Prediction of splice sites in plant pre-mRNA from sequence properties

Heterologous introns are often inaccurately or inefficiently processed in higher plants. The precise features that distinguish the process of pre-mRNA splicing in plants from splicing in yeast and mammals are unclear. One contributing factor is the prominent base compositional contrast between U-ric...

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Veröffentlicht in:	Journal of molecular biology 1998-02, Vol.276 (1), p.85-104
Hauptverfasser:	Brendel, Volker, Kleffe, Jürgen, Carle-Urioste, Jose C, Walbot, Virginia
Format:	Artikel
Sprache:	eng
Schlagworte:	alternative splicing Animals Arabidopsis - genetics Arabidopsis thaliana Base Composition Base Sequence compositional contrast exons Exons - genetics Genes, Synthetic Glycine max intron introns Introns - genetics Mammals - genetics messenger RNA Models, Chemical Pisum sativum Pisum sativum - genetics precursors prediction RNA - genetics RNA Precursors - chemistry RNA Precursors - genetics RNA Splicing RNA, Plant - chemistry RNA, Plant - genetics Species Specificity splice site models splice site prediction Transgenes Zea mays Zea mays - genetics
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