Genetic Diversity and Epidemiology of Hantaviruses in Argentina
Phylogenetic analysis of a 292-nucleotide (nt) fragment of the hantavirus M genome segment from 36 rodent and 13 human samples from three known foci of hantavirus infection in Argentina was conducted. A 1654-nt fragment of the M genome segment was analyzed for 1 representative of 7 genetically disti...
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| Veröffentlicht in: | The Journal of infectious diseases 1998-03, Vol.177 (3), p.529-538 |
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| container_title | The Journal of infectious diseases |
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| creator | Levis, Silvana Morzunov, Sergey P. Rowe, Joan E. Enria, Delia Pini, Noemi Calderon, Gladys Sabattini, Martha St. Jeor, Stephen C. |
| description | Phylogenetic analysis of a 292-nucleotide (nt) fragment of the hantavirus M genome segment from 36 rodent and 13 human samples from three known foci of hantavirus infection in Argentina was conducted. A 1654-nt fragment of the M genome segment was analyzed for 1 representative of 7 genetically distinct hantavirus lineages identified. Additionally, the nt sequence of the complete M genome segments of Lechiguanas, Oran, and Hu39694 hantavirus genotypes was determined. nt sequence comparisons reveal that 7 hantavirus lineages from Argentina differ from each other by 11.5%–21.8% and from Sin Nombre, Bayou, and Black Creek Canal viruses by 23.8%–26.5%. Phylogenetic analyses demonstrate that they form a unique, separate branch within the clade containing other New World sigmodontine-borne hantaviruses. Most Oligoryzomys-borne hantavirus genotypes clearly map together. The Oligoryzomys-borne genotypes Lechiguanas, Oran, and Andes appear to be associated with human disease. Oligoryzomys longicaudatus was identified as the likely rodent reservoir for Andes virus. |
| doi_str_mv | 10.1086/514221 |
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A 1654-nt fragment of the M genome segment was analyzed for 1 representative of 7 genetically distinct hantavirus lineages identified. Additionally, the nt sequence of the complete M genome segments of Lechiguanas, Oran, and Hu39694 hantavirus genotypes was determined. nt sequence comparisons reveal that 7 hantavirus lineages from Argentina differ from each other by 11.5%–21.8% and from Sin Nombre, Bayou, and Black Creek Canal viruses by 23.8%–26.5%. Phylogenetic analyses demonstrate that they form a unique, separate branch within the clade containing other New World sigmodontine-borne hantaviruses. Most Oligoryzomys-borne hantavirus genotypes clearly map together. The Oligoryzomys-borne genotypes Lechiguanas, Oran, and Andes appear to be associated with human disease. Oligoryzomys longicaudatus was identified as the likely rodent reservoir for Andes virus.</description><identifier>ISSN: 0022-1899</identifier><identifier>EISSN: 1537-6613</identifier><identifier>DOI: 10.1086/514221</identifier><identifier>PMID: 9498428</identifier><identifier>CODEN: JIDIAQ</identifier><language>eng</language><publisher>Chicago, IL: The University of Chicago Press</publisher><subject>Animals ; Argentina - epidemiology ; Biological and medical sciences ; Disease Reservoirs ; Epidemiology ; Fundamental and applied biological sciences. Psychology ; Genomes ; Genotypes ; Geographic regions ; Hantavirus ; Hantavirus - classification ; Hantavirus - genetics ; Hantavirus Infections - epidemiology ; Hantavirus Infections - veterinary ; Hantavirus Infections - virology ; Hantavirus pulmonary syndrome ; Hantavirus Pulmonary Syndrome - epidemiology ; Hantavirus Pulmonary Syndrome - virology ; Human genetics ; Humans ; Major Articles ; Medical genetics ; Microbiology ; Molecular Sequence Data ; Muridae - virology ; Phylogenetics ; Phylogeny ; Rodent Diseases - epidemiology ; Rodent Diseases - virology ; Rodents ; Virology ; Viruses</subject><ispartof>The Journal of infectious diseases, 1998-03, Vol.177 (3), p.529-538</ispartof><rights>Copyright 1998 The University of Chicago</rights><rights>1998 INIST-CNRS</rights><rights>Copyright University of Chicago, acting through its Press Mar 1998</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c421t-914069d8df9f451313869754e6b702a82f56d7de1ad2bc24641505f7e15a2d613</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/30106896$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/30106896$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,799,27901,27902,57992,58225</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=2174894$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/9498428$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Levis, Silvana</creatorcontrib><creatorcontrib>Morzunov, Sergey P.