Design of DNA-Binding Peptides Based on the Leucine Zipper Motif
A class of transcriptional regulator proteins bind to DNA at dyad-symmetric sites through a motif consisting of (i) a "leucine zipper" sequence that associates into noncovalent, parallel, α-helical dimers and (ii) a covalently connected basic region necessary for binding DNA. The basic reg...
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Veröffentlicht in: | Science (American Association for the Advancement of Science) 1990-08, Vol.249 (4970), p.774-778 |
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creator | O'Neil, Karyn T. Hoess, Ronald H. DeGrado, William F. |
description | A class of transcriptional regulator proteins bind to DNA at dyad-symmetric sites through a motif consisting of (i) a "leucine zipper" sequence that associates into noncovalent, parallel, α-helical dimers and (ii) a covalently connected basic region necessary for binding DNA. The basic regions are predicted to be disordered in the absence of DNA and to form α helices when bound to DNA. These helices bind in the major groove forming multiple hydrogen-bonded and van der Waals contacts with the nucleotide bases. To test this model, two peptides were designed that were identical to natural leucine zipper proteins only at positions hypothesized to be critical for dimerization and DNA recognition. The peptides form dimers that bind specifically to DNA with their basic regions in α-helical conformations. |
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The basic regions are predicted to be disordered in the absence of DNA and to form α helices when bound to DNA. These helices bind in the major groove forming multiple hydrogen-bonded and van der Waals contacts with the nucleotide bases. To test this model, two peptides were designed that were identical to natural leucine zipper proteins only at positions hypothesized to be critical for dimerization and DNA recognition. The peptides form dimers that bind specifically to DNA with their basic regions in α-helical conformations.</description><identifier>ISSN: 0036-8075</identifier><identifier>EISSN: 1095-9203</identifier><identifier>DOI: 10.1126/science.2389143</identifier><identifier>PMID: 2389143</identifier><identifier>CODEN: SCIEAS</identifier><language>eng</language><publisher>Washington, DC: American Society for the Advancement of Science</publisher><subject>Amino Acid Sequence ; Amino acids ; Base Sequence ; Binding Sites ; Biological and medical sciences ; Chemical Phenomena ; Chemistry, Physical ; Circular Dichroism ; Computer Simulation ; Deoxyribonucleic acid ; Dimers ; DNA ; DNA - metabolism ; DNA binding proteins ; DNA-Binding Proteins - metabolism ; Enzymes ; Fundamental and applied biological sciences. Psychology ; Gels ; Genetic regulation ; Hydrogen Bonding ; Hydrogen bonds ; Leucine ; Macromolecular Substances ; Modeling ; Models, Molecular ; Molecular and cellular biology ; Molecular genetics ; Molecular Sequence Data ; Nucleotide sequence ; Nucleotide sequences ; Oligonucleotides ; Physiological aspects ; Protein Conformation ; Proteins ; Scissors ; Transcription. Transcription factor. Splicing. Rna processing</subject><ispartof>Science (American Association for the Advancement of Science), 1990-08, Vol.249 (4970), p.774-778</ispartof><rights>Copyright 1990 American Association for the Advancement of Science</rights><rights>1991 INIST-CNRS</rights><rights>Copyright American Association for the Advancement of Science Aug 17, 1990</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c499t-6398975820d122115f7ec3deb2fef08305137ddb9f119fce8cdbb9289c192d553</citedby><cites>FETCH-LOGICAL-c499t-6398975820d122115f7ec3deb2fef08305137ddb9f119fce8cdbb9289c192d553</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/2878082$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/2878082$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,799,2871,2872,27901,27902,57992,58225</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=19572061$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/2389143$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>O'Neil, Karyn T.</creatorcontrib><creatorcontrib>Hoess, Ronald H.</creatorcontrib><creatorcontrib>DeGrado, William F.