Sequence analysis of a 24-kb contiguous genomic region at the Arabidopsis thaliana PFL locus on chromosome 1
As part of the European Union program of European Scientist Sequencing Arabidopsis (ESSA), the DNA sequence of a 24.053-bp insert of cosmid clone CC17J13 was determined. The cosmid is located on chromosome 1 at the PFL locus (position 30 cM). Analysis of the sequence and comparison to public databas...
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| Veröffentlicht in: | FEBS letters 1997-10, Vol.416 (2), p.156-160 |
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| creator | Terryn, Nancy Neyt, Pia De Clercq, Rebecca De Keyser, Annick Van Den Daele, Hilde Ardiles, Wilson Déhais, Patrice Rouzé, Pierre Gielen, Jan Villarroel, Raimundo Van Montagu, Marc |
| description | As part of the European Union program of European Scientist Sequencing
Arabidopsis (ESSA), the DNA sequence of a 24.053-bp insert of cosmid clone CC17J13 was determined. The cosmid is located on chromosome 1 at the
PFL locus (position 30 cM). Analysis of the sequence and comparison to public databases predicts seven genes in this area, thus approximately one gene every 3.3 kb. Three cDNAs corresponding to genes in this region were also sequenced. The homologies and/or possible functions of the (putative) genes are discussed. Proteins encoded by genes in this region include a polyadenylate-binding protein (PAB-3) and a GTP-binding protein (Rab7) as well as a novel protein, possibly involved in double-stranded RNA unwinding and apoptosis. Intriguingly, the gene encoding the PAB-3 protein, which is very specifically expressed, is flanked by putative matrix attachment regions. |
| doi_str_mv | 10.1016/S0014-5793(97)01190-3 |
| format | Article |
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PFL locus (position 30 cM). Analysis of the sequence and comparison to public databases predicts seven genes in this area, thus approximately one gene every 3.3 kb. Three cDNAs corresponding to genes in this region were also sequenced. The homologies and/or possible functions of the (putative) genes are discussed. Proteins encoded by genes in this region include a polyadenylate-binding protein (PAB-3) and a GTP-binding protein (Rab7) as well as a novel protein, possibly involved in double-stranded RNA unwinding and apoptosis. Intriguingly, the gene encoding the PAB-3 protein, which is very specifically expressed, is flanked by putative matrix attachment regions.</description><identifier>ISSN: 0014-5793</identifier><identifier>EISSN: 1873-3468</identifier><identifier>DOI: 10.1016/S0014-5793(97)01190-3</identifier><identifier>PMID: 9369203</identifier><language>eng</language><publisher>England: Elsevier B.V</publisher><subject>Arabidopsis - genetics ; Arabidopsis thaliana ; Base Sequence ; Chromosome Mapping ; Databases as Topic ; DNA, Complementary ; DNA, Plant - chemistry ; Europe ; Genome, Plant ; GTP-Binding Proteins - genetics ; Molecular Sequence Data ; PFL1 ; Poly(A)-Binding Proteins ; rab GTP-Binding Proteins ; RNA-Binding Proteins - genetics ; Sequence ; Sequence Analysis, DNA ; Sequence Homology, Nucleic Acid</subject><ispartof>FEBS letters, 1997-10, Vol.416 (2), p.156-160</ispartof><rights>1997 Federation of European Biochemical societies</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/S0014-5793(97)01190-3$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,3548,27923,27924,45994</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/9369203$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Terryn, Nancy</creatorcontrib><creatorcontrib>Neyt, Pia</creatorcontrib><creatorcontrib>De Clercq, Rebecca</creatorcontrib><creatorcontrib>De Keyser, Annick</creatorcontrib><creatorcontrib>Van