Cloning and functional expression of the dps gene encoding decaprenyl diphosphate synthase from Agrobacterium tumefaciens
A newly isolated gene from Agrobacterium tumefaciens ( A. tumefaciens), which encoded a decaprenyl diphosphate synthase, was cloned in Escherichia coli ( E. coli), and its nucleotide sequence was determined. DNA sequence analysis revealed an open reading frame of 1077 bp capable of encoding a 358‐am...
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Veröffentlicht in: | Biotechnology progress 2004, Vol.20 (1), p.51-56 |
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description | A newly isolated gene from Agrobacterium tumefaciens ( A. tumefaciens), which encoded a decaprenyl diphosphate synthase, was cloned in Escherichia coli ( E. coli), and its nucleotide sequence was determined. DNA sequence analysis revealed an open reading frame of 1077 bp capable of encoding a 358‐amino‐acid protein with a calculated isoelectric point of pH 5.16 and a molecular mass of 38 960 Da. The primary structure of the enzyme shared significant homology with prenyl diphosphate synthases from various sources. The deduced amino acid sequence included oligopeptide DDxxD aspartate‐rich domains conserved in the majority of prenyl diphosphate synthases. High levels of the active enzyme were expressed in the soluble fraction and were readily purified to homogeneity by Ni‐NTA chromatography. E. coliJM109 harboring the dps gene produced ubiquinone‐10 in addition to endogenous ubiquinone‐8, while E. coli JM109 harboring the dps gene mutated on the DDxxD domain lost the ability to produce ubiquinone‐10, which suggests that the A. tumefaciens dps gene is functionally expressed in E. coli and that it encodes a decaprenyl diphosphate synthase. |
doi_str_mv | 10.1021/bp034213e |
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DNA sequence analysis revealed an open reading frame of 1077 bp capable of encoding a 358‐amino‐acid protein with a calculated isoelectric point of pH 5.16 and a molecular mass of 38 960 Da. The primary structure of the enzyme shared significant homology with prenyl diphosphate synthases from various sources. The deduced amino acid sequence included oligopeptide DDxxD aspartate‐rich domains conserved in the majority of prenyl diphosphate synthases. High levels of the active enzyme were expressed in the soluble fraction and were readily purified to homogeneity by Ni‐NTA chromatography. E. coliJM109 harboring the dps gene produced ubiquinone‐10 in addition to endogenous ubiquinone‐8, while E. coli JM109 harboring the dps gene mutated on the DDxxD domain lost the ability to produce ubiquinone‐10, which suggests that the A. tumefaciens dps gene is functionally expressed in E. coli and that it encodes a decaprenyl diphosphate synthase.</description><identifier>ISSN: 8756-7938</identifier><identifier>EISSN: 1520-6033</identifier><identifier>DOI: 10.1021/bp034213e</identifier><identifier>PMID: 14763823</identifier><identifier>CODEN: BIPRET</identifier><language>eng</language><publisher>USA: American Chemical Society</publisher><subject>Agrobacterium tumefaciens ; Agrobacterium tumefaciens - enzymology ; Agrobacterium tumefaciens - genetics ; Alkyl and Aryl Transferases - chemistry ; Alkyl and Aryl Transferases - genetics ; Alkyl and Aryl Transferases - metabolism ; Amino Acid Sequence ; Biological and medical sciences ; Biotechnology ; Cloning, Molecular - methods ; Escherichia coli - enzymology ; Escherichia coli - genetics ; Fundamental and applied biological sciences. Psychology ; Gene Expression Regulation, Bacterial - physiology ; Gene Expression Regulation, Enzymologic - physiology ; Molecular Sequence Data ; Molecular Weight ; Protein Engineering - methods ; Sequence Homology, Amino Acid</subject><ispartof>Biotechnology progress, 2004, Vol.20 (1), p.51-56</ispartof><rights>Copyright © 2004 American Institute of Chemical Engineers (AIChE)</rights><rights>2004 