Genotype and environment effects on rice (Oryza sativa L.) grain arsenic concentration in Bangladesh
Genetic analysis of 38 rice varieties released by the Bangladesh Rice Research Institute (BRRI) identified 34 as indica, 2 as admixed between indica and aus, and 4 as belonging to the aromatic/Group V subpopulation. Indica varieties developed for the two genotype-environment interaction (GEI) on gra...
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| creator | Ahmed, Zia U. Panaullah, Golam M. Gauch, Hugh McCouch, Susan R. Tyagi, Wricha Kabir, Mohammed S. Duxbury, John Malcolm |
| description | Genetic analysis of 38 rice varieties released by the Bangladesh Rice Research Institute (BRRI) identified 34 as indica, 2 as admixed between indica and aus, and 4 as belonging to the aromatic/Group V subpopulation. Indica varieties developed for the two genotype-environment interaction (GEI) on grain arsenic (As) concentration when these rice varieties were grown at ten BRRI research stations located across diverse agro-ecological zones in Bangladesh. G, E and GEI, significantly influenced grain As concentration in both seasons. Overall, E accounted for 69%–80%, G 9%–10% and GEI 10%–21% of the observed variability in grain As. One site, Satkhira had the highest mean grain As concentration and the largest interaction principle component analysis (IPCA) scores in both seasons, indicating maximum interaction with genotypes. Site effects were more pronounced in the boro than in the aman season. The soil level of poorly crystalline Fe-oxide (AOFe), the ratio of AOFe to associated As, soil phosphate extractable As and soil pH were important sub-components of E controlling rice grain As concentration. Irrespective of environment, the mean grain As concentration was significantly higher in the boro (0.290 mg As kg-1) than in the aman (0.154 mg As kg-1) season (p |
| doi_str_mv | 10.1007/s11104-010-0551-7 |
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Indica varieties developed for the two genotype-environment interaction (GEI) on grain arsenic (As) concentration when these rice varieties were grown at ten BRRI research stations located across diverse agro-ecological zones in Bangladesh. G, E and GEI, significantly influenced grain As concentration in both seasons. Overall, E accounted for 69%–80%, G 9%–10% and GEI 10%–21% of the observed variability in grain As. One site, Satkhira had the highest mean grain As concentration and the largest interaction principle component analysis (IPCA) scores in both seasons, indicating maximum interaction with genotypes. Site effects were more pronounced in the boro than in the aman season. The soil level of poorly crystalline Fe-oxide (AOFe), the ratio of AOFe to associated As, soil phosphate extractable As and soil pH were important sub-components of E controlling rice grain As concentration. Irrespective of environment, the mean grain As concentration was significantly higher in the boro (0.290 mg As kg-1) than in the aman (0.154 mg As kg-1) season (p<0.0001), though the reasons for this are unclear. Based on mean grain As concentration and stability across environments, the variety BR3 is currently the best choice for the boro season, while BR 23 and BRRI dhan 38 are the best choices for the aman season. Popular varieties BR 11 (aman) and BRRI dhan 28 and 29 (boro) had grain As concentrations close to the mean value and were fairly stable across environments, while high-yielding, short-duration aman season varieties (BRRI dhan 32, 33 and 39) developed for intensified cropping had relatively high grain As concentrations. Results suggest that genetic approaches to reducing As in rice grain will require the introduction of novel genetic variation and must be accompanied by appropriate management strategies to reduce As availability and uptake by rice.