</creatorcontrib><creatorcontrib>Rowe, Joan E.</creatorcontrib><creatorcontrib>Enria, Delia</creatorcontrib><creatorcontrib>Pini, Noemi</creatorcontrib><creatorcontrib>Calderon, Gladys</creatorcontrib><creatorcontrib>Sabattini, Martha</creatorcontrib><creatorcontrib>St. Jeor, Stephen C.</creatorcontrib><title>Genetic Diversity and Epidemiology of Hantaviruses in Argentina</title><title>The Journal of infectious diseases</title><addtitle>The Journal of Infectious Diseases</addtitle><description>Phylogenetic analysis of a 292-nucleotide (nt) fragment of the hantavirus M genome segment from 36 rodent and 13 human samples from three known foci of hantavirus infection in Argentina was conducted. A 1654-nt fragment of the M genome segment was analyzed for 1 representative of 7 genetically distinct hantavirus lineages identified. Additionally, the nt sequence of the complete M genome segments of Lechiguanas, Oran, and Hu39694 hantavirus genotypes was determined. nt sequence comparisons reveal that 7 hantavirus lineages from Argentina differ from each other by 11.5%–21.8% and from Sin Nombre, Bayou, and Black Creek Canal viruses by 23.8%–26.5%. Phylogenetic analyses demonstrate that they form a unique, separate branch within the clade containing other New World sigmodontine-borne hantaviruses. Most Oligoryzomys-borne hantavirus genotypes clearly map together. The Oligoryzomys-borne genotypes Lechiguanas, Oran, and Andes appear to be associated with human disease. Oligoryzomys longicaudatus was identified as the likely rodent reservoir for Andes virus.</description><subject>Animals</subject><subject>Argentina - epidemiology</subject><subject>Biological and medical sciences</subject><subject>Disease Reservoirs</subject><subject>Epidemiology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genomes</subject><subject>Genotypes</subject><subject>Geographic regions</subject><subject>Hantavirus</subject><subject>Hantavirus - classification</subject><subject>Hantavirus - genetics</subject><subject>Hantavirus Infections - epidemiology</subject><subject>Hantavirus Infections - veterinary</subject><subject>Hantavirus Infections - virology</subject><subject>Hantavirus pulmonary syndrome</subject><subject>Hantavirus Pulmonary Syndrome - epidemiology</subject><subject>Hantavirus Pulmonary Syndrome - virology</subject><subject>Human genetics</subject><subject>Humans</subject><subject>Major Articles</subject><subject>Medical genetics</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Muridae - virology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Rodent Diseases - epidemiology</subject><subject>Rodent Diseases - virology</subject><subject>Rodents</subject><subject>Virology</subject><subject>Viruses</subject><issn>0022-1899</issn><issn>1537-6613</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkEtrGzEUhUVJSJy0_QeBoYTsJtHVW6uS5mEHQrppS-lGyCNNkDvWuNJMiP99FGwc6Cabexffx4FzEPoM-BywEhccGCHwAU2AU1kLAXQPTTAmpAal9SE6ynmBMWZUyAN0oJlWjKgJ-jr10Q-hqa7Dk085DOvKRlfdrILzy9B3_eO66ttqZuNgn0Ias89ViNVlevRxCNF-RPut7bL_tP3H6OftzY-rWX3_fXp3dXlfN4zAUGtgWGinXKtbxoECVUJLzryYS0ysIi0XTjoP1pF5Q5hgwDFvpQduiStljtHZJneV-n-jz4NZhtz4rrPR92M2UktSqtF3RRBEUSZlEb_8Jy76McVSwhBCNUC5b2lN6nNOvjWrFJY2rQ1g87q72exexJNt2jhferfTtkMXfrrlNje2a5ONTcg7jYBkSrO3mEUe-rTDFAMWSovC6w0PefDPO27TX1PKS25mv_8YAQ8P4teUmW_0BTPSnrE</recordid><startdate>19980301</startdate><enddate>19980301</enddate><creator>Levis, Silvana</creator><creator>Morzunov, Sergey P.</creator><creator>Rowe, Joan E.</creator><creator>Enria, Delia</creator><creator>Pini, Noemi</creator><creator>Calderon, Gladys</creator><creator>Sabattini, Martha</creator><creator>St. Jeor, Stephen C.</creator><general>The University of Chicago Press</general><general>University of Chicago Press</general><general>Oxford University Press</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>K9.</scope><scope>NAPCQ</scope><scope>7U9</scope><scope>H94</scope><scope>7X8</scope></search><sort><creationdate>19980301</creationdate><title>Genetic Diversity and Epidemiology of Hantaviruses in Argentina</title><author>Levis, Silvana ; Morzunov, Sergey P. ; Rowe, Joan E. ; Enria, Delia ; Pini, Noemi ; Calderon, Gladys ; Sabattini, Martha ; St. Jeor, Stephen C.