online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)

Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and a...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:The New phytologist 2010-10, Vol.188 (1), p.223-241
Hauptverfasser: Öpik, M., Vanatoa, A., Vanatoa, E., Moora, M., Davison, J., Kalwij, J. M., Reier, Ü., Zobel, M.
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 241
container_issue 1
container_start_page 223
container_title The New phytologist
container_volume 188
creator Öpik, M.
Vanatoa, A.
Vanatoa, E.
Moora, M.
Davison, J.
Kalwij, J. M.
Reier, Ü.
Zobel, M.
description Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and available metadata were collated from all suitable taxonomic and ecological publications. These data have been made accessible in an open-access database ( http://maarjam.botany.ut.ee). Two hundred and eighty-two SSU rRNA gene virtual taxa (VT) were described based on a comprehensive phylogenetic analysis of all collated Glomeromycota sequences. Two-thirds of VT showed limited distribution ranges, occurring in single current or historic continents or climatic zones. Those VT that associated with a taxonomically wide range of host plants also tended to have a wide geographical distribution, and vice versa. No relationships were detected between VT richness and latitude, elevation or vascular plant richness. The collated Glomeromycota molecular diversity data suggest limited distribution ranges in most Glomeromycota taxa and a positive relationship between the width of a taxon's geographical range and its host taxonomic range. Inconsistencies between molecular and traditional taxonomy of Glomeromycota, and shortage of data from major continents and ecosystems, are highlighted.
doi_str_mv 10.1111/j.1469-8137.2010.03334.x
format Article
fullrecord <record><control><sourceid>jstor_proqu</sourceid><recordid>TN_cdi_proquest_miscellaneous_815536270</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><jstor_id>40856395</jstor_id><sourcerecordid>40856395</sourcerecordid><originalsourceid>FETCH-LOGICAL-f4904-48052a5e0e918fbff5b292bc98ea11bf69775c26cc53ed1e8bf5419b348216183</originalsourceid><addsrcrecordid>eNqNkc1u1DAURi0EokPhEQDvKIsMvv6Ls2BRVaVFagEJKrGzbMcZHCXx1E6gg3h4EqbMFryx5e9815YOQhjIGub1pl0Dl1WhgJVrSuZbwhjj67sHaHUIHqIVIVQVksuvR-hJzi0hpBKSPkZHlAgJlJQr9CsOXRg8rs1orMkeXxuT2tNrnPx3b7qMN120psNmqLF3Me_y6PvgcB3ymIKdxhAHvDXj6NOQcRiwSXbKbupMwv3OxZS-hZ9zv5mGTcAnF13sfYpLMprXT9GjZn7DP7vfj9HNu_MvZ5fF1ceL92enV0XDK8ILroigRnjiK1CNbRphaUWtq5Q3ALaRVVkKR6VzgvkavLKN4FBZxhUFCYodo1f7udsUbyefR92H7HzXmcHHKWsFQjBJS_KfJFDxT7IUAhQXJZ_JF_fkZHtf620KvUk7_VfCDLzdAz9C53eHHIheZOtWL0714lQvsvUf2fpOf_h0uZzm_vN9v81jTIc-J0pIVi1ffbnPGxO12aSQ9c3neRIjoBRnAOw3kpSxLA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>755184574</pqid></control><display><type>article</type><title>online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)</title><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Jstor Complete Legacy</source><source>Wiley Free Content</source><source>IngentaConnect Free/Open Access Journals</source><creator>Öpik, M. ; Vanatoa, A. ; Vanatoa, E. ; Moora, M. ; Davison, J. ; Kalwij, J. M. ; Reier, Ü. ; Zobel, M.</creator><creatorcontrib>Öpik, M. ; Vanatoa, A. ; Vanatoa, E. ; Moora, M. ; Davison, J. ; Kalwij, J. M. ; Reier, Ü. ; Zobel, M.</creatorcontrib><description>Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and available metadata were collated from all suitable taxonomic and ecological publications. These data have been made accessible in an open-access database ( http://maarjam.botany.ut.ee). Two hundred and eighty-two SSU rRNA gene virtual taxa (VT) were described based on a comprehensive phylogenetic analysis of all collated Glomeromycota sequences. Two-thirds of VT showed limited distribution ranges, occurring in single current or historic continents or climatic zones. Those VT that associated with a taxonomically wide range of host plants also tended to have a wide geographical distribution, and vice versa. No relationships were detected between VT richness and latitude, elevation or vascular plant richness. The collated Glomeromycota molecular diversity data suggest limited distribution ranges in most Glomeromycota taxa and a positive relationship between the width of a taxon's geographical range and its host taxonomic range. Inconsistencies between molecular and traditional taxonomy of Glomeromycota, and shortage of data from major continents and ecosystems, are highlighted.