Complete cDNA sequence of a South American isolate of potato virus X
The complete cDNA sequence corresponding to the genome RNA of a South American strain of potato virus X (PVXc) is reported. The sequence (6432 nucleotides) contains five open reading frames coding for polypeptides with molecular weights of 165.3, 24.3, 12.3 7.6 and 25.0 and displays an overall homol...
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| Veröffentlicht in: | Virus research 1990-07, Vol.16 (3), p.293-305 |
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| container_title | Virus research |
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| creator | Orman, Betina E. Celnik, Rosana M. Mandel, Alejandra M. Torres, Hector N. Mentaberry, Alejandro N. |
| description | The complete cDNA sequence corresponding to the genome RNA of a South American strain of potato virus X (PVXc) is reported. The sequence (6432 nucleotides) contains five open reading frames coding for polypeptides with molecular weights of 165.3, 24.3, 12.3 7.6 and 25.0 and displays an overall homology of 77.4% with those previously reported for two European isolates. Comparison of amino acid sequences shows an average homology of 87%. Two major domains of variability, located between amino acids 476–615 of ORF 1 and 64–100 of ORF 5, are identified. Sequence similarities between RNA stretches lying upstream of ORFs 2, 4 and 5, and at the 3'-non coding regions of PVX and other plus-strand RNA viruses are described. |
| doi_str_mv | 10.1016/0168-1702(90)90054-F |
| format | Article |
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The sequence (6432 nucleotides) contains five open reading frames coding for polypeptides with molecular weights of 165.3, 24.3, 12.3 7.6 and 25.0 and displays an overall homology of 77.4% with those previously reported for two European isolates. Comparison of amino acid sequences shows an average homology of 87%. Two major domains of variability, located between amino acids 476–615 of ORF 1 and 64–100 of ORF 5, are identified. Sequence similarities between RNA stretches lying upstream of ORFs 2, 4 and 5, and at the 3'-non coding regions of PVX and other plus-strand RNA viruses are described.</description><identifier>ISSN: 0168-1702</identifier><identifier>EISSN: 1872-7492</identifier><identifier>DOI: 10.1016/0168-1702(90)90054-F</identifier><identifier>PMID: 2392880</identifier><identifier>CODEN: VIREDF</identifier><language>eng</language><publisher>London: Elsevier B.V</publisher><subject>ADN ; AMERICA DEL SUR ; AMERIQUE DU SUD ; Amino Acid Sequence ; Base Sequence ; Biological and medical sciences ; Cloning, Molecular ; DNA ; DNA, Viral ; Europe ; Fundamental and applied biological sciences. Psychology ; Genes, Viral ; Genetics ; Microbiology ; Molecular Sequence Data ; NUCLEOTIDE SEQUENCE ; Plant Viruses - genetics ; Potato virus ; POTEXVIRUS ; POTEXVIRUSES ; PVX ; RNA, Viral - isolation & purification ; SECUENCIA NUCLEICA ; Sequence comparison ; Sequence Homology, Nucleic Acid ; SEQUENCE NUCLEIQUE ; SOLANUM TUBEROSUM ; Solanum tuberosum - microbiology ; SOUTH AMERICA ; Virology</subject><ispartof>Virus research, 1990-07, Vol.16 (3), p.293-305</ispartof><rights>1990</rights><rights>1991 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c437t-2d1758b50d34908f77d418b411a5a92d5e97a951b74a1b0b164d86397bbb94233</citedby><cites>FETCH-LOGICAL-c437t-2d1758b50d34908f77d418b411a5a92d5e97a951b74a1b0b164d86397bbb94233</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/0168-1702(90)90054-F$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=19348797$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/2392880$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Orman, Betina E.</creatorcontrib><creatorcontrib>Celnik, Rosana M.</creatorcontrib><creatorcontrib>Mandel, Alejandra M.</creatorcontrib><creatorcontrib>Torres, Hector N.</creatorcontrib><creatorcontrib>Mentaberry, Alejandro N.</creatorcontrib><title>Complete cDNA sequence of a South American isolate of potato virus X</title><title>Virus research</title><addtitle>Virus Res</addtitle><description>The complete cDNA sequence corresponding to the genome RNA of a South American strain of potato virus X (PVXc) is reported. The sequence (6432 nucleotides) contains five open reading frames coding for polypeptides with molecular weights of 165.3, 24.3, 12.3 7.6 and 25.0 and displays an overall homology of 77.4% with those previously reported for two European isolates. Comparison of amino acid sequences shows an average homology of 87%. Two major domains of variability, located between amino acids 476–615 of ORF 1 and 64–100 of ORF 5, are identified. Sequence similarities between RNA stretches lying upstream of ORFs 2, 4 and 5, and at the 3'-non coding regions of PVX and other plus-strand RNA viruses are described.