Triplet Repeat Polymorphism in the Transmembrane Region of the MICA Gene: A Strong Association of Six GCT Repetitions with Behçet Disease
A member of a novel family of the human major histocompatibility complex (MHC) class I genes termed MIC (MHC class I chain-related genes), MICA, has been recently identified near the HLA-B gene on the short arm of human chromosome 6. The predicted amino acid sequence of the MICA chain suggests that...
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Veröffentlicht in: | Proceedings of the National Academy of Sciences - PNAS 1997-02, Vol.94 (4), p.1298-1303 |
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creator | Mizuki, Nobuhisa Ota, Masao Kimura, Minoru Ohno, Shigeaki Ando, Hitoshi Katsuyama, Yoshihiko Yamazaki, Masaaki Watanabe, Koji Goto, Kaori Nakamura, Satoshi Bahram, Seiamak Inoko, Hidetoshi |
description | A member of a novel family of the human major histocompatibility complex (MHC) class I genes termed MIC (MHC class I chain-related genes), MICA, has been recently identified near the HLA-B gene on the short arm of human chromosome 6. The predicted amino acid sequence of the MICA chain suggests that it folds similarly to typical class I chains and may have the capacity to bind peptides or other short ligands. Therefore, MICA is predicted to have a specialized function in antigen presentation or T cell recognition. During nucleotide sequence analyses of the MICA genomic clone, we found a triplet repeat microsatellite polymorphism of (GCT/AGC)n in the transmembrane (TM) region of the MICA gene. In 68 HLA homozygous B cell lines, 5 distinct alleles of this microsatellite sequence were detected. One of them contained an additional one base insertion that created a frameshift mutation resulting in a premature termination codon in the TM region. This particular allele may encode a soluble, secreted form of the MICA molecule. In addition, we have investigated this microsatellite polymorphism in 77 Japanese patients with Behcet disease, which is known to be associated with HLA-B51. The microsatellite allele consisting of 6 repetitions of GCT/AGC was present at significantly higher frequency in the patient group (Pc = 0.00055) than in a control population. Furthermore, the (GCT/AGC)6 allele was present in all B51 positive patients and in an additional 13 B51 negative patients. These results suggest the possibility of a primary association of Behcet disease with MICA rather than HLA-B. |
doi_str_mv | 10.1073/pnas.94.4.1298 |
format | Article |
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The predicted amino acid sequence of the MICA chain suggests that it folds similarly to typical class I chains and may have the capacity to bind peptides or other short ligands. Therefore, MICA is predicted to have a specialized function in antigen presentation or T cell recognition. During nucleotide sequence analyses of the MICA genomic clone, we found a triplet repeat microsatellite polymorphism of (GCT/AGC)n in the transmembrane (TM) region of the MICA gene. In 68 HLA homozygous B cell lines, 5 distinct alleles of this microsatellite sequence were detected. One of them contained an additional one base insertion that created a frameshift mutation resulting in a premature termination codon in the TM region. This particular allele may encode a soluble, secreted form of the MICA molecule. In addition, we have investigated this microsatellite polymorphism in 77 Japanese patients with Behcet disease, which is known to be associated with HLA-B51. The microsatellite allele consisting of 6 repetitions of GCT/AGC was present at significantly higher frequency in the patient group (Pc = 0.00055) than in a control population. Furthermore, the (GCT/AGC)6 allele was present in all B51 positive patients and in an additional 13 B51 negative patients. These results suggest the possibility of a primary association of Behcet disease with MICA rather than HLA-B.