</description><identifier>ISSN: 0028-646X</identifier><identifier>EISSN: 1469-8137</identifier><identifier>DOI: 10.1111/j.1469-8137.2010.03334.x</identifier><identifier>PMID: 20561207</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>arbuscular mycorrhizal (AM) fungi ; Biological taxonomies ; Biomes ; Cluster Analysis ; Databases, Genetic ; distribution ; diversity ; Ecosystem ; Ecosystems ; Forest ecosystems ; Fungi ; Geography ; global ; Glomeromycota ; Glomeromycota - classification ; Glomeromycota - genetics ; host range ; Internet ; metadata ; Mycorrhizae - classification ; Mycorrhizae - genetics ; Mycorrhizal fungi ; Phylogeny ; Plants ; Ribosome Subunits, Small - genetics ; sequence database ; SSU rDNA ; Taxa</subject><ispartof>The New phytologist, 2010-10, Vol.188 (1), p.223-241</ispartof><rights>2010 New Phytologist Trust</rights><rights>The Authors (2010). Journal compilation © New Phytologist Trust (2010)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/40856395$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/40856395$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,777,781,800,1412,1428,27905,27906,45555,45556,46390,46814,57998,58231</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20561207$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Öpik, M.</creatorcontrib><creatorcontrib>Vanatoa, A.</creatorcontrib><creatorcontrib>Vanatoa, E.</creatorcontrib><creatorcontrib>Moora, M.</creatorcontrib><creatorcontrib>Davison, J.</creatorcontrib><creatorcontrib>Kalwij, J. M.</creatorcontrib><creatorcontrib>Reier, Ü.</creatorcontrib><creatorcontrib>Zobel, M.</creatorcontrib><title>online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)</title><title>The New phytologist</title><addtitle>New Phytol</addtitle><description>Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and available metadata were collated from all suitable taxonomic and ecological publications. These data have been made accessible in an open-access database ( http://maarjam.botany.ut.ee). Two hundred and eighty-two SSU rRNA gene virtual taxa (VT) were described based on a comprehensive phylogenetic analysis of all collated Glomeromycota sequences. Two-thirds of VT showed limited distribution ranges, occurring in single current or historic continents or climatic zones. Those VT that associated with a taxonomically wide range of host plants also tended to have a wide geographical distribution, and vice versa. No relationships were detected between VT richness and latitude, elevation or vascular plant richness. The collated Glomeromycota molecular diversity data suggest limited distribution ranges in most Glomeromycota taxa and a positive relationship between the width of a taxon's geographical range and its host taxonomic range. Inconsistencies between molecular and traditional taxonomy of Glomeromycota, and shortage of data from major continents and ecosystems, are highlighted.</description><subject>arbuscular mycorrhizal (AM) fungi</subject><subject>Biological taxonomies</subject><subject>Biomes</subject><subject>Cluster Analysis</subject><subject>Databases, Genetic</subject><subject>distribution</subject><subject>diversity</subject><subject>Ecosystem</subject><subject>Ecosystems</subject><subject>Forest ecosystems</subject><subject>Fungi</subject><subject>Geography</subject><subject>global</subject><subject>Glomeromycota</subject><subject>Glomeromycota - classification</subject><subject>Glomeromycota - genetics</subject><subject>host range</subject><subject>Internet</subject><subject>metadata</subject><subject>Mycorrhizae - classification</subject><subject>Mycorrhizae - genetics</subject><subject>Mycorrhizal fungi</subject><subject>Phylogeny</subject><subject>Plants</subject><subject>Ribosome Subunits, Small - genetics</subject><subject>sequence database</subject><subject>SSU rDNA</subject><subject>Taxa</subject><issn>0028-646X</issn><issn>1469-8137</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkc1u1DAURi0EokPhEQDvKIsMvv6Ls2BRVaVFagEJKrGzbMcZHCXx1E6gg3h4EqbMFryx5e9815YOQhjIGub1pl0Dl1WhgJVrSuZbwhjj67sHaHUIHqIVIVQVksuvR-hJzi0hpBKSPkZHlAgJlJQr9CsOXRg8rs1orMkeXxuT2tNrnPx3b7qMN120psNmqLF3Me_y6PvgcB3ymIKdxhAHvDXj6NOQcRiwSXbKbupMwv3OxZS-hZ9zv5mGTcAnF13sfYpLMprXT9GjZn7DP7vfj9HNu_MvZ5fF1ceL92enV0XDK8ILroigRnjiK1CNbRphaUWtq5Q3ALaRVVkKR6VzgvkavLKN4FBZxhUFCYodo1f7udsUbyefR92H7HzXmcHHKWsFQjBJS_KfJFDxT7IUAhQXJZ_JF_fkZHtf620KvUk7_VfCDLzdAz9C53eHHIheZOtWL0714lQvsvUf2fpOf_h0uZzm_vN9v81jTIc-J0pIVi1ffbnPGxO12aSQ9c3neRIjoBRnAOw3kpSxLA</recordid><startdate>201010</startdate><enddate>201010</enddate><creator>Öpik, M.</creator><creator>Vanatoa, A.</creator><creator>Vanatoa, E.</creator><creator>Moora, M.</creator><creator>Davison, J.</creator><creator>Kalwij, J. M.</creator><creator>Reier, Ü.</creator><creator>Zobel, M.