDOLkX6UEEFSyYduMsK1y_Nw7LFXnbK3dl2JUjWjVWg1o1YhWjUFhmDnbuW_yGovfiR3LQXC9FeBA49OiU95YbAwW1qHpVdHaP-y_AVHphqA</recordid><startdate>20091130</startdate><enddate>20091130</enddate><creator>Kapoor, Rahul</creator><creator>Banga, Surindar Singh</creator><creator>Banga, Shashi Kaur</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope></search><sort><creationdate>20091130</creationdate><title>A microsatellite (SSR) based linkage map of Brassica rapa</title><author>Kapoor, Rahul ; Banga, Surindar Singh ; Banga, Shashi Kaur</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c384t-f5cbe5bd13b57fc4c844846c39c4175213330032e1af17322caeabe20f7753393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Brassica rapa - genetics</topic><topic>Chromosome Mapping</topic><topic>Crosses, Genetic</topic><topic>Genetic Markers</topic><topic>Microsatellite Repeats - genetics</topic><topic>Polymorphism, Genetic</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kapoor, Rahul</creatorcontrib><creatorcontrib>Banga, Surindar Singh</creatorcontrib><creatorcontrib>Banga, Shashi Kaur</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>New biotechnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kapoor, Rahul</au><au>Banga, Surindar Singh</au><au>Banga, Shashi Kaur</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A microsatellite (SSR) based linkage map of Brassica rapa</atitle><jtitle>New biotechnology</jtitle><addtitle>N Biotechnol</addtitle><date>2009-11-30</date><risdate>2009</risdate><volume>26</volume><issue>5</issue><spage>239</spage><epage>243</epage><pages>239-243</pages><issn>1871-6784</issn><eissn>1876-4347</eissn><abstract>In the present study we describe the construction of a genetic linkage map for the
Brassica rapa (AA) genome that will act as a key resource in undertaking future structural and functional genomic studies in
B. rapa. A F
2 mapping population consisting of 48 F
2 individual plants developed following hybridization of 2 inbred lines Bathari mandi and IC 331817 was used to construct the map. The map comprises 53 SSR markers derived from 3 different public domain resources. Nine linkage groups along with a small subgroup were identified and designated as R
1–R
9 through alignment and orientation using SSR markers in common with existing
B. rapa reference linkage maps. The total length of the genetic linkage map was 354.6
c
m with an average interval of 6.6
c
m between adjacent loci. The length of linkage groups ranged from 28.0
c
m to 44.2
c
m for R
6 and R
1A, respectively. The number variability of markers in the 9 linkage groups ranged from 3 for R
6 to 10 for R
1. Of the 53 SSR markers assigned to the linkage groups, only 5 (9.4%) showed deviation from the expected segregation ratio. The development of this map is vital to the genome integration and genetic information and will enable the international research community to share resources and data for the improvement of
B. rapa and other cultivated
Brassica species.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>19761878</pmid><doi>10.1016/j.nbt.2009.09.003</doi><tpages>5</tpages></addata></record> |
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| ispartof | New biotechnology, 2009-11, Vol.26 (5), p.239-243 |
| issn | 1871-6784 1876-4347 |
| language | eng |
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| source | MEDLINE; Elsevier ScienceDirect Journals Complete |
| subjects | Brassica rapa - genetics Chromosome Mapping Crosses, Genetic Genetic Markers Microsatellite Repeats - genetics Polymorphism, Genetic |
| title | A microsatellite (SSR) based linkage map of Brassica rapa |
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