Selective isolation and characterisation of members of the Streptomyces violaceusniger clade associated with the roots of Paraserianthes falcataria
Large numbers of putatively novel streptomycetes were isolated from environmental samples collected from in and around the root system of the tropical angiosperm, Paraserianthes falcataria. Representative isolates were assigned to 37 multi-membered and 107 single membered colour groups based on thei...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2000-12, Vol.78 (3-4), p.353-366 |
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| creator | Sembiring, L Ward, A C Goodfellow, M |
| description | Large numbers of putatively novel streptomycetes were isolated from environmental samples collected from in and around the root system of the tropical angiosperm, Paraserianthes falcataria. Representative isolates were assigned to 37 multi-membered and 107 single membered colour groups based on their ability to form pigments on oatmeal and peptone yeast extract iron agars. The largest taxon, colour group 3, encompassed 94 isolates which had morphological properties typical of members of the Streptomyces violaceusniger clade. Twelve representatives of this taxon chosen on the basis of Curie-point pyrolysis mass spectrometric data were compared with representatives of the validly described species which constitute the Streptomyces violaceusniger clade. Six out of the twelve representative strains were readily distinguished from one another and from the marker strains using a combination of genotypic and phenotypic properties. These organisms were consequently considered to merit species status as Streptomyces asiaticus sp. nov., Streptomyces cangkringensis sp. nov., Streptomyces indonesiensis sp. nov., Streptomycesjavensis sp. nov., Streptomyces rhizosphaerius sp. nov. and Streptomyces yogyakartensis sp. nov. |
| doi_str_mv | 10.1023/A:1010226515202 |
| format | Article |
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Representative isolates were assigned to 37 multi-membered and 107 single membered colour groups based on their ability to form pigments on oatmeal and peptone yeast extract iron agars. The largest taxon, colour group 3, encompassed 94 isolates which had morphological properties typical of members of the Streptomyces violaceusniger clade. Twelve representatives of this taxon chosen on the basis of Curie-point pyrolysis mass spectrometric data were compared with representatives of the validly described species which constitute the Streptomyces violaceusniger clade. Six out of the twelve representative strains were readily distinguished from one another and from the marker strains using a combination of genotypic and phenotypic properties. These organisms were consequently considered to merit species status as Streptomyces asiaticus sp. nov., Streptomyces cangkringensis sp. nov., Streptomyces indonesiensis sp. nov., Streptomycesjavensis sp. nov., Streptomyces rhizosphaerius sp. nov. and Streptomyces yogyakartensis sp. nov.</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1023/A:1010226515202</identifier><identifier>PMID: 11386358</identifier><language>eng</language><publisher>Netherlands: Springer Nature B.V</publisher><subject>Agar ; Angiosperms ; Bacteria ; Bacteriological Techniques - methods ; Culture Media ; Data processing ; Iron ; Magnoliopsida - microbiology ; Microbiology ; Molecular Sequence Data ; New species ; Paraserianthes falcataria ; peptone ; Peptones ; Phylogeny ; Pigments ; Plant Roots - microbiology ; Pyrolysis ; Roots ; Soil Microbiology ; Spores, Bacterial ; Streptomyces ; Streptomyces - classification ; Streptomyces - genetics ; Streptomyces - isolation & purification ; Streptomyces - physiology ; Streptomyces cangkringensis ; Streptomyces indonesiensis ; Streptomyces javensis ; Streptomyces rhizosphaerius ; Streptomyces violaceusniger ; Streptomyces yogyakartensis ; Streptomycetes ; Taxa ; Tropical Climate ; Yeasts</subject><ispartof>Antonie van Leeuwenhoek, 2000-12, Vol.78 (3-4), p.353-366</ispartof><rights>Kluwer Academic Publishers 