Two seasons' study on nifH gene expression and nitrogen fixation by diazotrophic endophytes in sugarcane (Saccharum spp. hybrids): expression of nifH genes similar to those of rhizobia
To explore the presence and expression of the nifH gene of diazotrophic endophytes in sugarcane (Saccharum spp. hybrids) cv. NiF8, we conducted pot experiments for two seasons in a glasshouse from 10 June to 17 September (high temperature and long days) in 2005 and 1 September to 9 December (low tem...
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| Veröffentlicht in: | Plant and soil 2011-01, Vol.338 (1-2), p.435-449 |
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| creator | Thaweenut, Nisarat Hachisuka, Yusuke Ando, Shotaro Yanagisawa, Shuichi Yoneyama, Tadakatsu |
| description | To explore the presence and expression of the nifH gene of diazotrophic endophytes in sugarcane (Saccharum spp. hybrids) cv. NiF8, we conducted pot experiments for two seasons in a glasshouse from 10 June to 17 September (high temperature and long days) in 2005 and 1 September to 9 December (low temperature and short days) in 2006. The expression of nifH genes in the stems and roots of sugarcane plants at 50 (or 59) and 100 days after transplanting was investigated by reverse transcription (RT)-PCR and by examining the nifH nucleotide sequence diversity. N₂ fixation was assessed by the ¹⁵N-dilution method. The nifH RNA sequences in the stems and roots of the first experiment were similar to those of Bradyrhizobium sp. and Azorhizobium caulinodans. In the second experiment, nifH expression from these bacteria was not detected in the stems. nifH gene expression in the stems was in accordance with 18-24% N derived from air in the high-temperature season and negligible in the low-temperature season. Both the proliferation of N₂ fixers and expression of the nifH gene indicated that bacteria similar to rhizobia may contribute to N₂ fixation in sugarcane under our experimental conditions. |
| doi_str_mv | 10.1007/s11104-010-0557-1 |
| format | Article |
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NiF8, we conducted pot experiments for two seasons in a glasshouse from 10 June to 17 September (high temperature and long days) in 2005 and 1 September to 9 December (low temperature and short days) in 2006. The expression of nifH genes in the stems and roots of sugarcane plants at 50 (or 59) and 100 days after transplanting was investigated by reverse transcription (RT)-PCR and by examining the nifH nucleotide sequence diversity. N₂ fixation was assessed by the ¹⁵N-dilution method. The nifH RNA sequences in the stems and roots of the first experiment were similar to those of Bradyrhizobium sp. and Azorhizobium caulinodans. In the second experiment, nifH expression from these bacteria was not detected in the stems. nifH gene expression in the stems was in accordance with 18-24% N derived from air in the high-temperature season and negligible in the low-temperature season. Both the proliferation of N₂ fixers and expression of the nifH gene indicated that bacteria similar to rhizobia may contribute to N₂ fixation in sugarcane under our experimental conditions.</description><identifier>ISSN: 0032-079X</identifier><identifier>EISSN: 1573-5036</identifier><identifier>DOI: 10.1007/s11104-010-0557-1</identifier><identifier>CODEN: PLSOA2</identifier><language>eng</language><publisher>Dordrecht: Dordrecht : Springer Netherlands</publisher><subject>Agricultural soils ; Agronomy. Soil science and plant productions ; Animal, plant and microbial ecology ; Azorhizobium caulinodans ; Bacteria ; Biological and medical sciences ; Biomedical and Life Sciences ; Bradyrhizobium ; Corn ; Diazotroph ; DNA ; Ecology ; Endophyte ; Endophytes ; Fixation ; Fundamental and applied biological sciences. Psychology ; Gene expression ; General agronomy. Plant production ; Genes ; High temperature ; Hybrids ; Life Sciences ; Low temperature ; nifH ; Nitrogen ; Nitrogen fixation ; Nucleotide sequences ; Plant biology ; Plant Physiology ; Plant roots ; Plant Sciences ; Plants ; Regular Article ; RNA ; Roots ; RT-PCR ; Saccharum ; Seasons ; Soil fertility ; Soil Science & Conservation ; Soil-plant relationships. Soil fertility ; Soil-plant relationships. Soil fertility. Fertilization. Amendments ; Stems ; Sugar cane ; Sugarcane</subject><ispartof>Plant and soil, 2011-01, Vol.338 (1-2), p.435-449</ispartof><rights>Springer Science+Business Media B.V. 2010</rights><rights>2015 INIST-CNRS</rights><rights>COPYRIGHT 2011 Springer</rights><rights>Springer Science+Business Media B.V. 2011</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c528t-fab7114bf74ca9bd0c9977d99675272be3dc252a454c3090931b5ce626e0e24a3</citedby><cites>FETCH-LOGICAL-c528t-fab7114bf74ca9bd0c9977d99675272be3dc252a454c3090931b5ce626e0e24a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/24129115$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/24129115$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,778,782,801,27907,27908,41471,42540,51302,58000,58233</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=23791480$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Thaweenut, Nisarat</creatorcontrib><creatorcontrib>Hachisuka, Yusuke</creatorcontrib><creatorcontrib>Ando, Shotaro</creatorcontrib><creatorcontrib>Yanagisawa, Shuichi</creatorcontrib><creatorcontrib>Yoneyama, Tadakatsu</creatorcontrib><title>Two seasons' study on nifH gene expression and nitrogen fixation by diazotrophic endophytes in sugarcane (Saccharum spp. hybrids): expression of nifH genes similar to those of rhizobia</title><title>Plant and soil</title><addtitle>Plant Soil</addtitle><description>To explore the presence and expression of the nifH gene of diazotrophic endophytes in sugarcane (Saccharum spp. hybrids) cv. NiF8, we conducted pot experiments for two seasons in a glasshouse from 10 June to 17 September (high temperature and long days) in 2005 and 1 September