</description><subject>ADN</subject><subject>AMERICA DEL SUR</subject><subject>AMERIQUE DU SUD</subject><subject>Amino Acid Sequence</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Cloning, Molecular</subject><subject>DNA</subject><subject>DNA, Viral</subject><subject>Europe</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, Viral</subject><subject>Genetics</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>NUCLEOTIDE SEQUENCE</subject><subject>Plant Viruses - genetics</subject><subject>Potato virus</subject><subject>POTEXVIRUS</subject><subject>POTEXVIRUSES</subject><subject>PVX</subject><subject>RNA, Viral - isolation & purification</subject><subject>SECUENCIA NUCLEICA</subject><subject>Sequence comparison</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>SEQUENCE NUCLEIQUE</subject><subject>SOLANUM TUBEROSUM</subject><subject>Solanum tuberosum - microbiology</subject><subject>SOUTH AMERICA</subject><subject>Virology</subject><issn>0168-1702</issn><issn>1872-7492</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1990</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUFPHCEYhkmjsavtHzCacGlTD9N-MMwAlyabtasmGz3YJr0RYJiKmVlWmDHpv5dxN3rTA-HwPt-bjweETgh8J0DqH_mIgnCg3yScSYCKFcsPaEYEpwVnku6h2QvyER2mdA8AdcnrA3RAS0mFgBk6X4R-07nBYXt-PcfJPYxubR0OLdb4NozDHZ73Lnqr19in0OnhOduEQQ8BP_o4Jvz3E9pvdZfc5919hP4sf_1eXBarm4urxXxVWFbyoaAN4ZUwFTQlkyBazhtGhGGE6EpL2lROci0rYjjTxIAhNWtEXUpujJGMluUR-rrt3cSQ90yD6n2yruv02oUxKS5lzWXJ3gVJDawWFckg24I2hpSia9Um-l7H_4qAmiyrSaGaFCoJ6tmyWuax013_aHrXvAzttOb8yy7XyequjXptfXrtzjsKLnnmjrdcq4PS_2JmrleSAKUwvfbnNnRZ6aN3USXrp89pfHR2UE3wb2_5BE1indw</recordid><startdate>19900701</startdate><enddate>19900701</enddate><creator>Orman, Betina E.</creator><creator>Celnik, Rosana M.</creator><creator>Mandel, Alejandra M.</creator><creator>Torres, Hector N.</creator><creator>Mentaberry, Alejandro N.</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>19900701</creationdate><title>Complete cDNA sequence of a South American isolate of potato virus X</title><author>Orman, Betina E. ; Celnik, Rosana M. ; Mandel, Alejandra M. ; Torres, Hector N. ; Mentaberry, Alejandro N.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c437t-2d1758b50d34908f77d418b411a5a92d5e97a951b74a1b0b164d86397bbb94233</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1990</creationdate><topic>ADN</topic><topic>AMERICA DEL SUR</topic><topic>AMERIQUE DU SUD</topic><topic>Amino Acid Sequence</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Cloning, Molecular</topic><topic>DNA</topic><topic>DNA, Viral</topic><topic>Europe</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, Viral</topic><topic>Genetics</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>NUCLEOTIDE SEQUENCE</topic><topic>Plant Viruses - genetics</topic><topic>Potato virus</topic><topic>POTEXVIRUS</topic><topic>POTEXVIRUSES</topic><topic>PVX</topic><topic>RNA, Viral - isolation & purification</topic><topic>SECUENCIA NUCLEICA</topic><topic>Sequence comparison</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>SEQUENCE NUCLEIQUE</topic><topic>SOLANUM TUBEROSUM</topic><topic>Solanum tuberosum - microbiology</topic><topic>SOUTH AMERICA</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Orman, Betina E.</creatorcontrib><creatorcontrib>Celnik, Rosana M.</creatorcontrib><creatorcontrib>Mandel, Alejandra M.</creatorcontrib><creatorcontrib>Torres, Hector N.</creatorcontrib><creatorcontrib>Mentaberry, Alejandro N.</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Virus research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Orman, Betina E.</au><au>Celnik, Rosana M.</au><au>Mandel, Alejandra M.</au><au>Torres, Hector N.</au><au>Mentaberry, Alejandro N.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete cDNA sequence of a South American isolate of potato virus X</atitle><jtitle>Virus research</jtitle><addtitle>Virus Res</addtitle><date>1990-07-01</date><risdate>1990</risdate><volume>16</volume><issue>3</issue><spage>293</spage><epage>305</epage><pages>293-305</pages><issn>0168-1702</issn><eissn>1872-7492</eissn><coden>VIREDF</coden><abstract>The complete cDNA sequence corresponding to the genome RNA of a South American strain of potato virus X (PVXc) is reported. The sequence (6432 nucleotides) contains five open reading frames coding for polypeptides with molecular weights of 165.3, 24.3, 12.3 7.6 and 25.0 and displays an overall homology of 77.4% with those previously reported for two European isolates. Comparison of amino acid sequences shows an average homology of 87%. Two major domains of variability, located between amino acids 476–615 of ORF 1 and 64–100 of ORF 5, are identified. Sequence similarities between RNA stretches lying upstream of ORFs 2, 4 and 5, and at the 3'-non coding regions of PVX and other plus-strand RNA viruses are described.</abstract><cop>London</cop><cop>Shannon</cop><cop>Amsterdam</cop><pub>Elsevier B.V</pub><pmid>2392880</pmid><doi>10.1016/0168-1702(90)90054-F</doi><tpages>13</tpages></addata></record> |
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| ispartof | Virus research, 1990-07, Vol.16 (3), p.293-305 |
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| subjects | ADN AMERICA DEL SUR AMERIQUE DU SUD Amino Acid Sequence Base Sequence Biological and medical sciences Cloning, Molecular DNA DNA, Viral Europe Fundamental and applied biological sciences. Psychology Genes, Viral Genetics Microbiology Molecular Sequence Data NUCLEOTIDE SEQUENCE Plant Viruses - genetics Potato virus POTEXVIRUS POTEXVIRUSES PVX RNA, Viral - isolation & purification SECUENCIA NUCLEICA Sequence comparison Sequence Homology, Nucleic Acid SEQUENCE NUCLEIQUE SOLANUM TUBEROSUM Solanum tuberosum - microbiology SOUTH AMERICA Virology |
| title | Complete cDNA sequence of a South American isolate of potato virus X |
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