2000</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c343t-f843d18a9dde195eb958ab6db0fcdef283d56dabe37f61db671d5474079a89b3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11386358$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sembiring, L</creatorcontrib><creatorcontrib>Ward, A C</creatorcontrib><creatorcontrib>Goodfellow, M</creatorcontrib><title>Selective isolation and characterisation of members of the Streptomyces violaceusniger clade associated with the roots of Paraserianthes falcataria</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie Van Leeuwenhoek</addtitle><description>Large numbers of putatively novel streptomycetes were isolated from environmental samples collected from in and around the root system of the tropical angiosperm, Paraserianthes falcataria. Representative isolates were assigned to 37 multi-membered and 107 single membered colour groups based on their ability to form pigments on oatmeal and peptone yeast extract iron agars. The largest taxon, colour group 3, encompassed 94 isolates which had morphological properties typical of members of the Streptomyces violaceusniger clade. Twelve representatives of this taxon chosen on the basis of Curie-point pyrolysis mass spectrometric data were compared with representatives of the validly described species which constitute the Streptomyces violaceusniger clade. Six out of the twelve representative strains were readily distinguished from one another and from the marker strains using a combination of genotypic and phenotypic properties. These organisms were consequently considered to merit species status as Streptomyces asiaticus sp. nov., Streptomyces cangkringensis sp. nov., Streptomyces indonesiensis sp. nov., Streptomycesjavensis sp. nov., Streptomyces rhizosphaerius sp. nov. and Streptomyces yogyakartensis sp. nov.</description><subject>Agar</subject><subject>Angiosperms</subject><subject>Bacteria</subject><subject>Bacteriological Techniques - methods</subject><subject>Culture Media</subject><subject>Data processing</subject><subject>Iron</subject><subject>Magnoliopsida - microbiology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>New species</subject><subject>Paraserianthes falcataria</subject><subject>peptone</subject><subject>Peptones</subject><subject>Phylogeny</subject><subject>Pigments</subject><subject>Plant Roots - microbiology</subject><subject>Pyrolysis</subject><subject>Roots</subject><subject>Soil Microbiology</subject><subject>Spores, Bacterial</subject><subject>Streptomyces</subject><subject>Streptomyces - classification</subject><subject>Streptomyces - genetics</subject><subject>Streptomyces - isolation & purification</subject><subject>Streptomyces - physiology</subject><subject>Streptomyces cangkringensis</subject><subject>Streptomyces indonesiensis</subject><subject>Streptomyces javensis</subject><subject>Streptomyces rhizosphaerius</subject><subject>Streptomyces violaceusniger</subject><subject>Streptomyces yogyakartensis</subject><subject>Streptomycetes</subject><subject>Taxa</subject><subject>Tropical Climate</subject><subject>Yeasts</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkctuFTEMhiMEoofCmh2KWMBqIJfJjV1VcZMqgdTuR57Ew0k1MzkkmVZ9Dl6Y9MKGBazs3_r8W7YJecnZO86EfH_ygbOWCK24Ekw8IjuujOicdu4x2THGZKeZEUfkWSmXTTptzVNyxLm0Wiq7I7_OcUZf4xXSWNIMNaaVwhqo30MGXzHHcl9ME11wGTGX27TukZ7XjIealhuPhV7F1u1xK2v8gZn6GQJSKCX5CBUDvY51f9eVU6p3Ft_bgNL8YW3lQieYPVRo-jl50kTBFw_xmFx8-nhx-qU7-_b56-nJWedlL2s32V4GbsGFgNwpHJ2yMOowsskHnISVQekAI0ozaR5GbXhQvemZcWDdKI_J23vbQ04_Nyx1WGLxOM-wYtrKYNvhjFNKNfLNP0kjlLVC2v-C3Ni-75lu4Ou_wMu05bVtOxgllRNK3kKvHqBtXDAMhxwXyDfDn-_J34jcn3Y</recordid><startdate>20001201</startdate><enddate>20001201</enddate><creator>Sembiring, L</creator><creator>Ward, A C</creator><creator>Goodfellow, M</creator><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>20001201</creationdate><title>Selective isolation and characterisation of members of the Streptomyces violaceusniger clade associated with the roots of Paraserianthes falcataria</title><author>Sembiring, L ; Ward, A C ; Goodfellow, M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c343t-f843d18a9dde195eb958ab6db0fcdef283d56dabe37f61db671d5474079a89b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>Agar</topic><topic>Angiosperms</topic><topic>Bacteria</topic><topic>Bacteriological