Design of DNA-Binding Peptides Based on the Leucine Zipper Motif

A class of transcriptional regulator proteins bind to DNA at dyad-symmetric sites through a motif consisting of (i) a "leucine zipper" sequence that associates into noncovalent, parallel, α-helical dimers and (ii) a covalently connected basic region necessary for binding DNA. The basic reg...

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Veröffentlicht in:Science (American Association for the Advancement of Science) 1990-08, Vol.249 (4970), p.774-778
Hauptverfasser: O'Neil, Karyn T., Hoess, Ronald H., DeGrado, William F.
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container_issue 4970
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container_title Science (American Association for the Advancement of Science)
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creator O'Neil, Karyn T.
Hoess, Ronald H.
DeGrado, William F.
description A class of transcriptional regulator proteins bind to DNA at dyad-symmetric sites through a motif consisting of (i) a "leucine zipper" sequence that associates into noncovalent, parallel, α-helical dimers and (ii) a covalently connected basic region necessary for binding DNA. The basic regions are predicted to be disordered in the absence of DNA and to form α helices when bound to DNA. These helices bind in the major groove forming multiple hydrogen-bonded and van der Waals contacts with the nucleotide bases. To test this model, two peptides were designed that were identical to natural leucine zipper proteins only at positions hypothesized to be critical for dimerization and DNA recognition. The peptides form dimers that bind specifically to DNA with their basic regions in α-helical conformations.
doi_str_mv 10.1126/science.2389143
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Psychology ; Gels ; Genetic regulation ; Hydrogen Bonding ; Hydrogen bonds ; Leucine ; Macromolecular Substances ; Modeling ; Models, Molecular ; Molecular and cellular biology ; Molecular genetics ; Molecular Sequence Data ; Nucleotide sequence ; Nucleotide sequences ; Oligonucleotides ; Physiological aspects ; Protein Conformation ; Proteins ; Scissors ; Transcription. Transcription factor. Splicing. 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The peptides form dimers that bind specifically to DNA with their basic regions in α-helical conformations.</description><subject>Amino Acid Sequence</subject><subject>Amino acids</subject><subject>Base Sequence</subject><subject>Binding Sites</subject><subject>Biological and medical sciences</subject><subject>Chemical Phenomena</subject><subject>Chemistry, Physical</subject><subject>Circular Dichroism</subject><subject>Computer Simulation</subject><subject>Deoxyribonucleic acid</subject><subject>Dimers</subject><subject>DNA</subject><subject>DNA - metabolism</subject><subject>DNA binding proteins</subject><subject>DNA-Binding Proteins - metabolism</subject><subject>Enzymes</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gels</subject><subject>Genetic regulation</subject><subject>Hydrogen Bonding</subject><subject>Hydrogen bonds</subject><subject>Leucine</subject><subject>Macromolecular Substances</subject><subject>Modeling</subject><subject>Models, Molecular</subject><subject>Molecular and cellular biology</subject><subject>Molecular genetics</subject><subject>Molecular Sequence Data</subject><subject>Nucleotide sequence</subject><subject>Nucleotide sequences</subject><subject>Oligonucleotides</subject><subject>Physiological aspects</subject><subject>Protein Conformation</subject><subject>Proteins</subject><subject>Scissors</subject><subject>Transcription. Transcription factor. Splicing. 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source American Association for the Advancement of Science; Jstor Complete Legacy; MEDLINE
subjects Amino Acid Sequence
Amino acids
Base Sequence
Binding Sites
Biological and medical sciences
Chemical Phenomena
Chemistry, Physical
Circular Dichroism
Computer Simulation
Deoxyribonucleic acid
Dimers
DNA
DNA - metabolism
DNA binding proteins
DNA-Binding Proteins - metabolism
Enzymes
Fundamental and applied biological sciences. Psychology
Gels
Genetic regulation
Hydrogen Bonding
Hydrogen bonds
Leucine
Macromolecular Substances
Modeling
Models, Molecular
Molecular and cellular biology
Molecular genetics
Molecular Sequence Data
Nucleotide sequence
Nucleotide sequences
Oligonucleotides
Physiological aspects
Protein Conformation
Proteins
Scissors
Transcription. Transcription factor. Splicing. Rna processing
title Design of DNA-Binding Peptides Based on the Leucine Zipper Motif
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