</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.94.4.1298</identifier><identifier>PMID: 9037047</identifier><language>eng</language><publisher>United States: National Academy of Sciences of the United States of America</publisher><subject>Alleles ; Asian People ; B lymphocytes ; B-Lymphocytes - immunology ; Base Sequence ; Behcet syndrome ; Behcet Syndrome - etiology ; Behcet Syndrome - genetics ; Behcet Syndrome - immunology ; Biological Sciences ; Cell Line ; Cell lines ; Chi-Square Distribution ; Chromosomes, Artificial, Yeast ; Chromosomes, Human, Pair 6 ; Cosmids ; Disease ; DNA ; Exons - genetics ; Female ; Genes ; Genetics ; Histocompatibility Antigens Class I - genetics ; Histocompatibility Antigens Class I - immunology ; HLA B antigens ; HLA-B Antigens - genetics ; HLA-B51 Antigen ; Humans ; Japan ; Male ; Membrane Proteins - genetics ; Membrane Proteins - immunology ; Mica ; Microsatellites ; Molecular Sequence Data ; Phenotype ; Polymerase chain reaction ; Polymorphism, Genetic ; Sequence Analysis, DNA ; Trinucleotide Repeats - genetics</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 1997-02, Vol.94 (4), p.1298-1303</ispartof><rights>Copyright 1997 National Academy of Sciences</rights><rights>Copyright National Academy of Sciences Feb 18, 1997</rights><rights>Copyright © 1997, The National Academy of Sciences of the USA 1997</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c513t-bf3cff9943ae7506a373e4cab294068fc23d7f00b06ef75e9985c41d6f1e18d33</citedby><cites>FETCH-LOGICAL-c513t-bf3cff9943ae7506a373e4cab294068fc23d7f00b06ef75e9985c41d6f1e18d33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.pnas.org/content/94/4.cover.gif</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/41325$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/41325$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,727,780,784,803,885,27924,27925,53791,53793,58017,58250</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/9037047$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mizuki, Nobuhisa</creatorcontrib><creatorcontrib>Ota, Masao</creatorcontrib><creatorcontrib>Kimura, Minoru</creatorcontrib><creatorcontrib>Ohno, Shigeaki</creatorcontrib><creatorcontrib>Ando, Hitoshi</creatorcontrib><creatorcontrib>Katsuyama, Yoshihiko</creatorcontrib><creatorcontrib>Yamazaki, Masaaki</creatorcontrib><creatorcontrib>Watanabe, Koji</creatorcontrib><creatorcontrib>Goto, Kaori</creatorcontrib><creatorcontrib>Nakamura, Satoshi</creatorcontrib><creatorcontrib>Bahram, Seiamak</creatorcontrib><creatorcontrib>Inoko, Hidetoshi</creatorcontrib><title>Triplet Repeat Polymorphism in the Transmembrane Region of the MICA Gene: A Strong Association of Six GCT Repetitions with Behçet Disease</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>A member of a novel family of the human major histocompatibility complex (MHC) class I genes termed MIC (MHC class I chain-related genes), MICA, has been recently identified near the HLA-B gene on the short arm of human chromosome 6. The predicted amino acid sequence of the MICA chain suggests that it folds similarly to typical class I chains and may have the capacity to bind peptides or other short ligands. Therefore, MICA is predicted to have a specialized function in antigen presentation or T cell recognition. During nucleotide sequence analyses of the MICA genomic clone, we found a triplet repeat microsatellite polymorphism of (GCT/AGC)n in the transmembrane (TM) region of the MICA gene. In 68 HLA homozygous B cell lines, 5 distinct alleles of this microsatellite sequence were detected. One of them contained an additional one base insertion that created a frameshift mutation resulting in a premature termination codon in the TM region. This particular allele may encode a soluble, secreted form of the MICA molecule. In addition, we have investigated this microsatellite polymorphism in 77 Japanese patients with Behcet disease, which is known to be associated with HLA-B51. The microsatellite allele consisting of 6 repetitions of GCT/AGC was present at significantly higher frequency in the patient group (Pc = 0.00055) than in a control population. Furthermore, the (GCT/AGC)6 allele was present in all B51 positive patients and in an additional 13 B51 negative patients. These results suggest the possibility of a primary association of Behcet disease with MICA rather than HLA-B.