</description><identifier>ISSN: 0032-079X</identifier><identifier>EISSN: 1573-5036</identifier><identifier>DOI: 10.1007/s11104-010-0551-7</identifier><identifier>CODEN: PLSOA2</identifier><language>eng</language><publisher>Dordrecht: Springer</publisher><subject>Additives ; Agricultural soils ; Agrology ; Agronomy. Soil science and plant productions ; Analysis ; Animal, plant and microbial ecology ; Aromatics ; Arsenic ; Arsenic content ; Biological and medical sciences ; Biomedical and Life Sciences ; Ecology ; Fundamental and applied biological sciences. Psychology ; General agronomy. Plant production ; Genetic analysis ; Genetic diversity ; Genetics and breeding of economic plants ; Genotype & phenotype ; Genotype-environment interactions ; Genotypes ; Grain ; Grains ; Growing season ; Growing seasons ; Hostages ; Life Sciences ; Monsoons ; Oryza sativa ; Phosphate ; Phosphates ; Plant biology ; Plant Physiology ; Plant Sciences ; Plants ; Principal components analysis ; Regular Article ; Rice ; Soil ; Soil acidity ; Soil pH ; Soil pollution ; Soil Science & Conservation ; Soil sciences ; Soil water ; Soil-plant relationships. Soil fertility ; Soil-plant relationships. Soil fertility. Fertilization. Amendments ; Subpopulations ; winter</subject><ispartof>Plant and soil, 2011-01, Vol.338 (1/2), p.367-382</ispartof><rights>Springer Science+Business Media B.V. 2010</rights><rights>2015 INIST-CNRS</rights><rights>COPYRIGHT 2011 Springer</rights><rights>Springer Science+Business Media B.V. 2011</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c504t-502382289ae119fbe7c335486830fd826745d83e75aeb724b57f830d35b88fe23</citedby><cites>FETCH-LOGICAL-c504t-502382289ae119fbe7c335486830fd826745d83e75aeb724b57f830d35b88fe23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/24129110$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/24129110$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,799,27901,27902,41464,42533,51294,57992,58225</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=23791475$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Ahmed, Zia U.</creatorcontrib><creatorcontrib>Panaullah, Golam M.</creatorcontrib><creatorcontrib>Gauch, Hugh</creatorcontrib><creatorcontrib>McCouch, Susan R.</creatorcontrib><creatorcontrib>Tyagi, Wricha</creatorcontrib><creatorcontrib>Kabir, Mohammed S.</creatorcontrib><creatorcontrib>Duxbury, John Malcolm</creatorcontrib><title>Genotype and environment effects on rice (Oryza sativa L.) grain arsenic concentration in Bangladesh</title><title>Plant and soil</title><addtitle>Plant Soil</addtitle><description>Genetic analysis of 38 rice varieties released by the Bangladesh Rice Research Institute (BRRI) identified 34 as indica, 2 as admixed between indica and aus, and 4 as belonging to the aromatic/Group V subpopulation. Indica varieties developed for the two genotype-environment interaction (GEI) on grain arsenic (As) concentration when these rice varieties were grown at ten BRRI research stations located across diverse agro-ecological zones in Bangladesh. G, E and GEI, significantly influenced grain As concentration in both seasons. Overall, E accounted for 69%–80%, G 9%–10% and GEI 10%–21% of the observed variability in grain As. One site, Satkhira had the highest mean grain As concentration and the largest interaction principle component analysis (IPCA) scores in both seasons, indicating maximum interaction with genotypes. Site effects were more pronounced in the boro than in the aman season. The soil level of poorly crystalline Fe-oxide (AOFe), the ratio of AOFe to associated As, soil phosphate extractable As and soil pH were important sub-components of E controlling rice grain As concentration. Irrespective of environment, the mean grain As concentration was significantly higher in the boro (0.290 mg As kg-1) than in the aman (0.154 mg As kg-1) season (p<0.0001), though the reasons for this are unclear. Based on mean grain As concentration and stability across environments, the variety BR3 is currently the best choice for the boro season, while BR 23 and BRRI dhan 38 are the best choices for the aman season. Popular varieties BR 11 (aman) and BRRI dhan 28 and 29 (boro) had grain As concentrations close to the mean value and were fairly stable across environments, while high-yielding, short-duration aman season varieties (BRRI dhan 32, 33 and 39) developed for intensified cropping had relatively high grain As concentrations. Results suggest that genetic approaches to reducing As in rice grain will require the introduction of novel genetic variation and must be accompanied by appropriate management strategies to reduce As availability and uptake by rice.