A virus related to Soybean mosaic virus from Pinellia ternata in China and its comparison with local soybean SMV isolates
A potyvirus isolated from Pinellia ternata in China was characterised and shown to be related to Soybean mosaic virus (SMV). The virus was pathogenic on P. ternata and some soybean cultivars, whereas the local soybean SMV isolate HH5 did not infect P. ternata. Western blot experiments demonstrated a...
Gespeichert in:
| Veröffentlicht in: | Archives of virology 2004-02, Vol.149 (2), p.349-363 |
|---|---|
| Hauptverfasser: | , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 363 |
|---|---|
| container_issue | 2 |
| container_start_page | 349 |
| container_title | Archives of virology |
| container_volume | 149 |
| creator | CHEN, J ZHENG, H.-Y LIN, L ADAMS, M. J ANTONIW, J. F ZHAO, M.-F SHANG, Y.-F CHEN, J.-P |
| description | A potyvirus isolated from Pinellia ternata in China was characterised and shown to be related to Soybean mosaic virus (SMV). The virus was pathogenic on P. ternata and some soybean cultivars, whereas the local soybean SMV isolate HH5 did not infect P. ternata. Western blot experiments demonstrated a serological relationship between the virus from Pinellia, SMV and Watermelon mosaic virus (WMV). The complete nucleotide sequences of the Pinellia virus (isolate P-1, 9735 nt) and of the Chinese soybean SMV isolates HH5 (9585 nt) and HZ (9588 nt) were determined. A 1733 nt sequence at the 3'-terminus of a second isolate from Pinellia (isolate P-2) was also determined. The predicted polyprotein of isolate P-1 has 83% amino acid (aa) identity with those of published SMV sequences. In many parts of the genome, aa identity was about 90% but it was much lower in the P1 protein region (24-29%), where it more closely resembled Dasheen mosaic virus (62%). The partial sequence of isolate P-2 had 91% nt identity to P-1 and both isolates resembled a recent sequence in the public databases (AF469171) wrongly named Zantedeschia mosaic virus. The two complete SMV soybean sequences had 93-95% nt identity with those of the previously sequenced isolates and >97% amino acid identity. Phylogenetic analysis and comparisons of coat proteins suggest that the Pinellia, WMV and SMV potyviruses should probably be treated as strains of the same species. |
| doi_str_mv | 10.1007/s00705-003-0184-8 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_80117046</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>708216031</sourcerecordid><originalsourceid>FETCH-LOGICAL-c385t-16179a22609946b0c246fddfbec6eda2843cecdd4c15a9611ef71f4f4ba9f1383</originalsourceid><addsrcrecordid>eNqFkV2L1TAQhoMo7nH1B3gjQdC76kyTpunlclg_YEVh1dswTRM2S9sck1Y5_94cTmHBG28SyDx5J5mHsZcI7xCgfZ_LAk0FICpALSv9iO1QirrSbacfsx0IKIcK9AV7lvM9FBBE85RdoGxlowB27HjFf4e0Zp7cSIsb-BL5bTz2jmY-xUzBbnWf4sS_hdmNYyC-uDTTQjzMfH8XZuI0Dzwsmds4HSiFHGf-Jyx3fIyWRp63xNsvP3mpnTrl5-yJpzG7F9t-yX58uP6-_1TdfP34eX91U1mhm6VChW1Hda2g66TqwdZS-WHwvbPKDVRrKayzwyAtNtQpROdb9NLLnjqPQotL9vace0jx1-ryYqaQbfkGzS6u2WhAbEGq_4LY1Q0KCQV8_Q94H9cyjzGbGmtZON0UCM-QTTHn5Lw5pDBROhoEc7JnzvZMkWJO9szpqa-24LWf3PBwY9NVgDcbQLnM1SeabcgPXCOVxtL8L8w4omM</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>212419285</pqid></control><display><type>article</type><title>A virus related to Soybean mosaic virus from Pinellia ternata in China and its comparison with local soybean SMV isolates</title><source>MEDLINE</source><source>SpringerNature Journals</source><creator>CHEN, J ; ZHENG, H.-Y ; LIN, L ; ADAMS, M. J ; ANTONIW, J. F ; ZHAO, M.-F ; SHANG, Y.-F ; CHEN, J.-P</creator><creatorcontrib>CHEN, J ; ZHENG, H.-Y ; LIN, L ; ADAMS, M. J ; ANTONIW, J. F ; ZHAO, M.-F ; SHANG, Y.-F ; CHEN, J.