NMR Solution Structure of Cu(I) Rusticyanin from Thiobacillus ferrooxidans: Structural Basis for the Extreme Acid Stability and Redox Potential
The solution structure of the Cu(I) form of the rusticyanin from Thiobacillus ferrooxidanshas been calculated from a total of 1979 distance and dihedral angle constraints derived from 1H, 13C and 15N NMR spectra. The structures reveal two β-sheets, one of six strands and one of seven strands that ar...
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Veröffentlicht in: | Journal of molecular biology 1996-11, Vol.263 (5), p.752-767 |
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creator | Botuyan, Maria Victoria Toy-Palmer, Anna Chung, John Blake II, Robert C. Beroza, Paul Case, David A. Dyson, H.Jane |
description | The solution structure of the Cu(I) form of the rusticyanin from
Thiobacillus ferrooxidanshas been calculated from a total of 1979 distance and dihedral angle constraints derived from
1H,
13C and
15N NMR spectra. The structures reveal two β-sheets, one of six strands and one of seven strands that are tightly packed in a β-barrel or β-sandwich arrangement, and a short helix that extends on the outside of one of the sheets to form a second hydrophobic core. The copper coordination sphere is composed of the standard type I ligands (His
2CysMet) in a distorted tetrahedral arrangement. The copper-binding site is located within a hydrophobic region at one end of the molecule, surrounded by a number of aromatic rings and hydrophobic residues. This configuration probably contributes to the acid stability of the copper site, since close association of the aromatic rings with the histidine ligands would sterically hinder their dissociation from the copper. An electrostatic analysis based on a comparison of the structures of rusticyanin and French bean plastocyanin shows that factors determining the high redox potential of rusticyanin include contributions from charged side-chains and from the disposition of backbone peptide dipoles, particularly in the 81 to 86 region of the sequence and the ligand cysteine residue. These interactions should also contribute to the acid stability by inhibiting protonation of His143. |
doi_str_mv | 10.1006/jmbi.1996.0613 |
format | Article |
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Thiobacillus ferrooxidanshas been calculated from a total of 1979 distance and dihedral angle constraints derived from
1H,
13C and
15N NMR spectra. The structures reveal two β-sheets, one of six strands and one of seven strands that are tightly packed in a β-barrel or β-sandwich arrangement, and a short helix that extends on the outside of one of the sheets to form a second hydrophobic core. The copper coordination sphere is composed of the standard type I ligands (His
2CysMet) in a distorted tetrahedral arrangement. The copper-binding site is located within a hydrophobic region at one end of the molecule, surrounded by a number of aromatic rings and hydrophobic residues. This configuration probably contributes to the acid stability of the copper site, since close association of the aromatic rings with the histidine ligands would sterically hinder their dissociation from the copper. An electrostatic analysis based on a comparison of the structures of rusticyanin and French bean plastocyanin shows that factors determining the high redox potential of rusticyanin include contributions from charged side-chains and from the disposition of backbone peptide dipoles, particularly in the 81 to 86 region of the sequence and the ligand cysteine residue. These interactions should also contribute to the acid stability by inhibiting protonation of His143.