Characterization of potential antiviral resistance mutations in hepatitis B virus reverse transcriptase sequences in treatment-naïve Chinese patients

Full-length hepatitis B virus (HBV) reverse transcriptase (RT) sequences were amplified and sequenced among 192 nucleos(t)ide analogue (NA)-naïve Chinese patients with chronic hepatitis B. Deduced amino acids (AAs) at 42 previously reported potential NA resistance (NAr) mutation positions in RT regi...

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Veröffentlicht in:Antiviral research 2010-03, Vol.85 (3), p.512-519
Hauptverfasser: Liu, Bao-Ming, Li, Tong, Xu, Jie, Li, Xiao-Guang, Dong, Jian-Ping, Yan, Ping, Yang, Jing-Xian, Yan, Ling, Gao, Zhi-Yong, Li, Wen-Peng, Sun, Xie-Wen, Wang, Yu-Hua, Jiao, Xiu-Juan, Hou, Chun-Sheng, Zhuang, Hui
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container_end_page 519
container_issue 3
container_start_page 512
container_title Antiviral research
container_volume 85
creator Liu, Bao-Ming
Li, Tong
Xu, Jie
Li, Xiao-Guang
Dong, Jian-Ping
Yan, Ping
Yang, Jing-Xian
Yan, Ling
Gao, Zhi-Yong
Li, Wen-Peng
Sun, Xie-Wen
Wang, Yu-Hua
Jiao, Xiu-Juan
Hou, Chun-Sheng
Zhuang, Hui
description Full-length hepatitis B virus (HBV) reverse transcriptase (RT) sequences were amplified and sequenced among 192 nucleos(t)ide analogue (NA)-naïve Chinese patients with chronic hepatitis B. Deduced amino acids (AAs) at 42 previously reported potential NA resistance (NAr) mutation positions in RT region were analyzed. Patients were found with either B-genotype (28.65%) or C-genotype (71.35%) infections. Rt53, rt91, rt124, rt134, rt221, rt224, rt238 and rt256 were identified as B- and C-genotype-dependent polymorphic AA positions. AA substitutions at 11 classical NAr mutation positions, i.e. rt80, rt169, rt173, rt180, rt181, rt184, rt194, rt202, rt204, rt236 and rt250, were not detected. However, potential NAr mutations were found in 30.73% (59/192) isolates, which involved 18 positions including rt53, rt207, rt229, rt238 and rt256, etc. The concomitant AA changes of HBsAg occurred in 16.67% (32/192) isolates including sG145R mutation. One-third of mutation positions were located in functional RT domains (e.g. rt207 and rt233), A–B interdomains (overlapping HBsAg ‘a’ determinant and showing most concomitant immune-associated mutations) and non-A–B interdomains (e.g. rt191 and rt213), respectively. Genotypes B and C each showed several preferred positions to mutate. These results might provide insights into understanding the evolution and selection basis of NAr HBV strains under antiviral therapy.
doi_str_mv 10.1016/j.antiviral.2009.12.006
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Drug treatments ; Polymorphic ; Resistance ; RNA-Directed DNA Polymerase - genetics ; Sequence Analysis, DNA ; Viral diseases ; Viral hepatitis ; Young Adult</subject><ispartof>Antiviral research, 2010-03, Vol.85 (3), p.512-519</ispartof><rights>2009 Elsevier B.V.</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c498t-9373098182a51c055bebf300a11bfa225c6b35dd681b19fbbaf5cbbe1386999c3</citedby><cites>FETCH-LOGICAL-c498t-9373098182a51c055bebf300a11bfa225c6b35dd681b19fbbaf5cbbe1386999c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.antiviral.2009.12.006$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,777,781,3537,27905,27906,45976</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=22499658$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20034521$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Bao-Ming</creatorcontrib><creatorcontrib>Li, Tong</creatorcontrib><creatorcontrib>Xu, Jie</creatorcontrib><creatorcontrib>Li, Xiao-Guang</creatorcontrib><creatorcontrib>Dong, Jian-Ping</creatorcontrib><creatorcontrib>Yan, Ping</creatorcontrib><creatorcontrib>Yang, Jing-Xian</creatorcontrib><creatorcontrib>Yan, Ling</creatorcontrib><creatorcontrib>Gao, Zhi-Yong</creatorcontrib><creatorcontrib>Li, Wen-Peng</creatorcontrib><creatorcontrib>Sun, Xie-Wen</creatorcontrib><creatorcontrib>Wang, Yu-Hua</creatorcontrib><creatorcontrib>Jiao, Xiu-Juan</creatorcontrib><creatorcontrib>Hou, Chun-Sheng</creatorcontrib><creatorcontrib>Zhuang, Hui</creatorcontrib><title>Characterization