-P</creatorcontrib><description>A potyvirus isolated from Pinellia ternata in China was characterised and shown to be related to Soybean mosaic virus (SMV). The virus was pathogenic on P. ternata and some soybean cultivars, whereas the local soybean SMV isolate HH5 did not infect P. ternata. Western blot experiments demonstrated a serological relationship between the virus from Pinellia, SMV and Watermelon mosaic virus (WMV). The complete nucleotide sequences of the Pinellia virus (isolate P-1, 9735 nt) and of the Chinese soybean SMV isolates HH5 (9585 nt) and HZ (9588 nt) were determined. A 1733 nt sequence at the 3'-terminus of a second isolate from Pinellia (isolate P-2) was also determined. The predicted polyprotein of isolate P-1 has 83% amino acid (aa) identity with those of published SMV sequences. In many parts of the genome, aa identity was about 90% but it was much lower in the P1 protein region (24-29%), where it more closely resembled Dasheen mosaic virus (62%). The partial sequence of isolate P-2 had 91% nt identity to P-1 and both isolates resembled a recent sequence in the public databases (AF469171) wrongly named Zantedeschia mosaic virus. The two complete SMV soybean sequences had 93-95% nt identity with those of the previously sequenced isolates and >97% amino acid identity. Phylogenetic analysis and comparisons of coat proteins suggest that the Pinellia, WMV and SMV potyviruses should probably be treated as strains of the same species.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-003-0184-8</identifier><identifier>PMID: 14745600</identifier><language>eng</language><publisher>Wien: Springer</publisher><subject>Amino Acid Sequence ; Biological and medical sciences ; China ; Fundamental and applied biological sciences. Psychology ; Genome, Viral ; Glycine max - virology ; Human viral diseases ; Infectious diseases ; Medical sciences ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Phylogeny ; Pinellia - virology ; Pinellia ternata ; Plant Diseases - virology ; Polyproteins - chemistry ; Polyproteins - metabolism ; Potyvirus - classification ; Potyvirus - genetics ; Potyvirus - isolation & purification ; Potyvirus - metabolism ; Soybean mosaic virus ; Species Specificity ; Viral diseases ; Viral Proteins - chemistry ; Viral Proteins - metabolism ; Virology</subject><ispartof>Archives of virology, 2004-02, Vol.149 (2), p.349-363</ispartof><rights>2004 INIST-CNRS</rights><rights>Copyright Springer-Verlag 2004</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c385t-16179a22609946b0c246fddfbec6eda2843cecdd4c15a9611ef71f4f4ba9f1383</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,27929,27930</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15468185$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14745600$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>CHEN, J</creatorcontrib><creatorcontrib>ZHENG, H.-Y</creatorcontrib><creatorcontrib>LIN, L</creatorcontrib><creatorcontrib>ADAMS, M. J</creatorcontrib><creatorcontrib>ANTONIW, J. F</creatorcontrib><creatorcontrib>ZHAO, M.-F</creatorcontrib><creatorcontrib>SHANG, Y.-F</creatorcontrib><creatorcontrib>CHEN, J.-P</creatorcontrib><title>A virus related to Soybean mosaic virus from Pinellia ternata in China and its comparison with local soybean SMV isolates</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><description>A potyvirus isolated from Pinellia ternata in China was characterised and shown to be related to Soybean mosaic virus (SMV). The virus was pathogenic on P. ternata and some soybean cultivars, whereas the local soybean SMV isolate HH5 did not infect P. ternata. Western blot experiments demonstrated a serological relationship between the virus from Pinellia, SMV and Watermelon mosaic virus (WMV). The complete nucleotide sequences of the Pinellia virus (isolate P-1, 9735 nt) and of the Chinese soybean SMV isolates HH5 (9585 nt) and HZ (9588 nt) were determined. A 1733 nt sequence at the 3'-terminus of a second isolate from Pinellia (isolate P-2) was also determined. The predicted polyprotein of isolate P-1 has 83% amino acid (aa) identity with those of published SMV sequences. In many parts of the genome, aa identity was about 90% but it was much lower in the P1 protein region (24-29%), where it more closely resembled Dasheen mosaic virus (62%). The partial sequence of isolate P-2 had 91% nt identity to P-1 and both isolates resembled a recent sequence in the public databases (AF469171) wrongly named Zantedeschia mosaic virus. The two complete SMV soybean sequences had 93-95% nt identity with those of the previously sequenced isolates and >97% amino acid identity. Phylogenetic analysis and comparisons of coat proteins suggest that the Pinellia, WMV and SMV potyviruses should probably be treated as strains of the same species.