online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and a...
Gespeichert in:
Veröffentlicht in: | The New phytologist 2010-10, Vol.188 (1), p.223-241 |
---|---|
Hauptverfasser: | , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 241 |
---|---|
container_issue | 1 |
container_start_page | 223 |
container_title | The New phytologist |
container_volume | 188 |
creator | Öpik, M. Vanatoa, A. Vanatoa, E. Moora, M. Davison, J. Kalwij, J. M. Reier, Ü. Zobel, M. |
description | Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and available metadata were collated from all suitable taxonomic and ecological publications. These data have been made accessible in an open-access database ( http://maarjam.botany.ut.ee). Two hundred and eighty-two SSU rRNA gene virtual taxa (VT) were described based on a comprehensive phylogenetic analysis of all collated Glomeromycota sequences. Two-thirds of VT showed limited distribution ranges, occurring in single current or historic continents or climatic zones. Those VT that associated with a taxonomically wide range of host plants also tended to have a wide geographical distribution, and vice versa. No relationships were detected between VT richness and latitude, elevation or vascular plant richness. The collated Glomeromycota molecular diversity data suggest limited distribution ranges in most Glomeromycota taxa and a positive relationship between the width of a taxon's geographical range and its host taxonomic range. Inconsistencies between molecular and traditional taxonomy of Glomeromycota, and shortage of data from major continents and ecosystems, are highlighted. |
doi_str_mv | 10.1111/j.1469-8137.2010.03334.x |
format | Article |
fullrecord | <record><control><sourceid>jstor_proqu</sourceid><recordid>TN_cdi_proquest_miscellaneous_815536270</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><jstor_id>40856395</jstor_id><sourcerecordid>40856395</sourcerecordid><originalsourceid>FETCH-LOGICAL-f4904-48052a5e0e918fbff5b292bc98ea11bf69775c26cc53ed1e8bf5419b348216183</originalsourceid><addsrcrecordid>eNqNkc1u1DAURi0EokPhEQDvKIsMvv6Ls2BRVaVFagEJKrGzbMcZHCXx1E6gg3h4EqbMFryx5e9815YOQhjIGub1pl0Dl1WhgJVrSuZbwhjj67sHaHUIHqIVIVQVksuvR-hJzi0hpBKSPkZHlAgJlJQr9CsOXRg8rs1orMkeXxuT2tNrnPx3b7qMN120psNmqLF3Me_y6PvgcB3ymIKdxhAHvDXj6NOQcRiwSXbKbupMwv3OxZS-hZ9zv5mGTcAnF13sfYpLMprXT9GjZn7DP7vfj9HNu_MvZ5fF1ceL92enV0XDK8ILroigRnjiK1CNbRphaUWtq5Q3ALaRVVkKR6VzgvkavLKN4FBZxhUFCYodo1f7udsUbyefR92H7HzXmcHHKWsFQjBJS_KfJFDxT7IUAhQXJZ_JF_fkZHtf620KvUk7_VfCDLzdAz9C53eHHIheZOtWL0714lQvsvUf2fpOf_h0uZzm_vN9v81jTIc-J0pIVi1ffbnPGxO12aSQ9c3neRIjoBRnAOw3kpSxLA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>755184574</pqid></control><display><type>article</type><title>online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)</title><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Jstor Complete Legacy</source><source>Wiley Free Content</source><source>IngentaConnect Free/Open Access Journals</source><creator>Öpik, M. ; Vanatoa, A. ; Vanatoa, E. ; Moora, M. ; Davison, J. ; Kalwij, J. M. ; Reier, Ü. ; Zobel, M.</creator><creatorcontrib>Öpik, M. ; Vanatoa, A. ; Vanatoa, E. ; Moora, M. ; Davison, J. ; Kalwij, J. M. ; Reier, Ü. ; Zobel, M.</creatorcontrib><description>Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and available metadata were collated from all suitable taxonomic and ecological publications. These data have been made accessible in an open-access database ( http://maarjam.botany.ut.ee). Two hundred and eighty-two SSU rRNA gene virtual taxa (VT) were described based on a comprehensive phylogenetic analysis of all collated Glomeromycota sequences. Two-thirds of VT showed limited distribution ranges, occurring in single current or historic continents or climatic zones. Those VT that associated with a taxonomically wide range of host plants also tended to have a wide geographical distribution, and vice versa. No relationships were detected between VT richness and latitude, elevation or vascular plant richness. The collated Glomeromycota molecular diversity data suggest limited distribution ranges in most Glomeromycota taxa and a positive relationship between the width of a taxon's geographical range and its host taxonomic range. Inconsistencies between molecular and traditional taxonomy of Glomeromycota, and shortage of data from major continents and ecosystems, are highlighted.