of potential antiviral resistance mutations in hepatitis B virus reverse transcriptase sequences in treatment-naïve Chinese patients</title><title>Antiviral research</title><addtitle>Antiviral Res</addtitle><description>Full-length hepatitis B virus (HBV) reverse transcriptase (RT) sequences were amplified and sequenced among 192 nucleos(t)ide analogue (NA)-naïve Chinese patients with chronic hepatitis B. Deduced amino acids (AAs) at 42 previously reported potential NA resistance (NAr) mutation positions in RT region were analyzed. Patients were found with either B-genotype (28.65%) or C-genotype (71.35%) infections. Rt53, rt91, rt124, rt134, rt221, rt224, rt238 and rt256 were identified as B- and C-genotype-dependent polymorphic AA positions. AA substitutions at 11 classical NAr mutation positions, i.e. rt80, rt169, rt173, rt180, rt181, rt184, rt194, rt202, rt204, rt236 and rt250, were not detected. However, potential NAr mutations were found in 30.73% (59/192) isolates, which involved 18 positions including rt53, rt207, rt229, rt238 and rt256, etc. The concomitant AA changes of HBsAg occurred in 16.67% (32/192) isolates including sG145R mutation. 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Drug treatments</subject><subject>Polymorphic</subject><subject>Resistance</subject><subject>RNA-Directed DNA Polymerase - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Viral diseases</subject><subject>Viral hepatitis</subject><subject>Young Adult</subject><issn>0166-3542</issn><issn>1872-9096</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU2OEzEQhS0EYsLAFcAbxKob_8Td9nKImAFpJDawtmx3teKo_7CdSHAQrsEhuBiVSQjLWVllfa9e6T1C3nBWc8ab97vaTSUeYnJDLRgzNRc1Y80TsuK6FZVhpnlKVkg2lVRrcUVe5LxjSLRGPydXKJFrJfiK_NpsXXKhQIo_XYnzROeeLnMBXO8GenGhCXLMxU0B6LgvD2imcaJbWHAoMdMPFMl9RvIAKQMtyU05pLgUh1OG73tA9YOoJHBlRI9qcn9-H4ButnECpI678Du_JM96N2R4dX6vybfbj183n6r7L3efNzf3VVgbXSojW8mM5lo4xQNTyoPvJWOOc987IVRovFRd12juuem9d70K3gOXujHGBHlN3p32LmnG-3KxY8wBhsFNMO-z1Q1DC23aR8lWykYLrRiS7YkMac45QW-XFEeXfljO7LE9u7OXXO2xPcuFxW5Q-frssfcjdBfdv7oQeHsGXA5u6DHhEPN_TqyNaZRG7ubEAWZ3iJBsDvGYfhcThGK7OT56zF845sI6</recordid><startdate>20100301</startdate><enddate>20100301</enddate><creator>Liu, Bao-Ming</creator><creator>Li, Tong</creator><creator>Xu, Jie</creator><creator>Li, Xiao-Guang</creator><creator>Dong, Jian-Ping</creator><creator>Yan, Ping</creator><creator>Yang, Jing-Xian</creator><creator>Yan, Ling</creator><creator>Gao, Zhi-Yong</creator><creator>Li, Wen-Peng</creator><creator>Sun, Xie-Wen</creator><creator>Wang, Yu-Hua</creator><creator>Jiao, Xiu-Juan</creator><creator>Hou, Chun-Sheng</creator><creator>Zhuang, Hui</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>P64</scope></search><sort><creationdate>20100301</creationdate><title>Characterization of potential antiviral resistance mutations in hepatitis B virus reverse transcriptase sequences in treatment-naïve Chinese patients</title><author>Liu, Bao-Ming ; Li, Tong ; Xu, Jie ; Li, Xiao-Guang ; Dong, Jian-Ping ; Yan, Ping ; Yang, Jing-Xian ; Yan, Ling ; Gao, Zhi-Yong ; Li, Wen-Peng ; Sun, Xie-Wen ; Wang, Yu-Hua ; Jiao, Xiu-Juan ; Hou, Chun-Sheng ; Zhuang, Hui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c498t-9373098182a51c055bebf300a11bfa225c6b35dd681b19fbbaf5cbbe1386999c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Adolescent</topic><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Amino Acid Substitution - genetics</topic><topic>Antibiotics. Antiinfectious agents. Antiparasitic agents</topic><topic>Antiviral agents</topic><topic>Antiviral Agents - pharmacology</topic><topic>Biological and medical sciences</topic><topic>China</topic><topic>Drug Resistance, Viral</topic><topic>Female</topic><topic>Genotype</topic><topic>Hepatitis B Surface Antigens - genetics</topic><topic>Hepatitis B virus</topic><topic>Hepatitis B virus - drug effects</topic><topic>Hepatitis B virus - genetics</topic><topic>Hepatitis B virus - isolation &amp; purification</topic><topic>Hepatitis B, Chronic - virology</topic><topic>Human viral diseases</topic><topic>Humans</topic><topic>Infectious diseases</topic><topic>Male</topic><topic>Medical sciences</topic><topic>Middle Aged</topic><topic>Molecular Sequence Data</topic><topic>Mutation</topic><topic>Mutation, Missense</topic><topic>Nucleos(t)ide analogue naïve</topic><topic>Pharmacology. 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Deduced amino acids (AAs) at 42 previously reported potential NA resistance (NAr) mutation positions in RT region were analyzed. Patients were found with either B-genotype (28.65%) or C-genotype (71.35%) infections. Rt53, rt91, rt124, rt134, rt221, rt224, rt238 and rt256 were identified as B- and C-genotype-dependent polymorphic AA positions. AA substitutions at 11 classical NAr mutation positions, i.e. rt80, rt169, rt173, rt180, rt181, rt184, rt194, rt202, rt204, rt236 and rt250, were not detected. However, potential NAr mutations were found in 30.73% (59/192) isolates, which involved 18 positions including rt53, rt207, rt229, rt238 and rt256, etc. The concomitant AA changes of HBsAg occurred in 16.67% (32/192) isolates including sG145R mutation. One-third of mutation positions were located in functional RT domains (e.g. rt207 and rt233), A–B interdomains (overlapping HBsAg ‘a’ determinant and showing most concomitant immune-associated mutations) and non-A–B interdomains (e.g. rt191 and rt213), respectively. Genotypes B and C each showed several preferred positions to mutate. These results might provide insights into understanding the evolution and selection basis of NAr HBV strains under antiviral therapy.</abstract><cop>Kidlington</cop><pub>Elsevier B.V</pub><pmid>20034521</pmid><doi>10.1016/j.antiviral.2009.12.006</doi><tpages>8</tpages></addata></record>
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subjects Adolescent
Adult
Aged
Aged, 80 and over
Amino Acid Substitution - genetics
Antibiotics. Antiinfectious agents. Antiparasitic agents
Antiviral agents
Antiviral Agents - pharmacology
Biological and medical sciences
China
Drug Resistance, Viral
Female
Genotype
Hepatitis B Surface Antigens - genetics
Hepatitis B virus
Hepatitis B virus - drug effects
Hepatitis B virus - genetics
Hepatitis B virus - isolation & purification
Hepatitis B, Chronic - virology
Human viral diseases
Humans
Infectious diseases
Male
Medical sciences
Middle Aged
Molecular Sequence Data
Mutation
Mutation, Missense
Nucleos(t)ide analogue naïve
Pharmacology. Drug treatments
Polymorphic
Resistance
RNA-Directed DNA Polymerase - genetics
Sequence Analysis, DNA
Viral diseases
Viral hepatitis
Young Adult
title Characterization of potential antiviral resistance mutations in hepatitis B virus reverse transcriptase sequences in treatment-naïve Chinese patients
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