</description><subject>Amino Acid Sequence</subject><subject>Biological and medical sciences</subject><subject>China</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genome, Viral</subject><subject>Glycine max - virology</subject><subject>Human viral diseases</subject><subject>Infectious diseases</subject><subject>Medical sciences</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Pinellia - virology</subject><subject>Pinellia ternata</subject><subject>Plant Diseases - virology</subject><subject>Polyproteins - chemistry</subject><subject>Polyproteins - metabolism</subject><subject>Potyvirus - classification</subject><subject>Potyvirus - genetics</subject><subject>Potyvirus - isolation & purification</subject><subject>Potyvirus - metabolism</subject><subject>Soybean mosaic virus</subject><subject>Species Specificity</subject><subject>Viral diseases</subject><subject>Viral Proteins - chemistry</subject><subject>Viral Proteins - metabolism</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkV2L1TAQhoMo7nH1B3gjQdC76kyTpunlclg_YEVh1dswTRM2S9sck1Y5_94cTmHBG28SyDx5J5mHsZcI7xCgfZ_LAk0FICpALSv9iO1QirrSbacfsx0IKIcK9AV7lvM9FBBE85RdoGxlowB27HjFf4e0Zp7cSIsb-BL5bTz2jmY-xUzBbnWf4sS_hdmNYyC-uDTTQjzMfH8XZuI0Dzwsmds4HSiFHGf-Jyx3fIyWRp63xNsvP3mpnTrl5-yJpzG7F9t-yX58uP6-_1TdfP34eX91U1mhm6VChW1Hda2g66TqwdZS-WHwvbPKDVRrKayzwyAtNtQpROdb9NLLnjqPQotL9vace0jx1-ryYqaQbfkGzS6u2WhAbEGq_4LY1Q0KCQV8_Q94H9cyjzGbGmtZON0UCM-QTTHn5Lw5pDBROhoEc7JnzvZMkWJO9szpqa-24LWf3PBwY9NVgDcbQLnM1SeabcgPXCOVxtL8L8w4omM</recordid><startdate>20040201</startdate><enddate>20040201</enddate><creator>CHEN, J</creator><creator>ZHENG, H.-Y</creator><creator>LIN, L</creator><creator>ADAMS, M. J</creator><creator>ANTONIW, J. F</creator><creator>ZHAO, M.-F</creator><creator>SHANG, Y.-F</creator><creator>CHEN, J.-P</creator><general>Springer</general><general>Springer Nature B.V</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20040201</creationdate><title>A virus related to Soybean mosaic virus from Pinellia ternata in China and its comparison with local soybean SMV isolates</title><author>CHEN, J ; ZHENG, H.-Y ; LIN, L ; ADAMS, M. J ; ANTONIW, J. F ; ZHAO, M.-F ; SHANG, Y.-F ; CHEN, J.-P</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c385t-16179a22609946b0c246fddfbec6eda2843cecdd4c15a9611ef71f4f4ba9f1383</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2004</creationdate><topic>Amino Acid Sequence</topic><topic>Biological and medical sciences</topic><topic>China</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genome, Viral</topic><topic>Glycine max - virology</topic><topic>Human viral diseases</topic><topic>Infectious diseases</topic><topic>Medical sciences</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Pinellia - virology</topic><topic>Pinellia ternata</topic><topic>Plant Diseases - virology</topic><topic>Polyproteins - chemistry</topic><topic>Polyproteins - metabolism</topic><topic>Potyvirus - classification</topic><topic>Potyvirus - genetics</topic><topic>Potyvirus - isolation & purification</topic><topic>Potyvirus - metabolism</topic><topic>Soybean mosaic virus</topic><topic>Species Specificity</topic><topic>Viral diseases</topic><topic>Viral Proteins - chemistry</topic><topic>Viral Proteins - metabolism</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>CHEN, J</creatorcontrib><creatorcontrib>ZHENG, H.-Y</creatorcontrib><creatorcontrib>LIN, L</creatorcontrib><creatorcontrib>ADAMS, M. J</creatorcontrib><creatorcontrib>ANTONIW, J. F</creatorcontrib><creatorcontrib>ZHAO, M.-F</creatorcontrib><creatorcontrib>SHANG, Y.