Techniques - methods</topic><topic>Culture Media</topic><topic>Data processing</topic><topic>Iron</topic><topic>Magnoliopsida - microbiology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>New species</topic><topic>Paraserianthes falcataria</topic><topic>peptone</topic><topic>Peptones</topic><topic>Phylogeny</topic><topic>Pigments</topic><topic>Plant Roots - microbiology</topic><topic>Pyrolysis</topic><topic>Roots</topic><topic>Soil Microbiology</topic><topic>Spores, Bacterial</topic><topic>Streptomyces</topic><topic>Streptomyces - classification</topic><topic>Streptomyces - genetics</topic><topic>Streptomyces - isolation & purification</topic><topic>Streptomyces - physiology</topic><topic>Streptomyces cangkringensis</topic><topic>Streptomyces indonesiensis</topic><topic>Streptomyces javensis</topic><topic>Streptomyces rhizosphaerius</topic><topic>Streptomyces violaceusniger</topic><topic>Streptomyces yogyakartensis</topic><topic>Streptomycetes</topic><topic>Taxa</topic><topic>Tropical Climate</topic><topic>Yeasts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sembiring, L</creatorcontrib><creatorcontrib>Ward, A C</creatorcontrib><creatorcontrib>Goodfellow, M</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sembiring, L</au><au>Ward, A C</au><au>Goodfellow, M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Selective isolation and characterisation of members of the Streptomyces violaceusniger clade associated with the roots of Paraserianthes falcataria</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2000-12-01</date><risdate>2000</risdate><volume>78</volume><issue>3-4</issue><spage>353</spage><epage>366</epage><pages>353-366</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>Large numbers of putatively novel streptomycetes were isolated from environmental samples collected from in and around the root system of the tropical angiosperm, Paraserianthes falcataria. Representative isolates were assigned to 37 multi-membered and 107 single membered colour groups based on their ability to form pigments on oatmeal and peptone yeast extract iron agars. The largest taxon, colour group 3, encompassed 94 isolates which had morphological properties typical of members of the Streptomyces violaceusniger clade. Twelve representatives of this taxon chosen on the basis of Curie-point pyrolysis mass spectrometric data were compared with representatives of the validly described species which constitute the Streptomyces violaceusniger clade. Six out of the twelve representative strains were readily distinguished from one another and from the marker strains using a combination of genotypic and phenotypic properties. These organisms were consequently considered to merit species status as Streptomyces asiaticus sp. nov., Streptomyces cangkringensis sp. nov., Streptomyces indonesiensis sp. nov., Streptomycesjavensis sp. nov., Streptomyces rhizosphaerius sp. nov. and Streptomyces yogyakartensis sp. nov.</abstract><cop>Netherlands</cop><pub>Springer Nature B.V</pub><pmid>11386358</pmid><doi>10.1023/A:1010226515202</doi><tpages>14</tpages></addata></record> |
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| ispartof | Antonie van Leeuwenhoek, 2000-12, Vol.78 (3-4), p.353-366 |
| issn | 0003-6072 1572-9699 |
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| subjects | Agar Angiosperms Bacteria Bacteriological Techniques - methods Culture Media Data processing Iron Magnoliopsida - microbiology Microbiology Molecular Sequence Data New species Paraserianthes falcataria peptone Peptones Phylogeny Pigments Plant Roots - microbiology Pyrolysis Roots Soil Microbiology Spores, Bacterial Streptomyces Streptomyces - classification Streptomyces - genetics Streptomyces - isolation & purification Streptomyces - physiology Streptomyces cangkringensis Streptomyces indonesiensis Streptomyces javensis Streptomyces rhizosphaerius Streptomyces violaceusniger Streptomyces yogyakartensis Streptomycetes Taxa Tropical Climate Yeasts |
| title | Selective isolation and characterisation of members of the Streptomyces violaceusniger clade associated with the roots of Paraserianthes falcataria |
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