</description><subject>Additives</subject><subject>Agricultural soils</subject><subject>Agrology</subject><subject>Agronomy. Soil science and plant productions</subject><subject>Analysis</subject><subject>Animal, plant and microbial ecology</subject><subject>Aromatics</subject><subject>Arsenic</subject><subject>Arsenic content</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Ecology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General agronomy. Plant production</subject><subject>Genetic analysis</subject><subject>Genetic diversity</subject><subject>Genetics and breeding of economic plants</subject><subject>Genotype & phenotype</subject><subject>Genotype-environment interactions</subject><subject>Genotypes</subject><subject>Grain</subject><subject>Grains</subject><subject>Growing season</subject><subject>Growing seasons</subject><subject>Hostages</subject><subject>Life Sciences</subject><subject>Monsoons</subject><subject>Oryza sativa</subject><subject>Phosphate</subject><subject>Phosphates</subject><subject>Plant biology</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Plants</subject><subject>Principal components analysis</subject><subject>Regular Article</subject><subject>Rice</subject><subject>Soil</subject><subject>Soil acidity</subject><subject>Soil pH</subject><subject>Soil pollution</subject><subject>Soil Science & Conservation</subject><subject>Soil sciences</subject><subject>Soil water</subject><subject>Soil-plant relationships. Soil fertility</subject><subject>Soil-plant relationships. Soil fertility. Fertilization. Amendments</subject><subject>Subpopulations</subject><subject>winter</subject><issn>0032-079X</issn><issn>1573-5036</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9kV1rFDEYhQex4Fr9AV4IQRDrxWzzMfmYy1psFRZ604J3IZt5s2aZTdZktrD-et9ligUvJBchOc95OclpmneMLhml-rIyxmjXUkZbKiVr9YtmwaQWraRCvWwWlAreUt3_eNW8rnVLT2emFs1wCylPxz0QlwYC6TGWnHaQJgIhgJ8qyYmU6IFc3JXjb0eqm-KjI6vlZ7IpLibiSoUUPfE5efQV1NGCwheXNqMboP5805wFN1Z4-7SfNw83X--vv7Wru9vv11er1kvaTRiVC8O56R0w1oc1aC-E7IwygobBcKU7ORgBWjpYa96tpQ4oDUKujQnAxXnzaZ67L_nXAepkd7F6GEeXIB-qNVJpLVXHkPzwD7nNh5IwnDVMa02VOkHLGdq4EWxMIePrPK4BdhGfCyHi_ZVQ-JOYW6CBzQZfcq0Fgt2XuHPlaBm1p5rsXJPFmuypJqvR8_EpiavejaG45GP9a-RC96zTEjk-cxWltIHynPh_w9_Ppm2dcnke2jHeIyv-AEGQqZ4</recordid><startdate>20110101</startdate><enddate>20110101</enddate><creator>Ahmed, Zia U.</creator><creator>Panaullah, Golam M.</creator><creator>Gauch, Hugh</creator><creator>McCouch, Susan R.</creator><creator>Tyagi, Wricha</creator><creator>Kabir, Mohammed S.</creator><creator>Duxbury, John Malcolm</creator><general>Springer</general><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7ST</scope><scope>7T7</scope><scope>7X2</scope><scope>88A</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>SOI</scope><scope>7U7</scope></search><sort><creationdate>20110101</creationdate><title>Genotype and environment effects on rice (Oryza sativa L.) grain arsenic concentration in Bangladesh</title><author>Ahmed, Zia U. ; Panaullah, Golam M. ; Gauch, Hugh ; McCouch, Susan R. ; Tyagi, Wricha ; Kabir, Mohammed S. ; Duxbury, John Malcolm</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c504t-502382289ae119fbe7c335486830fd826745d83e75aeb724b57f830d35b88fe23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Additives</topic><topic>Agricultural soils</topic><topic>Agrology</topic><topic>Agronomy. Soil science and plant productions</topic><topic>Analysis</topic><topic>Animal, plant and microbial ecology</topic><topic>Aromatics</topic><topic>Arsenic</topic><topic>Arsenic content</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Ecology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General agronomy. Plant production</topic><topic>Genetic analysis</topic><topic>Genetic diversity</topic><topic>Genetics and breeding of economic plants</topic><topic>Genotype & phenotype</topic><topic>Genotype-environment interactions</topic><topic>Genotypes</topic><topic>Grain</topic><topic>Grains</topic><topic>Growing season</topic><topic>Growing seasons</topic><topic>Hostages</topic><topic>Life Sciences</topic><topic>Monsoons</topic><topic>Oryza sativa</topic><topic>Phosphate</topic><topic>Phosphates</topic><topic>Plant biology</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Plants</topic><topic>Principal components analysis</topic><topic>Regular Article</topic><topic>Rice</topic><topic>Soil</topic><topic>Soil acidity</topic><topic>Soil pH</topic><topic>Soil pollution</topic><topic>Soil Science & Conservation</topic><topic>Soil sciences</topic><topic>Soil water</topic><topic>Soil-plant relationships. Soil fertility</topic><topic>Soil-plant relationships. Soil fertility. Fertilization. Amendments</topic><topic>Subpopulations</topic><topic>winter</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ahmed, Zia U.</creatorcontrib><creatorcontrib>Panaullah, Golam M.