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c421t-914069d8df9f451313869754e6b702a82f56d7de1ad2bc24641505f7e15a2d613</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>Animals</topic><topic>Argentina - epidemiology</topic><topic>Biological and medical sciences</topic><topic>Disease Reservoirs</topic><topic>Epidemiology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genomes</topic><topic>Genotypes</topic><topic>Geographic regions</topic><topic>Hantavirus</topic><topic>Hantavirus - classification</topic><topic>Hantavirus - genetics</topic><topic>Hantavirus Infections - epidemiology</topic><topic>Hantavirus Infections - veterinary</topic><topic>Hantavirus Infections - virology</topic><topic>Hantavirus pulmonary syndrome</topic><topic>Hantavirus Pulmonary Syndrome - epidemiology</topic><topic>Hantavirus Pulmonary Syndrome - virology</topic><topic>Human genetics</topic><topic>Humans</topic><topic>Major Articles</topic><topic>Medical genetics</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Muridae - virology</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Rodent Diseases - epidemiology</topic><topic>Rodent Diseases - virology</topic><topic>Rodents</topic><topic>Virology</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Levis, Silvana</creatorcontrib><creatorcontrib>Morzunov, Sergey P.</creatorcontrib><creatorcontrib>Rowe, Joan E.</creatorcontrib><creatorcontrib>Enria, Delia</creatorcontrib><creatorcontrib>Pini, Noemi</creatorcontrib><creatorcontrib>Calderon, Gladys</creatorcontrib><creatorcontrib>Sabattini, Martha</creatorcontrib><creatorcontrib>St. Jeor, Stephen C.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Premium</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of infectious diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Levis, Silvana</au><au>Morzunov, Sergey P.</au><au>Rowe, Joan E.</au><au>Enria, Delia</au><au>Pini, Noemi</au><au>Calderon, Gladys</au><au>Sabattini, Martha</au><au>St. Jeor, Stephen C.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic Diversity and Epidemiology of Hantaviruses in Argentina</atitle><jtitle>The Journal of infectious diseases</jtitle><addtitle>The Journal of Infectious Diseases</addtitle><date>1998-03-01</date><risdate>1998</risdate><volume>177</volume><issue>3</issue><spage>529</spage><epage>538</epage><pages>529-538</pages><issn>0022-1899</issn><eissn>1537-6613</eissn><coden>JIDIAQ</coden><abstract>Phylogenetic analysis of a 292-nucleotide (nt) fragment of the hantavirus M genome segment from 36 rodent and 13 human samples from three known foci of hantavirus infection in Argentina was conducted. A 1654-nt fragment of the M genome segment was analyzed for 1 representative of 7 genetically distinct hantavirus lineages identified. Additionally, the nt sequence of the complete M genome segments of Lechiguanas, Oran, and Hu39694 hantavirus genotypes was determined. nt sequence comparisons reveal that 7 hantavirus lineages from Argentina differ from each other by 11.5%–21.8% and from Sin Nombre, Bayou, and Black Creek Canal viruses by 23.8%–26.5%. Phylogenetic analyses demonstrate that they form a unique, separate branch within the clade containing other New World sigmodontine-borne hantaviruses. Most Oligoryzomys-borne hantavirus genotypes clearly map together. The Oligoryzomys-borne genotypes Lechiguanas, Oran, and Andes appear to be associated with human disease. Oligoryzomys longicaudatus was identified as the likely rodent reservoir for Andes virus.</abstract><cop>Chicago, IL</cop><pub>The University of Chicago Press</pub><pmid>9498428</pmid><doi>10.1086/514221</doi><tpages>10</tpages></addata></record> |
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| ispartof | The Journal of infectious diseases, 1998-03, Vol.177 (3), p.529-538 |
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| subjects | Animals Argentina - epidemiology Biological and medical sciences Disease Reservoirs Epidemiology Fundamental and applied biological sciences. Psychology Genomes Genotypes Geographic regions Hantavirus Hantavirus - classification Hantavirus - genetics Hantavirus Infections - epidemiology Hantavirus Infections - veterinary Hantavirus Infections - virology Hantavirus pulmonary syndrome Hantavirus Pulmonary Syndrome - epidemiology Hantavirus Pulmonary Syndrome - virology Human genetics Humans Major Articles Medical genetics Microbiology Molecular Sequence Data Muridae - virology Phylogenetics Phylogeny Rodent Diseases - epidemiology Rodent Diseases - virology Rodents Virology Viruses |
| title | Genetic Diversity and Epidemiology of Hantaviruses in Argentina |
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