Den Daele, Hilde</creatorcontrib><creatorcontrib>Ardiles, Wilson</creatorcontrib><creatorcontrib>Déhais, Patrice</creatorcontrib><creatorcontrib>Rouzé, Pierre</creatorcontrib><creatorcontrib>Gielen, Jan</creatorcontrib><creatorcontrib>Villarroel, Raimundo</creatorcontrib><creatorcontrib>Van Montagu, Marc</creatorcontrib><title>Sequence analysis of a 24-kb contiguous genomic region at the Arabidopsis thaliana PFL locus on chromosome 1</title><title>FEBS letters</title><addtitle>FEBS Lett</addtitle><description>As part of the European Union program of European Scientist Sequencing
Arabidopsis (ESSA), the DNA sequence of a 24.053-bp insert of cosmid clone CC17J13 was determined. The cosmid is located on chromosome 1 at the
PFL locus (position 30 cM). Analysis of the sequence and comparison to public databases predicts seven genes in this area, thus approximately one gene every 3.3 kb. Three cDNAs corresponding to genes in this region were also sequenced. The homologies and/or possible functions of the (putative) genes are discussed. Proteins encoded by genes in this region include a polyadenylate-binding protein (PAB-3) and a GTP-binding protein (Rab7) as well as a novel protein, possibly involved in double-stranded RNA unwinding and apoptosis. Intriguingly, the gene encoding the PAB-3 protein, which is very specifically expressed, is flanked by putative matrix attachment regions.</description><subject>Arabidopsis - genetics</subject><subject>Arabidopsis thaliana</subject><subject>Base Sequence</subject><subject>Chromosome Mapping</subject><subject>Databases as Topic</subject><subject>DNA, Complementary</subject><subject>DNA, Plant - chemistry</subject><subject>Europe</subject><subject>Genome, Plant</subject><subject>GTP-Binding Proteins - genetics</subject><subject>Molecular Sequence Data</subject><subject>PFL1</subject><subject>Poly(A)-Binding Proteins</subject><subject>rab GTP-Binding Proteins</subject><subject>RNA-Binding Proteins - genetics</subject><subject>Sequence</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Nucleic Acid</subject><issn>0014-5793</issn><issn>1873-3468</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1997</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFUctKAzEUDaJofXyCkJXoYjSvmUxWUopVoaBQXYdMcttGZyZ1MhX8ezNtcevqPs65B849CF1ScksJLe7mhFCR5VLxayVvCKWKZPwAjWgpecZFUR6i0R_lBJ3G-EHSXFJ1jI4VLxQjfITqOXxtoLWATWvqn-gjDgtsMBPZZ4VtaHu_3IRNxEtoQ-Mt7mDpQ4tNj_sV4HFnKu_CerjrV6b2SQW_Tme4DjYdJaJddaEJMTSA6Tk6Wpg6wsW-nqH36cPb5CmbvTw-T8azDBjL-0zaauGcUzlNjZRK5U4SJVnaMWacyVlyVDlYVCxXRpakpETIXJaV4BR4yc_Q1U533YXkLva68dFCXZsWkhctlaB5Ici_RFpwIZkYFC_3xE3VgNPrzjem-9H7Pyb8fodDsvXtodPR-uGtzndge-2C15ToITi9DU4PqWgl9TY4zfkvcxCJcw</recordid><startdate>19971020</startdate><enddate>19971020</enddate><creator>Terryn, Nancy</creator><creator>Neyt, Pia</creator><creator>De Clercq, Rebecca</creator><creator>De Keyser, Annick</creator><creator>Van Den Daele, Hilde</creator><creator>Ardiles, Wilson</creator><creator>Déhais, Patrice</creator><creator>Rouzé, Pierre</creator><creator>Gielen, Jan</creator><creator>Villarroel, Raimundo</creator><creator>Van Montagu, Marc</creator><general>Elsevier B.V</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>19971020</creationdate><title>Sequence analysis of a 24-kb contiguous genomic region at the Arabidopsis thaliana PFL locus on chromosome 1</title><author>Terryn, Nancy ; Neyt, Pia ; De Clercq, Rebecca ; De Keyser, Annick ; Van Den Daele, Hilde ; Ardiles, Wilson ; Déhais, Patrice ; Rouzé, Pierre ; Gielen, Jan ; Villarroel, Raimundo ; Van Montagu, Marc</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-e225t-7cbfddd951cbf77995d70972ddd22ada52793bdefb259a78081047578b431e383</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1997</creationdate><topic>Arabidopsis - genetics</topic><topic>Arabidopsis thaliana</topic><topic>Base Sequence</topic><topic>Chromosome Mapping</topic><topic>Databases as Topic</topic><topic>DNA, Complementary</topic><topic>DNA, Plant - chemistry</topic><topic>Europe</topic><topic>Genome, Plant</topic><topic>GTP-Binding Proteins - genetics</topic><topic>Molecular Sequence Data</topic><topic>PFL1</topic><topic>Poly(A)-Binding Proteins</topic><topic>rab GTP-Binding Proteins</topic><topic>RNA-Binding Proteins - genetics</topic><topic>Sequence</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology, Nucleic Acid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Terryn, Nancy</creatorcontrib><creatorcontrib>Neyt, Pia</creatorcontrib><creatorcontrib>De Clercq, Rebecca</creatorcontrib><creatorcontrib>De Keyser, Annick</creatorcontrib><creatorcontrib>Van Den Daele, Hilde</creatorcontrib><creatorcontrib>Ardiles, Wilson</creatorcontrib><creatorcontrib>Déhais, Patrice</creatorcontrib><creatorcontrib>Rouzé, Pierre</creatorcontrib><creatorcontrib>Gielen, Jan</creatorcontrib><creatorcontrib>Villarroel, Raimundo</creatorcontrib><creatorcontrib>Van Montagu, Marc</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>FEBS letters</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Terryn, Nancy</au><au>Neyt, Pia</au><au>De Clercq, Rebecca</au><au>De Keyser, Annick</au><au>Van Den Daele, Hilde</au><au>Ardiles, Wilson</au><au>Déhais, Patrice</au><au>Rouzé, Pierre</au><au>Gielen, Jan</au><au>Villarroel, Raimundo</au><au>Van Montagu, Marc</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sequence analysis of a 24-kb contiguous genomic region at the Arabidopsis thaliana PFL locus on chromosome 1</atitle><jtitle>FEBS letters</jtitle><addtitle>FEBS Lett</addtitle><date>1997-10-20</date><risdate>1997</risdate><volume>416</volume><issue>2</issue><spage>156</spage><epage>160</epage><pages>156-160</pages><issn>0014-5793</issn><eissn>1873-3468</eissn><abstract>As part of the European Union program of European Scientist Sequencing
Arabidopsis (ESSA), the DNA sequence of a 24.053-bp insert of cosmid clone CC17J13 was determined. The cosmid is located on chromosome 1 at the
PFL locus (position 30 cM). Analysis of the sequence and comparison to public databases predicts seven genes in this area, thus approximately one gene every 3.3 kb. Three cDNAs corresponding to genes in this region were also sequenced. The homologies and/or possible functions of the (putative) genes are discussed. Proteins encoded by genes in this region include a polyadenylate-binding protein (PAB-3) and a GTP-binding protein (Rab7) as well as a novel protein, possibly involved in double-stranded RNA unwinding and apoptosis. Intriguingly, the gene encoding the PAB-3 protein, which is very specifically expressed, is flanked by putative matrix attachment regions.</abstract><cop>England</cop><pub>Elsevier B.V</pub><pmid>9369203</pmid><doi>10.1016/S0014-5793(97)01190-3</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Wiley Free Content; ScienceDirect Journals (5 years ago - present); Wiley Online Library All Journals; Alma/SFX Local Collection |
| subjects | Arabidopsis - genetics Arabidopsis thaliana Base Sequence Chromosome Mapping Databases as Topic DNA, Complementary DNA, Plant - chemistry Europe Genome, Plant GTP-Binding Proteins - genetics Molecular Sequence Data PFL1 Poly(A)-Binding Proteins rab GTP-Binding Proteins RNA-Binding Proteins - genetics Sequence Sequence Analysis, DNA Sequence Homology, Nucleic Acid |
| title | Sequence analysis of a 24-kb contiguous genomic region at the Arabidopsis thaliana PFL locus on chromosome 1 |
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