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5113-111cfbfc479a87427500cca4106a661a1485344f835c19de6916e453ca1dc6d43</citedby><cites>FETCH-LOGICAL-c5113-111cfbfc479a87427500cca4106a661a1485344f835c19de6916e453ca1dc6d43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1021%2Fbp034213e$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1021%2Fbp034213e$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,4010,27900,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15468482$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14763823$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lee, J.K</creatorcontrib><creatorcontrib>Her, G</creatorcontrib><creatorcontrib>Kim, S.Y</creatorcontrib><creatorcontrib>Seo, J.H</creatorcontrib><title>Cloning and functional expression of the dps gene encoding decaprenyl diphosphate synthase from Agrobacterium tumefaciens</title><title>Biotechnology progress</title><addtitle>Biotechnol Progress</addtitle><description>A newly isolated gene from Agrobacterium tumefaciens ( A. tumefaciens), which encoded a decaprenyl diphosphate synthase, was cloned in Escherichia coli ( E. coli), and its nucleotide sequence was determined. DNA sequence analysis revealed an open reading frame of 1077 bp capable of encoding a 358‐amino‐acid protein with a calculated isoelectric point of pH 5.16 and a molecular mass of 38 960 Da. The primary structure of the enzyme shared significant homology with prenyl diphosphate synthases from various sources. The deduced amino acid sequence included oligopeptide DDxxD aspartate‐rich domains conserved in the majority of prenyl diphosphate synthases. High levels of the active enzyme were expressed in the soluble fraction and were readily purified to homogeneity by Ni‐NTA chromatography. E. coliJM109 harboring the dps gene produced ubiquinone‐10 in addition to endogenous ubiquinone‐8, while E. coli JM109 harboring the dps gene mutated on the DDxxD domain lost the ability to produce ubiquinone‐10, which suggests that the A. tumefaciens dps gene is functionally expressed in E. coli and that it encodes a decaprenyl diphosphate synthase.</description><subject>Agrobacterium tumefaciens</subject><subject>Agrobacterium tumefaciens - enzymology</subject><subject>Agrobacterium tumefaciens - genetics</subject><subject>Alkyl and Aryl Transferases - chemistry</subject><subject>Alkyl and Aryl Transferases - genetics</subject><subject>Alkyl and Aryl Transferases - metabolism</subject><subject>Amino Acid Sequence</subject><subject>Biological and medical sciences</subject><subject>Biotechnology</subject><subject>Cloning, Molecular - methods</subject><subject>Escherichia coli - enzymology</subject><subject>Escherichia coli - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Expression Regulation, Bacterial - physiology</subject><subject>Gene Expression Regulation, Enzymologic - physiology</subject><subject>Molecular Sequence Data</subject><subject>Molecular Weight</subject><subject>Protein Engineering - methods</subject><subject>Sequence Homology, Amino Acid</subject><issn>8756-7938</issn><issn>1520-6033</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0UFvFCEUB3BiNHa7evALKBdNPIzyBgZmj3Wj1aSpprYx8UJY5rE7OgNTmEk7317qbtqT8QQkv__jwSPkBbB3wEp4vxkYFyVwfEQWUJWskIzzx2RRq0oWasXrI3Kc0i_GWM1k-ZQcgVCS1yVfkHndBd_6LTW-oW7ydmyDNx3F2yFiSvlAg6PjDmkzJLpFjxS9Dc1dpEFrsvJzR5t22IU07MyINM1-3JmE1MXQ05NtDBtjR4zt1NNx6tEZ26JPz8gTZ7qEzw_rklx9-ni5_lycfT39sj45K2wFwAsAsG7jrFArUytRqooxa40AJo2UYEDUFRfC1byysGpQrkCiqLg10FjZCL4kb_Z1hxiuJ0yj7ttkseuMxzAlXTPIVSX_LwRVqrrM37kkb_fQxpBSRKeH2PYmzhqYvhuIvh9Iti8PRadNj82DPEwgg9cHYJI1nYvG2zY9uErIWmS4JGzvbtoO53_fqD9cfrv4u82RYh9p04i39xETf2upuKr0j_NTXSpWyZ_rc32R_au9dyZos425javvJQPOgHHG88v_AMFnuw8</recordid><startdate>2004</startdate><enddate>2004</enddate><creator>Lee, J.K</creator><creator>Her, G</creator><creator>Kim, S.Y</creator><creator>Seo, J.H</creator><general>American Chemical Society</general><general>American Institute of Chemical Engineers</general><scope>FBQ</scope><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>2004</creationdate><title>Cloning and functional expression of the dps gene encoding decaprenyl diphosphate synthase from Agrobacterium tumefaciens</title><author>Lee, J.K ; Her, G ; Kim, S.Y ; Seo, J.H</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5113-111cfbfc479a87427500cca4106a661a1485344f835c19de6916e453ca1dc6d43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Agrobacterium tumefaciens</topic><topic>Agrobacterium tumefaciens - enzymology</topic><topic>Agrobacterium tumefaciens - genetics</topic><topic>Alkyl and Aryl Transferases - chemistry</topic><topic>Alkyl and Aryl Transferases - genetics</topic><topic>Alkyl and Aryl Transferases - metabolism</topic><topic>Amino Acid Sequence</topic><topic>Biological and medical sciences</topic><topic>Biotechnology</topic><topic>Cloning, Molecular - methods</topic><topic>Escherichia coli - enzymology</topic><topic>Escherichia coli - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Expression Regulation, Bacterial - physiology</topic><topic>Gene Expression Regulation, Enzymologic - physiology</topic><topic>Molecular Sequence Data</topic><topic>Molecular Weight</topic><topic>Protein Engineering - methods</topic><topic>Sequence Homology, Amino Acid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, J.K</creatorcontrib><creatorcontrib>Her, G</creatorcontrib><creatorcontrib>Kim, S.Y</creatorcontrib><creatorcontrib>Seo, J.H</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>Biotechnology progress</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, J.K</au><au>Her, G</au><au>Kim, S.Y</au><au>Seo, J.H</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Cloning and functional expression of the dps gene encoding decaprenyl diphosphate synthase from Agrobacterium tumefaciens</atitle><jtitle>Biotechnology progress</jtitle><addtitle>Biotechnol Progress</addtitle><date>2004</date><risdate>2004</risdate><volume>20</volume><issue>1</issue><spage>51</spage><epage>56</epage><pages>51-56</pages><issn>8756-7938</issn><eissn>1520-6033</eissn><coden>BIPRET</coden><abstract>A newly isolated gene from Agrobacterium tumefaciens ( A. tumefaciens), which encoded a decaprenyl diphosphate synthase, was cloned in Escherichia coli ( E. coli), and its nucleotide sequence was determined. DNA sequence analysis revealed an open reading frame of 1077 bp capable of encoding a 358‐amino‐acid protein with a calculated isoelectric point of pH 5.16 and a molecular mass of 38 960 Da. The primary structure of the enzyme shared significant homology with prenyl diphosphate synthases from various sources. The deduced amino acid sequence included oligopeptide DDxxD aspartate‐rich domains conserved in the majority of prenyl diphosphate synthases. High levels of the active enzyme were expressed in the soluble fraction and were readily purified to homogeneity by Ni‐NTA chromatography. E. coliJM109 harboring the dps gene produced ubiquinone‐10 in addition to endogenous ubiquinone‐8, while E. coli JM109 harboring the dps gene mutated on the DDxxD domain lost the ability to produce ubiquinone‐10, which suggests that the A. tumefaciens dps gene is functionally expressed in E. coli and that it encodes a decaprenyl diphosphate synthase.</abstract><cop>USA</cop><pub>American Chemical Society</pub><pmid>14763823</pmid><doi>10.1021/bp034213e</doi><tpages>6</tpages></addata></record> |
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subjects | Agrobacterium tumefaciens Agrobacterium tumefaciens - enzymology Agrobacterium tumefaciens - genetics Alkyl and Aryl Transferases - chemistry Alkyl and Aryl Transferases - genetics Alkyl and Aryl Transferases - metabolism Amino Acid Sequence Biological and medical sciences Biotechnology Cloning, Molecular - methods Escherichia coli - enzymology Escherichia coli - genetics Fundamental and applied biological sciences. Psychology Gene Expression Regulation, Bacterial - physiology Gene Expression Regulation, Enzymologic - physiology Molecular Sequence Data Molecular Weight Protein Engineering - methods Sequence Homology, Amino Acid |
title | Cloning and functional expression of the dps gene encoding decaprenyl diphosphate synthase from Agrobacterium tumefaciens |
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