</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing</general><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>7SN</scope><scope>C1K</scope><scope>M7N</scope></search><sort><creationdate>201010</creationdate><title>online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)</title><author>Öpik, M. ; Vanatoa, A. ; Vanatoa, E. ; Moora, M. ; Davison, J. ; Kalwij, J. M. ; Reier, Ü. ; Zobel, M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-f4904-48052a5e0e918fbff5b292bc98ea11bf69775c26cc53ed1e8bf5419b348216183</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>arbuscular mycorrhizal (AM) fungi</topic><topic>Biological taxonomies</topic><topic>Biomes</topic><topic>Cluster Analysis</topic><topic>Databases, Genetic</topic><topic>distribution</topic><topic>diversity</topic><topic>Ecosystem</topic><topic>Ecosystems</topic><topic>Forest ecosystems</topic><topic>Fungi</topic><topic>Geography</topic><topic>global</topic><topic>Glomeromycota</topic><topic>Glomeromycota - classification</topic><topic>Glomeromycota - genetics</topic><topic>host range</topic><topic>Internet</topic><topic>metadata</topic><topic>Mycorrhizae - classification</topic><topic>Mycorrhizae - genetics</topic><topic>Mycorrhizal fungi</topic><topic>Phylogeny</topic><topic>Plants</topic><topic>Ribosome Subunits, Small - genetics</topic><topic>sequence database</topic><topic>SSU rDNA</topic><topic>Taxa</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Öpik, M.</creatorcontrib><creatorcontrib>Vanatoa, A.</creatorcontrib><creatorcontrib>Vanatoa, E.</creatorcontrib><creatorcontrib>Moora, M.</creatorcontrib><creatorcontrib>Davison, J.</creatorcontrib><creatorcontrib>Kalwij, J. M.</creatorcontrib><creatorcontrib>Reier, Ü.</creatorcontrib><creatorcontrib>Zobel, M.</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Ecology Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><jtitle>The New phytologist</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Öpik, M.</au><au>Vanatoa, A.</au><au>Vanatoa, E.</au><au>Moora, M.</au><au>Davison, J.</au><au>Kalwij, J. M.</au><au>Reier, Ü.</au><au>Zobel, M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)</atitle><jtitle>The New phytologist</jtitle><addtitle>New Phytol</addtitle><date>2010-10</date><risdate>2010</risdate><volume>188</volume><issue>1</issue><spage>223</spage><epage>241</epage><pages>223-241</pages><issn>0028-646X</issn><eissn>1469-8137</eissn><abstract>Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and available metadata were collated from all suitable taxonomic and ecological publications. These data have been made accessible in an open-access database ( http://maarjam.botany.ut.ee). Two hundred and eighty-two SSU rRNA gene virtual taxa (VT) were described based on a comprehensive phylogenetic analysis of all collated Glomeromycota sequences. Two-thirds of VT showed limited distribution ranges, occurring in single current or historic continents or climatic zones. Those VT that associated with a taxonomically wide range of host plants also tended to have a wide geographical distribution, and vice versa. No relationships were detected between VT richness and latitude, elevation or vascular plant richness. The collated Glomeromycota molecular diversity data suggest limited distribution ranges in most Glomeromycota taxa and a positive relationship between the width of a taxon's geographical range and its host taxonomic range. Inconsistencies between molecular and traditional taxonomy of Glomeromycota, and shortage of data from major continents and ecosystems, are highlighted.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>20561207</pmid><doi>10.1111/j.1469-8137.2010.03334.x</doi><tpages>19</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0028-646X
ispartof The New phytologist, 2010-10, Vol.188 (1), p.223-241
issn 0028-646X
1469-8137
language eng
recordid cdi_proquest_miscellaneous_815536270
source MEDLINE; Wiley Online Library Journals Frontfile Complete; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Jstor Complete Legacy; Wiley Free Content; IngentaConnect Free/Open Access Journals
subjects arbuscular mycorrhizal (AM) fungi
Biological taxonomies
Biomes
Cluster Analysis
Databases, Genetic
distribution
diversity
Ecosystem
Ecosystems
Forest ecosystems
Fungi
Geography
global
Glomeromycota
Glomeromycota - classification
Glomeromycota - genetics
host range
Internet
metadata
Mycorrhizae - classification
Mycorrhizae - genetics
Mycorrhizal fungi
Phylogeny
Plants
Ribosome Subunits, Small - genetics
sequence database
SSU rDNA
Taxa
title online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-19T14%3A52%3A38IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-jstor_proqu&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=online%20database%20MaarjAM%20reveals%20global%20and%20ecosystemic%20distribution%20patterns%20in%20arbuscular%20mycorrhizal%20fungi%20(Glomeromycota)&rft.jtitle=The%20New%20phytologist&rft.au=%C3%96pik,%20M.&rft.date=2010-10&rft.volume=188&rft.issue=1&rft.spage=223&rft.epage=241&rft.pages=223-241&rft.issn=0028-646X&rft.eissn=1469-8137&rft_id=info:doi/10.1111/j.1469-8137.2010.03334.x&rft_dat=%3Cjstor_proqu%3E40856395%3C/jstor_proqu%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=755184574&rft_id=info:pmid/20561207&rft_jstor_id=40856395&rfr_iscdi=true