</creatorcontrib><creatorcontrib>Gauch, Hugh</creatorcontrib><creatorcontrib>McCouch, Susan R.</creatorcontrib><creatorcontrib>Tyagi, Wricha</creatorcontrib><creatorcontrib>Kabir, Mohammed S.</creatorcontrib><creatorcontrib>Duxbury, John Malcolm</creatorcontrib><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Agricultural Science Collection</collection><collection>Biology Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>Toxicology Abstracts</collection><jtitle>Plant and soil</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ahmed, Zia U.</au><au>Panaullah, Golam M.</au><au>Gauch, Hugh</au><au>McCouch, Susan R.</au><au>Tyagi, Wricha</au><au>Kabir, Mohammed S.</au><au>Duxbury, John Malcolm</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genotype and environment effects on rice (Oryza sativa L.) grain arsenic concentration in Bangladesh</atitle><jtitle>Plant and soil</jtitle><stitle>Plant Soil</stitle><date>2011-01-01</date><risdate>2011</risdate><volume>338</volume><issue>1/2</issue><spage>367</spage><epage>382</epage><pages>367-382</pages><issn>0032-079X</issn><eissn>1573-5036</eissn><coden>PLSOA2</coden><abstract>Genetic analysis of 38 rice varieties released by the Bangladesh Rice Research Institute (BRRI) identified 34 as indica, 2 as admixed between indica and aus, and 4 as belonging to the aromatic/Group V subpopulation. Indica varieties developed for the two genotype-environment interaction (GEI) on grain arsenic (As) concentration when these rice varieties were grown at ten BRRI research stations located across diverse agro-ecological zones in Bangladesh. G, E and GEI, significantly influenced grain As concentration in both seasons. Overall, E accounted for 69%–80%, G 9%–10% and GEI 10%–21% of the observed variability in grain As. One site, Satkhira had the highest mean grain As concentration and the largest interaction principle component analysis (IPCA) scores in both seasons, indicating maximum interaction with genotypes. Site effects were more pronounced in the boro than in the aman season. The soil level of poorly crystalline Fe-oxide (AOFe), the ratio of AOFe to associated As, soil phosphate extractable As and soil pH were important sub-components of E controlling rice grain As concentration. Irrespective of environment, the mean grain As concentration was significantly higher in the boro (0.290 mg As kg-1) than in the aman (0.154 mg As kg-1) season (p<0.0001), though the reasons for this are unclear. Based on mean grain As concentration and stability across environments, the variety BR3 is currently the best choice for the boro season, while BR 23 and BRRI dhan 38 are the best choices for the aman season. Popular varieties BR 11 (aman) and BRRI dhan 28 and 29 (boro) had grain As concentrations close to the mean value and were fairly stable across environments, while high-yielding, short-duration aman season varieties (BRRI dhan 32, 33 and 39) developed for intensified cropping had relatively high grain As concentrations. Results suggest that genetic approaches to reducing As in rice grain will require the introduction of novel genetic variation and must be accompanied by appropriate management strategies to reduce As availability and uptake by rice.</abstract><cop>Dordrecht</cop><pub>Springer</pub><doi>10.1007/s11104-010-0551-7</doi><tpages>16</tpages></addata></record> |
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| subjects | Additives Agricultural soils Agrology Agronomy. Soil science and plant productions Analysis Animal, plant and microbial ecology Aromatics Arsenic Arsenic content Biological and medical sciences Biomedical and Life Sciences Ecology Fundamental and applied biological sciences. Psychology General agronomy. Plant production Genetic analysis Genetic diversity Genetics and breeding of economic plants Genotype & phenotype Genotype-environment interactions Genotypes Grain Grains Growing season Growing seasons Hostages Life Sciences Monsoons Oryza sativa Phosphate Phosphates Plant biology Plant Physiology Plant Sciences Plants Principal components analysis Regular Article Rice Soil Soil acidity Soil pH Soil pollution Soil Science & Conservation Soil sciences Soil water Soil-plant relationships. Soil fertility Soil-plant relationships. Soil fertility. Fertilization. Amendments Subpopulations winter |
| title | Genotype and environment effects on rice (Oryza sativa L.) grain arsenic concentration in Bangladesh |
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