X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution
We have determined single crystal structures of an A‐DNA decamer and a B‐DNA dodecamer at 0.83 and 0.95 Å, respectively. The resolution of the former is the highest reported thus far for any right‐handed nucleic acid duplex and the quality of the diffraction data allowed determination of the structu...
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| Veröffentlicht in: | Biopolymers 1998, Vol.48 (4), p.234-252 |
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| container_title | Biopolymers |
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| creator | Egli, Martin Tereshko, Valentina Teplova, Marianna Minasov, George Joachimiak, Andrzei Sanishvili, Ruslan Weeks, Charles M. Miller, Russ Maier, Martin A. An, Haoyun Dan Cook, P. Manoharan, Muthiah |
| description | We have determined single crystal structures of an A‐DNA decamer and a B‐DNA dodecamer at 0.83 and 0.95 Å, respectively. The resolution of the former is the highest reported thus far for any right‐handed nucleic acid duplex and the quality of the diffraction data allowed determination of the structure with direct methods. The structures reveal unprecedented details of DNA fine structure and hydration; in particular, we have reexamined the overall hydration of A‐ and B‐form DNA, the distribution of water around phosphate groups, and features of the water structure that may underlie the B to A transition. © 2000 John Wiley & Sons, Inc. Biopoly 48: 234–252, 1998 |
| doi_str_mv | 10.1002/(SICI)1097-0282(1998)48:4<234::AID-BIP4>3.0.CO;2-H |
| format | Article |
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The resolution of the former is the highest reported thus far for any right‐handed nucleic acid duplex and the quality of the diffraction data allowed determination of the structure with direct methods. The structures reveal unprecedented details of DNA fine structure and hydration; in particular, we have reexamined the overall hydration of A‐ and B‐form DNA, the distribution of water around phosphate groups, and features of the water structure that may underlie the B to A transition. © 2000 John Wiley & Sons, Inc. Biopoly 48: 234–252, 1998</description><identifier>ISSN: 0006-3525</identifier><identifier>EISSN: 1097-0282</identifier><identifier>DOI: 10.1002/(SICI)1097-0282(1998)48:4<234::AID-BIP4>3.0.CO;2-H</identifier><identifier>PMID: 10699842</identifier><language>eng</language><publisher>Hoboken: Wiley Subscription Services, Inc., A Wiley Company</publisher><subject>A-DNA ; B-DNA ; Crystallography, X-Ray - methods ; direct methods ; DNA - chemistry ; DNA - ultrastructure ; hydration ; Nucleic Acid Conformation ; Oligodeoxyribonucleotides - chemistry ; Phosphates - chemistry ; Spermine - chemistry ; structural transition ; Water - chemistry ; water structure ; x-ray crystallography</subject><ispartof>Biopolymers, 1998, Vol.48 (4), p.234-252</ispartof><rights>Copyright © 2000 John Wiley & Sons, Inc.</rights><rights>Copyright 2000 John Wiley & Sons, Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2F%28SICI%291097-0282%281998%2948%3A4%3C234%3A%3AAID-BIP4%3E3.0.CO%3B2-H$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2F%28SICI%291097-0282%281998%2948%3A4%3C234%3A%3AAID-BIP4%3E3.0.CO%3B2-H$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>315,781,785,1418,4025,27928,27929,27930,45579,45580</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10699842$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Egli, Martin</creatorcontrib><creatorcontrib>Tereshko, Valentina</creatorcontrib><creatorcontrib>Teplova, Marianna</creatorcontrib><creatorcontrib>Minasov, George</creatorcontrib><creatorcontrib>Joachimiak, Andrzei</creatorcontrib><creatorcontrib>Sanishvili, Ruslan</creatorcontrib><creatorcontrib>Weeks, Charles M.</creatorcontrib><creatorcontrib>Miller, Russ</creatorcontrib><creatorcontrib>Maier, Martin A.</creatorcontrib><creatorcontrib>An, Haoyun</creatorcontrib><creatorcontrib>Dan Cook, P.</creatorcontrib><creatorcontrib>Manoharan, Muthiah</creatorcontrib><title>X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution</title><title>Biopolymers</title><addtitle>Biopolymers</addtitle><description>We have determined single crystal structures of an A‐DNA decamer and a B‐DNA dodecamer at 0.83 and 0.95 Å, respectively. The resolution of the former is the highest reported thus far for any right‐handed nucleic acid duplex and the quality of the diffraction data allowed determination of the structure with direct methods. The structures reveal unprecedented details of DNA fine structure and hydration; in particular, we have reexamined the overall hydration of A‐ and B‐form DNA, the distribution of water around phosphate groups, and features of the water structure that may underlie the B to A transition. © 2000 John Wiley & Sons, Inc. Biopoly 48: 234–252, 1998</description><subject>A-DNA</subject><subject>B-DNA</subject><subject>Crystallography, X-Ray - methods</subject><subject>direct methods</subject><subject>DNA - chemistry</subject><subject>DNA - ultrastructure</subject><subject>hydration</subject><subject>Nucleic Acid