</description><identifier>ISSN: 0022-2836</identifier><identifier>EISSN: 1089-8638</identifier><identifier>DOI: 10.1006/jmbi.1996.0613</identifier><identifier>PMID: 8947573</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Azurin - analogs & derivatives ; Azurin - chemistry ; Azurin - metabolism ; Binding Sites ; Copper - metabolism ; Hydrogen-Ion Concentration ; Magnetic Resonance Spectroscopy ; Oxidation-Reduction ; rusticyanin ; solution structure ; Solutions ; Thiobacillus - chemistry ; type 1 copper protein ; X-Ray Diffraction</subject><ispartof>Journal of molecular biology, 1996-11, Vol.263 (5), p.752-767</ispartof><rights>1996 Academic Press</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1006/jmbi.1996.0613$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/8947573$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Botuyan, Maria Victoria</creatorcontrib><creatorcontrib>Toy-Palmer, Anna</creatorcontrib><creatorcontrib>Chung, John</creatorcontrib><creatorcontrib>Blake II, Robert C.</creatorcontrib><creatorcontrib>Beroza, Paul</creatorcontrib><creatorcontrib>Case, David A.</creatorcontrib><creatorcontrib>Dyson, H.Jane</creatorcontrib><title>NMR Solution Structure of Cu(I) Rusticyanin from Thiobacillus ferrooxidans: Structural Basis for the Extreme Acid Stability and Redox Potential</title><title>Journal of molecular biology</title><addtitle>J Mol Biol</addtitle><description>The solution structure of the Cu(I) form of the rusticyanin from
Thiobacillus ferrooxidanshas been calculated from a total of 1979 distance and dihedral angle constraints derived from
1H,
13C and
15N NMR spectra. The structures reveal two β-sheets, one of six strands and one of seven strands that are tightly packed in a β-barrel or β-sandwich arrangement, and a short helix that extends on the outside of one of the sheets to form a second hydrophobic core. The copper coordination sphere is composed of the standard type I ligands (His
2CysMet) in a distorted tetrahedral arrangement. The copper-binding site is located within a hydrophobic region at one end of the molecule, surrounded by a number of aromatic rings and hydrophobic residues. This configuration probably contributes to the acid stability of the copper site, since close association of the aromatic rings with the histidine ligands would sterically hinder their dissociation from the copper. An electrostatic analysis based on a comparison of the structures of rusticyanin and French bean plastocyanin shows that factors determining the high redox potential of rusticyanin include contributions from charged side-chains and from the disposition of backbone peptide dipoles, particularly in the 81 to 86 region of the sequence and the ligand cysteine residue. These interactions should also contribute to the acid stability by inhibiting protonation of His143.</description><subject>Azurin - analogs & derivatives</subject><subject>Azurin - chemistry</subject><subject>Azurin - metabolism</subject><subject>Binding Sites</subject><subject>Copper - metabolism</subject><subject>Hydrogen-Ion Concentration</subject><subject>Magnetic Resonance Spectroscopy</subject><subject>Oxidation-Reduction</subject><subject>rusticyanin</subject><subject>solution structure</subject><subject>Solutions</subject><subject>Thiobacillus - chemistry</subject><subject>type 1 copper protein</subject><subject>X-Ray Diffraction</subject><issn>0022-2836</issn><issn>1089-8638</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1996</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkT1vFDEQhi0ECpdAS4fkCkGxh73e9dp04ZRApPChS6gtf8wqjrzrxB_o7lfwl9lTTrRUU7zPjGbmQegNJWtKCP94Pxm_plLyNeGUPUMrSoRsBGfiOVoR0rZNKxh_iU5zvieE9KwTJ-hEyG7oB7ZCf75_2-KbGGrxccY3JVVbagIcR7yp768-4G3Nxdu9nv2MxxQnfHvno9HWh1AzHiGlGHfe6Tl_-teuA_6ss1_imHC5A3yxKwkmwOfWu4XSxgdf9ljPDm_BxR3-GQvMxevwCr0Ydcjw-ljP0K_Li9vN1-b6x5erzfl1A63gpQEuuQRqoJdM98s6lrd6HMC5oSc9FYOlvQHTdZxoPnDDu9Y4TZhk1HFqLTtD757mPqT4WCEXNflsIQQ9Q6xZDaKXbbu86H8g5ZR0gncL-PYIVjOBUw_JTzrt1fHVSy6ecljO-u0hqWw9zBacT2CLctErStRBqjpIVQep6iCV_QX13pXZ</recordid><startdate>19961115</startdate><enddate>19961115</enddate><creator>Botuyan, Maria Victoria</creator><creator>Toy-Palmer, Anna</creator><creator>Chung, John</creator><creator>Blake II, Robert C.</creator><creator>Beroza, Paul</creator><creator>Case, David A.