-F</creatorcontrib><creatorcontrib>CHEN, J.-P</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection (ProQuest)</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>CHEN, J</au><au>ZHENG, H.-Y</au><au>LIN, L</au><au>ADAMS, M. J</au><au>ANTONIW, J. F</au><au>ZHAO, M.-F</au><au>SHANG, Y.-F</au><au>CHEN, J.-P</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A virus related to Soybean mosaic virus from Pinellia ternata in China and its comparison with local soybean SMV isolates</atitle><jtitle>Archives of virology</jtitle><addtitle>Arch Virol</addtitle><date>2004-02-01</date><risdate>2004</risdate><volume>149</volume><issue>2</issue><spage>349</spage><epage>363</epage><pages>349-363</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>A potyvirus isolated from Pinellia ternata in China was characterised and shown to be related to Soybean mosaic virus (SMV). The virus was pathogenic on P. ternata and some soybean cultivars, whereas the local soybean SMV isolate HH5 did not infect P. ternata. Western blot experiments demonstrated a serological relationship between the virus from Pinellia, SMV and Watermelon mosaic virus (WMV). The complete nucleotide sequences of the Pinellia virus (isolate P-1, 9735 nt) and of the Chinese soybean SMV isolates HH5 (9585 nt) and HZ (9588 nt) were determined. A 1733 nt sequence at the 3'-terminus of a second isolate from Pinellia (isolate P-2) was also determined. The predicted polyprotein of isolate P-1 has 83% amino acid (aa) identity with those of published SMV sequences. In many parts of the genome, aa identity was about 90% but it was much lower in the P1 protein region (24-29%), where it more closely resembled Dasheen mosaic virus (62%). The partial sequence of isolate P-2 had 91% nt identity to P-1 and both isolates resembled a recent sequence in the public databases (AF469171) wrongly named Zantedeschia mosaic virus. The two complete SMV soybean sequences had 93-95% nt identity with those of the previously sequenced isolates and >97% amino acid identity. Phylogenetic analysis and comparisons of coat proteins suggest that the Pinellia, WMV and SMV potyviruses should probably be treated as strains of the same species.</abstract><cop>Wien</cop><cop>New York, NY</cop><pub>Springer</pub><pmid>14745600</pmid><doi>10.1007/s00705-003-0184-8</doi><tpages>15</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0304-8608 |
| ispartof | Archives of virology, 2004-02, Vol.149 (2), p.349-363 |
| issn | 0304-8608 1432-8798 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_80117046 |
| source | MEDLINE; SpringerNature Journals |
| subjects | Amino Acid Sequence Biological and medical sciences China Fundamental and applied biological sciences. Psychology Genome, Viral Glycine max - virology Human viral diseases Infectious diseases Medical sciences Microbiology Miscellaneous Molecular Sequence Data Phylogeny Pinellia - virology Pinellia ternata Plant Diseases - virology Polyproteins - chemistry Polyproteins - metabolism Potyvirus - classification Potyvirus - genetics Potyvirus - isolation & purification Potyvirus - metabolism Soybean mosaic virus Species Specificity Viral diseases Viral Proteins - chemistry Viral Proteins - metabolism Virology |
| title | A virus related to Soybean mosaic virus from Pinellia ternata in China and its comparison with local soybean SMV isolates |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-12T13%3A47%3A01IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20virus%20related%20to%20Soybean%20mosaic%20virus%20from%20Pinellia%20ternata%20in%20China%20and%20its%20comparison%20with%20local%20soybean%20SMV%20isolates&rft.jtitle=Archives%20of%20virology&rft.au=CHEN,%20J&rft.date=2004-02-01&rft.volume=149&rft.issue=2&rft.spage=349&rft.epage=363&rft.pages=349-363&rft.issn=0304-8608&rft.eissn=1432-8798&rft_id=info:doi/10.1007/s00705-003-0184-8&rft_dat=%3Cproquest_cross%3E708216031%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=212419285&rft_id=info:pmid/14745600&rfr_iscdi=true |