</description><identifier>ISSN: 0028-646X</identifier><identifier>EISSN: 1469-8137</identifier><identifier>DOI: 10.1111/j.1469-8137.2010.03334.x</identifier><identifier>PMID: 20561207</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>arbuscular mycorrhizal (AM) fungi ; Biological taxonomies ; Biomes ; Cluster Analysis ; Databases, Genetic ; distribution ; diversity ; Ecosystem ; Ecosystems ; Forest ecosystems ; Fungi ; Geography ; global ; Glomeromycota ; Glomeromycota - classification ; Glomeromycota - genetics ; host range ; Internet ; metadata ; Mycorrhizae - classification ; Mycorrhizae - genetics ; Mycorrhizal fungi ; Phylogeny ; Plants ; Ribosome Subunits, Small - genetics ; sequence database ; SSU rDNA ; Taxa</subject><ispartof>The New phytologist, 2010-10, Vol.188 (1), p.223-241</ispartof><rights>2010 New Phytologist Trust</rights><rights>The Authors (2010). Journal compilation © New Phytologist Trust (2010)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/40856395$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/40856395$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,777,781,800,1412,1428,27905,27906,45555,45556,46390,46814,57998,58231</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20561207$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Öpik, M.</creatorcontrib><creatorcontrib>Vanatoa, A.</creatorcontrib><creatorcontrib>Vanatoa, E.</creatorcontrib><creatorcontrib>Moora, M.</creatorcontrib><creatorcontrib>Davison, J.</creatorcontrib><creatorcontrib>Kalwij, J. M.</creatorcontrib><creatorcontrib>Reier, Ü.</creatorcontrib><creatorcontrib>Zobel, M.</creatorcontrib><title>online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)</title><title>The New phytologist</title><addtitle>New Phytol</addtitle><description>Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and available metadata were collated from all suitable taxonomic and ecological publications. These data have been made accessible in an open-access database ( http://maarjam.botany.ut.ee). Two hundred and eighty-two SSU rRNA gene virtual taxa (VT) were described based on a comprehensive phylogenetic analysis of all collated Glomeromycota sequences. Two-thirds of VT showed limited distribution ranges, occurring in single current or historic continents or climatic zones. Those VT that associated with a taxonomically wide range of host plants also tended to have a wide geographical distribution, and vice versa. No relationships were detected between VT richness and latitude, elevation or vascular plant richness. The collated Glomeromycota molecular diversity data suggest limited distribution ranges in most Glomeromycota taxa and a positive relationship between the width of a taxon's geographical range and its host taxonomic range. Inconsistencies between molecular and traditional taxonomy of Glomeromycota, and shortage of data from major continents and ecosystems, are highlighted.</description><subject>arbuscular mycorrhizal (AM) fungi</subject><subject>Biological taxonomies</subject><subject>Biomes</subject><subject>Cluster Analysis</subject><subject>Databases, Genetic</subject><subject>distribution</subject><subject>diversity</subject><subject>Ecosystem</subject><subject>Ecosystems</subject><subject>Forest ecosystems</subject><subject>Fungi</subject><subject>Geography</subject><subject>global</subject><subject>Glomeromycota</subject><subject>Glomeromycota - classification</subject><subject>Glomeromycota - genetics</subject><subject>host range</subject><subject>Internet</subject><subject>metadata</subject><subject>Mycorrhizae - classification</subject><subject>Mycorrhizae - genetics</subject><subject>Mycorrhizal fungi</subject><subject>Phylogeny</subject><subject>Plants</subject><subject>Ribosome Subunits, Small - genetics</subject><subject>sequence database</subject><subject>SSU rDNA</subject><subject>Taxa</subject><issn>0028-646X</issn><issn>1469-8137</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkc1u1DAURi0EokPhEQDvKIsMvv6Ls2BRVaVFagEJKrGzbMcZHCXx1E6gg3h4EqbMFryx5e9815YOQhjIGub1pl0Dl1WhgJVrSuZbwhjj67sHaHUIHqIVIVQVksuvR-hJzi0hpBKSPkZHlAgJlJQr9CsOXRg8rs1orMkeXxuT2tNrnPx3b7qMN120psNmqLF3Me_y6PvgcB3ymIKdxhAHvDXj6NOQcRiwSXbKbupMwv3OxZS-hZ9zv5mGTcAnF13sfYpLMprXT9GjZn7DP7vfj9HNu_MvZ5fF1ceL92enV0XDK8ILroigRnjiK1CNbRphaUWtq5Q3ALaRVVkKR6VzgvkavLKN4FBZxhUFCYodo1f7udsUbyefR92H7HzXmcHHKWsFQjBJS_KfJFDxT7IUAhQXJZ_JF_fkZHtf620KvUk7_VfCDLzdAz9C53eHHIheZOtWL0714lQvsvUf2fpOf_h0uZzm_vN9v81jTIc-J0pIVi1ffbnPGxO12aSQ9c3neRIjoBRnAOw3kpSxLA</recordid><startdate>201010</startdate><enddate>201010</enddate><creator>Öpik, M.</creator><creator>Vanatoa, A.</creator><creator>Vanatoa, E.</creator><creator>Moora, M.</creator><creator>Davison, J.</creator><creator>Kalwij, J. M.</creator><creator>Reier, Ü.</creator><creator>Zobel, M.