</creator><creator>Dyson, H.Jane</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>19961115</creationdate><title>NMR Solution Structure of Cu(I) Rusticyanin from Thiobacillus ferrooxidans: Structural Basis for the Extreme Acid Stability and Redox Potential</title><author>Botuyan, Maria Victoria ; Toy-Palmer, Anna ; Chung, John ; Blake II, Robert C. ; Beroza, Paul ; Case, David A. ; Dyson, H.Jane</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-e286t-e6969e1be593a5bacc62af7edd7505187c15beb4460a676b642bda03931d61cc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1996</creationdate><topic>Azurin - analogs & derivatives</topic><topic>Azurin - chemistry</topic><topic>Azurin - metabolism</topic><topic>Binding Sites</topic><topic>Copper - metabolism</topic><topic>Hydrogen-Ion Concentration</topic><topic>Magnetic Resonance Spectroscopy</topic><topic>Oxidation-Reduction</topic><topic>rusticyanin</topic><topic>solution structure</topic><topic>Solutions</topic><topic>Thiobacillus - chemistry</topic><topic>type 1 copper protein</topic><topic>X-Ray Diffraction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Botuyan, Maria Victoria</creatorcontrib><creatorcontrib>Toy-Palmer, Anna</creatorcontrib><creatorcontrib>Chung, John</creatorcontrib><creatorcontrib>Blake II, Robert C.</creatorcontrib><creatorcontrib>Beroza, Paul</creatorcontrib><creatorcontrib>Case, David A.</creatorcontrib><creatorcontrib>Dyson, H.Jane</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Botuyan, Maria Victoria</au><au>Toy-Palmer, Anna</au><au>Chung, John</au><au>Blake II, Robert C.</au><au>Beroza, Paul</au><au>Case, David A.</au><au>Dyson, H.Jane</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>NMR Solution Structure of Cu(I) Rusticyanin from Thiobacillus ferrooxidans: Structural Basis for the Extreme Acid Stability and Redox Potential</atitle><jtitle>Journal of molecular biology</jtitle><addtitle>J Mol Biol</addtitle><date>1996-11-15</date><risdate>1996</risdate><volume>263</volume><issue>5</issue><spage>752</spage><epage>767</epage><pages>752-767</pages><issn>0022-2836</issn><eissn>1089-8638</eissn><abstract>The solution structure of the Cu(I) form of the rusticyanin from
Thiobacillus ferrooxidanshas been calculated from a total of 1979 distance and dihedral angle constraints derived from
1H,
13C and
15N NMR spectra. The structures reveal two β-sheets, one of six strands and one of seven strands that are tightly packed in a β-barrel or β-sandwich arrangement, and a short helix that extends on the outside of one of the sheets to form a second hydrophobic core. The copper coordination sphere is composed of the standard type I ligands (His
2CysMet) in a distorted tetrahedral arrangement. The copper-binding site is located within a hydrophobic region at one end of the molecule, surrounded by a number of aromatic rings and hydrophobic residues. This configuration probably contributes to the acid stability of the copper site, since close association of the aromatic rings with the histidine ligands would sterically hinder their dissociation from the copper. An electrostatic analysis based on a comparison of the structures of rusticyanin and French bean plastocyanin shows that factors determining the high redox potential of rusticyanin include contributions from charged side-chains and from the disposition of backbone peptide dipoles, particularly in the 81 to 86 region of the sequence and the ligand cysteine residue. These interactions should also contribute to the acid stability by inhibiting protonation of His143.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>8947573</pmid><doi>10.1006/jmbi.1996.0613</doi><tpages>16</tpages></addata></record> |
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source | MEDLINE; ScienceDirect Journals (5 years ago - present) |
subjects | Azurin - analogs & derivatives Azurin - chemistry Azurin - metabolism Binding Sites Copper - metabolism Hydrogen-Ion Concentration Magnetic Resonance Spectroscopy Oxidation-Reduction rusticyanin solution structure Solutions Thiobacillus - chemistry type 1 copper protein X-Ray Diffraction |
title | NMR Solution Structure of Cu(I) Rusticyanin from Thiobacillus ferrooxidans: Structural Basis for the Extreme Acid Stability and Redox Potential |
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