</creatorcontrib><title>Design of DNA-Binding Peptides Based on the Leucine Zipper Motif</title><title>Science (American Association for the Advancement of Science)</title><addtitle>Science</addtitle><description>A class of transcriptional regulator proteins bind to DNA at dyad-symmetric sites through a motif consisting of (i) a "leucine zipper" sequence that associates into noncovalent, parallel, α-helical dimers and (ii) a covalently connected basic region necessary for binding DNA. The basic regions are predicted to be disordered in the absence of DNA and to form α helices when bound to DNA. These helices bind in the major groove forming multiple hydrogen-bonded and van der Waals contacts with the nucleotide bases. To test this model, two peptides were designed that were identical to natural leucine zipper proteins only at positions hypothesized to be critical for dimerization and DNA recognition. The peptides form dimers that bind specifically to DNA with their basic regions in α-helical conformations.</description><subject>Amino Acid Sequence</subject><subject>Amino acids</subject><subject>Base Sequence</subject><subject>Binding Sites</subject><subject>Biological and medical sciences</subject><subject>Chemical Phenomena</subject><subject>Chemistry, Physical</subject><subject>Circular Dichroism</subject><subject>Computer Simulation</subject><subject>Deoxyribonucleic acid</subject><subject>Dimers</subject><subject>DNA</subject><subject>DNA - metabolism</subject><subject>DNA binding proteins</subject><subject>DNA-Binding Proteins - metabolism</subject><subject>Enzymes</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gels</subject><subject>Genetic regulation</subject><subject>Hydrogen Bonding</subject><subject>Hydrogen bonds</subject><subject>Leucine</subject><subject>Macromolecular Substances</subject><subject>Modeling</subject><subject>Models, Molecular</subject><subject>Molecular and cellular biology</subject><subject>Molecular genetics</subject><subject>Molecular Sequence Data</subject><subject>Nucleotide sequence</subject><subject>Nucleotide sequences</subject><subject>Oligonucleotides</subject><subject>Physiological aspects</subject><subject>Protein Conformation</subject><subject>Proteins</subject><subject>Scissors</subject><subject>Transcription. Transcription factor. Splicing. Rna processing</subject><issn>0036-8075</issn><issn>1095-9203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1990</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BEC</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqFkU2P0zAQhi0EWroLZy4gRUjAAWXXY9exfaPb5UsqLAe4cLESe1xcpXaIE2n596RqRCUOcPLhfebReF5CngC9BGDVVbYBo8VLxpWGJb9HFkC1KDWj_D5ZUMqrUlEpHpLznHeUTpnmZ-RsxhfkzQ3msI1F8sXN51V5HaILcVt8wW4IDnNxXWd0RYrF8AOLDY42RCy-h67DvviUhuAfkQe-bjM-nt8L8u3d26_rD-Xm9v3H9WpT2qXWQ1lxrbQUilEHjAEIL9Fyhw3z6KniVACXzjXaA2hvUVnXNJopbUEzJwS_IC-P3q5PP0fMg9mHbLFt64hpzEZqLaQEOYGv_g0uOUglK_5fJQitQdOD8vlf4C6NfZy-axhwMQn1YcHXR2hbt2hCtCkOeDfY1La4RTMdY31rVkpJBlU10VdH2vYp5x696fqwr_tfBqg5NGvmZs1c1TTxbF5ibPbo_vCn_MWc19nWre_raEM-aafzMFrBxD09crs8pP6kUVJRxfhv3WmyKA</recordid><startdate>19900817</startdate><enddate>19900817</enddate><creator>O'Neil, Karyn T.</creator><creator>Hoess, Ronald H.</creator><creator>DeGrado, William F.</creator><general>American Society for the Advancement of Science</general><general>American Association for the Advancement of Science</general><general>The American Association for the Advancement of Science</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>0-V</scope><scope>3V.</scope><scope>7QF</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QQ</scope><scope>7QR</scope><scope>7SC</scope><scope>7SE</scope><scope>7SN</scope><scope>7SP</scope><scope>7SR</scope><scope>7SS</scope><scope>7T7</scope><scope>7TA</scope><scope>7TB</scope><scope>7TK</scope><scope>7TM</scope><scope>7U5</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88B</scope><scope>88E</scope><scope>88I</scope><scope>8AF</scope><scope>8BQ</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ALSLI</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BEC</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>CJNVE</scope><scope>D1I</scope><scope>DWQXO</scope><scope>F28</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H8D</scope><scope>H8G</scope><scope>H94</scope><scope>HCIFZ</scope><scope>JG9</scope><scope>JQ2</scope><scope>K9-</scope><scope>K9.</scope><scope>KB.