</description><subject>Alleles</subject><subject>Asian People</subject><subject>B lymphocytes</subject><subject>B-Lymphocytes - immunology</subject><subject>Base Sequence</subject><subject>Behcet syndrome</subject><subject>Behcet Syndrome - etiology</subject><subject>Behcet Syndrome - genetics</subject><subject>Behcet Syndrome - immunology</subject><subject>Biological Sciences</subject><subject>Cell Line</subject><subject>Cell lines</subject><subject>Chi-Square Distribution</subject><subject>Chromosomes, Artificial, Yeast</subject><subject>Chromosomes, Human, Pair 6</subject><subject>Cosmids</subject><subject>Disease</subject><subject>DNA</subject><subject>Exons - genetics</subject><subject>Female</subject><subject>Genes</subject><subject>Genetics</subject><subject>Histocompatibility Antigens Class I - genetics</subject><subject>Histocompatibility Antigens Class I - immunology</subject><subject>HLA B antigens</subject><subject>HLA-B Antigens - genetics</subject><subject>HLA-B51 Antigen</subject><subject>Humans</subject><subject>Japan</subject><subject>Male</subject><subject>Membrane Proteins - genetics</subject><subject>Membrane Proteins - immunology</subject><subject>Mica</subject><subject>Microsatellites</subject><subject>Molecular Sequence Data</subject><subject>Phenotype</subject><subject>Polymerase chain reaction</subject><subject>Polymorphism, Genetic</subject><subject>Sequence Analysis, DNA</subject><subject>Trinucleotide Repeats - genetics</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1997</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFks2O0zAUhSMEGsrAlgUSksVidg127MQ2YlMKFKRBIKasLSe9bl0lcbBdmHkFXoQH4cVwplVVWMDCupLPd3x_fLPsMcE5wZw-H3odcslylpNCijvZhGBJphWT-G42wbjgU8EKdj97EMIWYyxLgc-yM4kpx4xPsh9Lb4cWIvoMA-iIPrn2pnN-2NjQIdujuAG09LoPHXR1ipDAtXU9cuZW-_B-PkML6OEFmqGr6F2_RrMQXGN1PGBX9hot5svbDNGOtwF9t3GDXsHm18-U-rUNoAM8zO4Z3QZ4dIjn2Ze3b5bzd9PLj4uU5XLalITGaW1oY4yUjGrgJa405RRYo-tCMlwJ0xR0xQ3GNa7A8BKkFGXDyKoyBIhYUXqevdy_O-zqDlYN9NHrVg3edtrfKKet-lPp7Uat3TdFJBdlsl8c7N593UGIqrOhgbZNw3G7oLgQRGDK_guSUkhMGE_gs7_Ardv5Ps1AFQlg6YxV53uo8S4ED-ZYMMFq3AQ1boKSTDE1bkIyPD1t84gfvv5EH31H9cR_8S9dmV3bRriOCXyyB7chOn8kGaFFSX8D_8LRvQ</recordid><startdate>19970218</startdate><enddate>19970218</enddate><creator>Mizuki, Nobuhisa</creator><creator>Ota, Masao</creator><creator>Kimura, Minoru</creator><creator>Ohno, Shigeaki</creator><creator>Ando, Hitoshi</creator><creator>Katsuyama, Yoshihiko</creator><creator>Yamazaki, Masaaki</creator><creator>Watanabe, Koji</creator><creator>Goto, Kaori</creator><creator>Nakamura, Satoshi</creator><creator>Bahram, Seiamak</creator><creator>Inoko, Hidetoshi</creator><general>National Academy of Sciences of the United States of America</general><general>National Acad Sciences</general><general>National Academy of Sciences</general><general>The National Academy of Sciences of the USA</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19970218</creationdate><title>Triplet Repeat Polymorphism in the Transmembrane Region of the MICA Gene: A Strong Association of Six GCT Repetitions with Behçet Disease</title><author>Mizuki, Nobuhisa ; Ota, Masao ; Kimura, Minoru ; Ohno, Shigeaki ; Ando, Hitoshi ; Katsuyama, Yoshihiko ; Yamazaki, Masaaki ; Watanabe, Koji ; Goto, Kaori ; Nakamura, Satoshi ; Bahram, Seiamak ; Inoko, Hidetoshi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c513t-bf3cff9943ae7506a373e4cab294068fc23d7f00b06ef75e9985c41d6f1e18d33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1997</creationdate><topic>Alleles</topic><topic>Asian People</topic><topic>B lymphocytes</topic><topic>B-Lymphocytes - immunology</topic><topic>Base Sequence</topic><topic>Behcet syndrome</topic><topic>Behcet Syndrome - etiology</topic><topic>Behcet Syndrome - genetics</topic><topic>Behcet Syndrome - immunology</topic><topic>Biological Sciences</topic><topic>Cell Line</topic><topic>Cell lines</topic><topic>Chi-Square Distribution</topic><topic>Chromosomes, Artificial, Yeast</topic><topic>Chromosomes, Human, Pair 6</topic><topic>Cosmids</topic><topic>Disease</topic><topic>DNA</topic><topic>Exons - genetics</topic><topic>Female</topic><topic>Genes</topic><topic>Genetics</topic><topic>Histocompatibility