to 9 December (low temperature and short days) in 2006. The expression of nifH genes in the stems and roots of sugarcane plants at 50 (or 59) and 100 days after transplanting was investigated by reverse transcription (RT)-PCR and by examining the nifH nucleotide sequence diversity. N₂ fixation was assessed by the ¹⁵N-dilution method. The nifH RNA sequences in the stems and roots of the first experiment were similar to those of Bradyrhizobium sp. and Azorhizobium caulinodans. In the second experiment, nifH expression from these bacteria was not detected in the stems. nifH gene expression in the stems was in accordance with 18-24% N derived from air in the high-temperature season and negligible in the low-temperature season. Both the proliferation of N₂ fixers and expression of the nifH gene indicated that bacteria similar to rhizobia may contribute to N₂ fixation in sugarcane under our experimental conditions.</description><subject>Agricultural soils</subject><subject>Agronomy. Soil science and plant productions</subject><subject>Animal, plant and microbial ecology</subject><subject>Azorhizobium caulinodans</subject><subject>Bacteria</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Bradyrhizobium</subject><subject>Corn</subject><subject>Diazotroph</subject><subject>DNA</subject><subject>Ecology</subject><subject>Endophyte</subject><subject>Endophytes</subject><subject>Fixation</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene expression</subject><subject>General agronomy. Plant production</subject><subject>Genes</subject><subject>High temperature</subject><subject>Hybrids</subject><subject>Life Sciences</subject><subject>Low temperature</subject><subject>nifH</subject><subject>Nitrogen</subject><subject>Nitrogen fixation</subject><subject>Nucleotide sequences</subject><subject>Plant biology</subject><subject>Plant Physiology</subject><subject>Plant roots</subject><subject>Plant Sciences</subject><subject>Plants</subject><subject>Regular Article</subject><subject>RNA</subject><subject>Roots</subject><subject>RT-PCR</subject><subject>Saccharum</subject><subject>Seasons</subject><subject>Soil fertility</subject><subject>Soil Science & Conservation</subject><subject>Soil-plant relationships. Soil fertility</subject><subject>Soil-plant relationships. Soil fertility. Fertilization. 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Soil science and plant productions</topic><topic>Animal, plant and microbial ecology</topic><topic>Azorhizobium caulinodans</topic><topic>Bacteria</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Bradyrhizobium</topic><topic>Corn</topic><topic>Diazotroph</topic><topic>DNA</topic><topic>Ecology</topic><topic>Endophyte</topic><topic>Endophytes</topic><topic>Fixation</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene expression</topic><topic>General agronomy. Plant production</topic><topic>Genes</topic><topic>High temperature</topic><topic>Hybrids</topic><topic>Life Sciences</topic><topic>Low temperature</topic><topic>nifH</topic><topic>Nitrogen</topic><topic>Nitrogen fixation</topic><topic>Nucleotide sequences</topic><topic>Plant biology</topic><topic>Plant Physiology</topic><topic>Plant roots</topic><topic>Plant Sciences</topic><topic>Plants</topic><topic>Regular Article</topic><topic>RNA</topic><topic>Roots</topic><topic>RT-PCR</topic><topic>Saccharum</topic><topic>Seasons</topic><topic>Soil fertility</topic><topic>Soil Science & Conservation</topic><topic>Soil-plant relationships. Soil fertility</topic><topic>Soil-plant relationships. Soil fertility. Fertilization. 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NiF8, we conducted pot experiments for two seasons in a glasshouse from 10 June to 17 September (high temperature and long days) in 2005 and 1 September to 9 December (low temperature and short days) in 2006. The expression of nifH genes in the stems and roots of sugarcane plants at 50 (or 59) and 100 days after transplanting was investigated by reverse transcription (RT)-PCR and by examining the nifH nucleotide sequence diversity. N₂ fixation was assessed by the ¹⁵N-dilution method. The nifH RNA sequences in the stems and roots of the first experiment were similar to those of Bradyrhizobium sp. and Azorhizobium caulinodans. In the second experiment, nifH expression from these bacteria was not detected in the stems. nifH gene expression in the stems was in accordance with 18-24% N derived from air in the high-temperature season and negligible in the low-temperature season. Both the proliferation of N₂ fixers and expression of the nifH gene indicated that bacteria similar to rhizobia may contribute to N₂ fixation in sugarcane under our experimental conditions.</abstract><cop>Dordrecht</cop><pub>Dordrecht : Springer Netherlands</pub><doi>10.1007/s11104-010-0557-1</doi><tpages>15</tpages></addata></record> |
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| subjects | Agricultural soils Agronomy. Soil science and plant productions Animal, plant and microbial ecology Azorhizobium caulinodans Bacteria Biological and medical sciences Biomedical and Life Sciences Bradyrhizobium Corn Diazotroph DNA Ecology Endophyte Endophytes Fixation Fundamental and applied biological sciences. Psychology Gene expression General agronomy. Plant production Genes High temperature Hybrids Life Sciences Low temperature nifH Nitrogen Nitrogen fixation Nucleotide sequences Plant biology Plant Physiology Plant roots Plant Sciences Plants Regular Article RNA Roots RT-PCR Saccharum Seasons Soil fertility Soil Science & Conservation Soil-plant relationships. Soil fertility Soil-plant relationships. Soil fertility. Fertilization. Amendments Stems Sugar cane Sugarcane |
| title | Two seasons' study on nifH gene expression and nitrogen fixation by diazotrophic endophytes in sugarcane (Saccharum spp. hybrids): expression of nifH genes similar to those of rhizobia |
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