Conformation</subject><subject>Oligodeoxyribonucleotides - chemistry</subject><subject>Phosphates - chemistry</subject><subject>Spermine - chemistry</subject><subject>structural transition</subject><subject>Water - chemistry</subject><subject>water structure</subject><subject>x-ray crystallography</subject><issn>0006-3525</issn><issn>1097-0282</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kF2L1DAUhoMo7rj6F6RXsnuRMV9tmlGE2c66LSw7ix8o3hzSNHW6ttMx6eD235s6yyoowoGQkzfPCw9CC0rmlBD28uR9kRWnlCiJCUvZCVUqPRXpQrxmXCwWy2KFz4pr8YbPyTxbv2I4f4Bm9_GHaEYISTCPWXyEnnh_Q4gQnJLH6IiSJLAEm6Evn7HTY2Tc6Afdtv1Xp3ebxkR6q9vRNz7q62jY2GgzVk4PTb-dFksc3qvoDNe966LV1TLSQ5i-Cx-d9X27n5JP0aNat94-uzuP0ce35x-yHF-uL4pseYmNSKjAvKSxUkprUwpp05qm3FTKSsNKUpUmjatUmoTZspKaqZpJUrIqianR0iY0ifkxenHg7lz_fW_9AF3jjW1bvbX93oNUCWNU8BB8dwga13vvbA0713TajUAJTMYBJuMwKYRJIUzGQYSBYBwgGIfJOHAgkK2BQR6gz-_a92Vnqz-QB8W_W380rR3_qvxv4z8Kf90DFB-gjR_s7T1Uu2-QSC5j-HR1AYqsGMnzaxD8J5XSqQ0</recordid><startdate>1998</startdate><enddate>1998</enddate><creator>Egli, Martin</creator><creator>Tereshko, Valentina</creator><creator>Teplova, Marianna</creator><creator>Minasov, George</creator><creator>Joachimiak, Andrzei</creator><creator>Sanishvili, Ruslan</creator><creator>Weeks, Charles M.</creator><creator>Miller, Russ</creator><creator>Maier, Martin A.</creator><creator>An, Haoyun</creator><creator>Dan Cook, P.</creator><creator>Manoharan, Muthiah</creator><general>Wiley Subscription Services, Inc., A Wiley Company</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>1998</creationdate><title>X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution</title><author>Egli, Martin ; Tereshko, Valentina ; Teplova, Marianna ; Minasov, George ; Joachimiak, Andrzei ; Sanishvili, Ruslan ; Weeks, Charles M. ; Miller, Russ ; Maier, Martin A. ; An, Haoyun ; Dan Cook, P. ; Manoharan, Muthiah</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4614-3b15999aacb47e8f183cd9e7c2b0dbc85d87c62ebd7a29f270b2d651ca7e61653</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>A-DNA</topic><topic>B-DNA</topic><topic>Crystallography, X-Ray - methods</topic><topic>direct methods</topic><topic>DNA - chemistry</topic><topic>DNA - ultrastructure</topic><topic>hydration</topic><topic>Nucleic Acid Conformation</topic><topic>Oligodeoxyribonucleotides - chemistry</topic><topic>Phosphates - chemistry</topic><topic>Spermine - chemistry</topic><topic>structural transition</topic><topic>Water - chemistry</topic><topic>water structure</topic><topic>x-ray crystallography</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Egli, Martin</creatorcontrib><creatorcontrib>Tereshko, Valentina</creatorcontrib><creatorcontrib>Teplova, Marianna</creatorcontrib><creatorcontrib>Minasov, George</creatorcontrib><creatorcontrib>Joachimiak, Andrzei</creatorcontrib><creatorcontrib>Sanishvili, Ruslan</creatorcontrib><creatorcontrib>Weeks, Charles M.</creatorcontrib><creatorcontrib>Miller, Russ</creatorcontrib><creatorcontrib>Maier, Martin A.</creatorcontrib><creatorcontrib>An, Haoyun</creatorcontrib><creatorcontrib>Dan Cook, P.</creatorcontrib><creatorcontrib>Manoharan, Muthiah</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Biopolymers</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Egli, Martin</au><au>Tereshko, Valentina</au><au>Teplova, Marianna</au><au>Minasov, George</au><au>Joachimiak, Andrzei</au><au>Sanishvili, Ruslan</au><au>Weeks, Charles M.</au><au>Miller, Russ</au><au>Maier, Martin A.</au><au>An, Haoyun</au><au>Dan Cook, P.</au><au>Manoharan, Muthiah</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution</atitle><jtitle>Biopolymers</jtitle><addtitle>Biopolymers</addtitle><date>1998</date><risdate>1998</risdate><volume>48</volume><issue>4</issue><spage>234</spage><epage>252</epage><pages>234-252</pages><issn>0006-3525</issn><eissn>1097-0282</eissn><abstract>We have determined single crystal structures of an A‐DNA decamer and a B‐DNA dodecamer at 0.83 and 0.95 Å, respectively. The resolution of the former is the highest reported thus far for any right‐handed nucleic acid duplex and the quality of the diffraction data allowed determination of the structure with direct methods. The structures reveal unprecedented details of DNA fine structure and hydration; in particular, we have reexamined the overall hydration of A‐ and B‐form DNA, the distribution of water around phosphate groups, and features of the water structure that may underlie the B to A transition. © 2000 John Wiley & Sons, Inc. Biopoly 48: 234–252, 1998</abstract><cop>Hoboken</cop><pub>Wiley Subscription Services, Inc., A Wiley Company</pub><pmid>10699842</pmid><doi>10.1002/(SICI)1097-0282(1998)48:4<234::AID-BIP4>3.0.CO;2-H</doi><tpages>19</tpages></addata></record> |
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| subjects | A-DNA B-DNA Crystallography, X-Ray - methods direct methods DNA - chemistry DNA - ultrastructure hydration Nucleic Acid Conformation Oligodeoxyribonucleotides - chemistry Phosphates - chemistry Spermine - chemistry structural transition Water - chemistry water structure x-ray crystallography |
| title | X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution |
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