Antigens Class I - genetics</topic><topic>Histocompatibility Antigens Class I - immunology</topic><topic>HLA B antigens</topic><topic>HLA-B Antigens - genetics</topic><topic>HLA-B51 Antigen</topic><topic>Humans</topic><topic>Japan</topic><topic>Male</topic><topic>Membrane Proteins - genetics</topic><topic>Membrane Proteins - immunology</topic><topic>Mica</topic><topic>Microsatellites</topic><topic>Molecular Sequence Data</topic><topic>Phenotype</topic><topic>Polymerase chain reaction</topic><topic>Polymorphism, Genetic</topic><topic>Sequence Analysis, DNA</topic><topic>Trinucleotide Repeats - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mizuki, Nobuhisa</au><au>Ota, Masao</au><au>Kimura, Minoru</au><au>Ohno, Shigeaki</au><au>Ando, Hitoshi</au><au>Katsuyama, Yoshihiko</au><au>Yamazaki, Masaaki</au><au>Watanabe, Koji</au><au>Goto, Kaori</au><au>Nakamura, Satoshi</au><au>Bahram, Seiamak</au><au>Inoko, Hidetoshi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Triplet Repeat Polymorphism in the Transmembrane Region of the MICA Gene: A Strong Association of Six GCT Repetitions with Behçet Disease</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>1997-02-18</date><risdate>1997</risdate><volume>94</volume><issue>4</issue><spage>1298</spage><epage>1303</epage><pages>1298-1303</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><abstract>A member of a novel family of the human major histocompatibility complex (MHC) class I genes termed MIC (MHC class I chain-related genes), MICA, has been recently identified near the HLA-B gene on the short arm of human chromosome 6. The predicted amino acid sequence of the MICA chain suggests that it folds similarly to typical class I chains and may have the capacity to bind peptides or other short ligands. Therefore, MICA is predicted to have a specialized function in antigen presentation or T cell recognition. During nucleotide sequence analyses of the MICA genomic clone, we found a triplet repeat microsatellite polymorphism of (GCT/AGC)n in the transmembrane (TM) region of the MICA gene. In 68 HLA homozygous B cell lines, 5 distinct alleles of this microsatellite sequence were detected. One of them contained an additional one base insertion that created a frameshift mutation resulting in a premature termination codon in the TM region. This particular allele may encode a soluble, secreted form of the MICA molecule. In addition, we have investigated this microsatellite polymorphism in 77 Japanese patients with Behcet disease, which is known to be associated with HLA-B51. The microsatellite allele consisting of 6 repetitions of GCT/AGC was present at significantly higher frequency in the patient group (Pc = 0.00055) than in a control population. Furthermore, the (GCT/AGC)6 allele was present in all B51 positive patients and in an additional 13 B51 negative patients. These results suggest the possibility of a primary association of Behcet disease with MICA rather than HLA-B.</abstract><cop>United States</cop><pub>National Academy of Sciences of the United States of America</pub><pmid>9037047</pmid><doi>10.1073/pnas.94.4.1298</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Alleles Asian People B lymphocytes B-Lymphocytes - immunology Base Sequence Behcet syndrome Behcet Syndrome - etiology Behcet Syndrome - genetics Behcet Syndrome - immunology Biological Sciences Cell Line Cell lines Chi-Square Distribution Chromosomes, Artificial, Yeast Chromosomes, Human, Pair 6 Cosmids Disease DNA Exons - genetics Female Genes Genetics Histocompatibility Antigens Class I - genetics Histocompatibility Antigens Class I - immunology HLA B antigens HLA-B Antigens - genetics HLA-B51 Antigen Humans Japan Male Membrane Proteins - genetics Membrane Proteins - immunology Mica Microsatellites Molecular Sequence Data Phenotype Polymerase chain reaction Polymorphism, Genetic Sequence Analysis, DNA Trinucleotide Repeats - genetics |
title | Triplet Repeat Polymorphism in the Transmembrane Region of the MICA Gene: A Strong Association of Six GCT Repetitions with Behçet Disease |
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