</scope><scope>KR7</scope><scope>L6V</scope><scope>L7M</scope><scope>LK8</scope><scope>L~C</scope><scope>L~D</scope><scope>M0K</scope><scope>M0P</scope><scope>M0R</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>MBDVC</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PCBAR</scope><scope>PDBOC</scope><scope>PQEDU</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>R05</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>19900817</creationdate><title>Design of DNA-Binding Peptides Based on the Leucine Zipper Motif</title><author>O'Neil, Karyn T. ; Hoess, Ronald H. ; DeGrado, William F.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c499t-6398975820d122115f7ec3deb2fef08305137ddb9f119fce8cdbb9289c192d553</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1990</creationdate><topic>Amino Acid Sequence</topic><topic>Amino acids</topic><topic>Base Sequence</topic><topic>Binding Sites</topic><topic>Biological and medical sciences</topic><topic>Chemical Phenomena</topic><topic>Chemistry, Physical</topic><topic>Circular Dichroism</topic><topic>Computer Simulation</topic><topic>Deoxyribonucleic acid</topic><topic>Dimers</topic><topic>DNA</topic><topic>DNA - metabolism</topic><topic>DNA binding proteins</topic><topic>DNA-Binding Proteins - metabolism</topic><topic>Enzymes</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gels</topic><topic>Genetic regulation</topic><topic>Hydrogen Bonding</topic><topic>Hydrogen bonds</topic><topic>Leucine</topic><topic>Macromolecular Substances</topic><topic>Modeling</topic><topic>Models, Molecular</topic><topic>Molecular and cellular biology</topic><topic>Molecular genetics</topic><topic>Molecular Sequence Data</topic><topic>Nucleotide sequence</topic><topic>Nucleotide sequences</topic><topic>Oligonucleotides</topic><topic>Physiological aspects</topic><topic>Protein Conformation</topic><topic>Proteins</topic><topic>Scissors</topic><topic>Transcription. Transcription factor. Splicing. 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Motif</atitle><jtitle>Science (American Association for the Advancement of Science)</jtitle><addtitle>Science</addtitle><date>1990-08-17</date><risdate>1990</risdate><volume>249</volume><issue>4970</issue><spage>774</spage><epage>778</epage><pages>774-778</pages><issn>0036-8075</issn><eissn>1095-9203</eissn><coden>SCIEAS</coden><abstract>A class of transcriptional regulator proteins bind to DNA at dyad-symmetric sites through a motif consisting of (i) a "leucine zipper" sequence that associates into noncovalent, parallel, α-helical dimers and (ii) a covalently connected basic region necessary for binding DNA. The basic regions are predicted to be disordered in the absence of DNA and to form α helices when bound to DNA. These helices bind in the major groove forming multiple hydrogen-bonded and van der Waals contacts with the nucleotide bases. To test this model, two peptides were designed that were identical to natural leucine zipper proteins only at positions hypothesized to be critical for dimerization and DNA recognition. The peptides form dimers that bind specifically to DNA with their basic regions in α-helical conformations.</abstract><cop>Washington, DC</cop><pub>American Society for the Advancement of Science</pub><pmid>2389143</pmid><doi>10.1126/science.2389143</doi><tpages>5</tpages></addata></record> |
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source | American Association for the Advancement of Science; Jstor Complete Legacy; MEDLINE |
subjects | Amino Acid Sequence Amino acids Base Sequence Binding Sites Biological and medical sciences Chemical Phenomena Chemistry, Physical Circular Dichroism Computer Simulation Deoxyribonucleic acid Dimers DNA DNA - metabolism DNA binding proteins DNA-Binding Proteins - metabolism Enzymes Fundamental and applied biological sciences. Psychology Gels Genetic regulation Hydrogen Bonding Hydrogen bonds Leucine Macromolecular Substances Modeling Models, Molecular Molecular and cellular biology Molecular genetics Molecular Sequence Data Nucleotide sequence Nucleotide sequences Oligonucleotides Physiological aspects Protein Conformation Proteins Scissors Transcription. Transcription factor. Splicing. Rna processing |
title | Design of DNA-Binding Peptides Based on the Leucine Zipper Motif |
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