</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing</general><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>7SN</scope><scope>C1K</scope><scope>M7N</scope></search><sort><creationdate>201010</creationdate><title>online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)</title><author>Öpik, M. ; Vanatoa, A. ; Vanatoa, E. ; Moora, M. ; Davison, J. ; Kalwij, J. M. ; Reier, Ü. ; Zobel, M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-f4904-48052a5e0e918fbff5b292bc98ea11bf69775c26cc53ed1e8bf5419b348216183</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>arbuscular mycorrhizal (AM) fungi</topic><topic>Biological taxonomies</topic><topic>Biomes</topic><topic>Cluster Analysis</topic><topic>Databases, Genetic</topic><topic>distribution</topic><topic>diversity</topic><topic>Ecosystem</topic><topic>Ecosystems</topic><topic>Forest ecosystems</topic><topic>Fungi</topic><topic>Geography</topic><topic>global</topic><topic>Glomeromycota</topic><topic>Glomeromycota - classification</topic><topic>Glomeromycota - genetics</topic><topic>host range</topic><topic>Internet</topic><topic>metadata</topic><topic>Mycorrhizae - classification</topic><topic>Mycorrhizae - genetics</topic><topic>Mycorrhizal fungi</topic><topic>Phylogeny</topic><topic>Plants</topic><topic>Ribosome Subunits, Small - genetics</topic><topic>sequence database</topic><topic>SSU rDNA</topic><topic>Taxa</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Öpik, M.</creatorcontrib><creatorcontrib>Vanatoa, A.</creatorcontrib><creatorcontrib>Vanatoa, E.</creatorcontrib><creatorcontrib>Moora, M.</creatorcontrib><creatorcontrib>Davison, J.</creatorcontrib><creatorcontrib>Kalwij, J. M.</creatorcontrib><creatorcontrib>Reier, Ü.</creatorcontrib><creatorcontrib>Zobel, M.</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Ecology Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><jtitle>The New phytologist</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Öpik, M.</au><au>Vanatoa, A.</au><au>Vanatoa, E.</au><au>Moora, M.</au><au>Davison, J.</au><au>Kalwij, J. M.</au><au>Reier, Ü.</au><au>Zobel, M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)</atitle><jtitle>The New phytologist</jtitle><addtitle>New Phytol</addtitle><date>2010-10</date><risdate>2010</risdate><volume>188</volume><issue>1</issue><spage>223</spage><epage>241</epage><pages>223-241</pages><issn>0028-646X</issn><eissn>1469-8137</eissn><abstract>Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. Small subunit (SSU) rRNA gene sequences and available metadata were collated from all suitable taxonomic and ecological publications. These data have been made accessible in an open-access database ( http://maarjam.botany.ut.ee). Two hundred and eighty-two SSU rRNA gene virtual taxa (VT) were described based on a comprehensive phylogenetic analysis of all collated Glomeromycota sequences. Two-thirds of VT showed limited distribution ranges, occurring in single current or historic continents or climatic zones. Those VT that associated with a taxonomically wide range of host plants also tended to have a wide geographical distribution, and vice versa. No relationships were detected between VT richness and latitude, elevation or vascular plant richness. The collated Glomeromycota molecular diversity data suggest limited distribution ranges in most Glomeromycota taxa and a positive relationship between the width of a taxon's geographical range and its host taxonomic range. Inconsistencies between molecular and traditional taxonomy of Glomeromycota, and shortage of data from major continents and ecosystems, are highlighted.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>20561207</pmid><doi>10.1111/j.1469-8137.2010.03334.x</doi><tpages>19</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0028-646X |
ispartof | The New phytologist, 2010-10, Vol.188 (1), p.223-241 |
issn | 0028-646X 1469-8137 |
language | eng |
recordid | cdi_proquest_miscellaneous_815536270 |
source | MEDLINE; Wiley Online Library Journals Frontfile Complete; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Jstor Complete Legacy; Wiley Free Content; IngentaConnect Free/Open Access Journals |
subjects | arbuscular mycorrhizal (AM) fungi Biological taxonomies Biomes Cluster Analysis Databases, Genetic distribution diversity Ecosystem Ecosystems Forest ecosystems Fungi Geography global Glomeromycota Glomeromycota - classification Glomeromycota - genetics host range Internet metadata Mycorrhizae - classification Mycorrhizae - genetics Mycorrhizal fungi Phylogeny Plants Ribosome Subunits, Small - genetics sequence database SSU rDNA Taxa |
title | online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota) |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-19T14%3A52%3A38IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-jstor_proqu&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=online%20database%20MaarjAM%20reveals%20global%20and%20ecosystemic%20distribution%20patterns%20in%20arbuscular%20mycorrhizal%20fungi%20(Glomeromycota)&rft.jtitle=The%20New%20phytologist&rft.au=%C3%96pik,%20M.&rft.date=2010-10&rft.volume=188&rft.issue=1&rft.spage=223&rft.epage=241&rft.pages=223-241&rft.issn=0028-646X&rft.eissn=1469-8137&rft_id=info:doi/10.1111/j.1469-8137.2010.03334.x&rft_dat=%3Cjstor_proqu%3E40856395%3C/jstor_proqu%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=755184574&rft_id=info:pmid/20561207&rft_jstor_id=40856395&rfr_iscdi=true |