A major cysteine proteinase, EPB, in germinating barley seeds: structure of two intronless genes and regulation of expression
The barley cysteine proteinase B (EPB) is the main protease responsible for the degradation of endosperm storage proteins providing nitrogenous nutrients to support the growth of young seedlings. The expression of this enzyme is induced in the germinating seeds by the phytohormone, gibberellin, and...
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Veröffentlicht in: | Plant molecular biology 1996-05, Vol.31 (2), p.239-254 |
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description | The barley cysteine proteinase B (EPB) is the main protease responsible for the degradation of endosperm storage proteins providing nitrogenous nutrients to support the growth of young seedlings. The expression of this enzyme is induced in the germinating seeds by the phytohormone, gibberellin, and suppressed by another phytohormone, abscisic acid. In situ hybridization experiments indicate that EPB is expressed in the scutellar epithelium within 24 h of seed germination, but the aleurone tissue surrounding the starchy endosperm eventually becomes the main tissue expressing this enzyme. The EPB gene family of barley consists of two very similar genes, EPB1 and EPB2, both of which have been mapped to chromosome 3. The sequences of EPB1 and EPB2 match with the two previously published cDNA clones indicating that both genes are expressed. Interestingly, neither of these genes contain any introns, a rare phenomenon in which all members of a small gene family are active intronless genes. Sequence comparison indicates that the barley EPB family can be classified as cathepsin L-like endopeptidases and is most closely related to two legume cysteine proteinases (Phaseolus vulgaris EP-C1 and Vigna mungo SHEP) which are also involved in seed storage protein degradation. The promoters of EPB1 and EPB2 have been linked to the coding sequence of a reporter gene, GUS, encoding beta-glucuronidase, and introduced into barley aleurone cells using the particle bombardment method. Transient expression studies indicate that EPB promoters are sufficient to confer the hormonal regulation of these genes. |
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(Washington Univ., St. Louis, MO (USA). Dept. of Biology) ; Porali, I ; Cercos, M ; Ho, T.D</creator><creatorcontrib>Mikkonen, A. (Washington Univ., St. Louis, MO (USA). Dept. of Biology) ; Porali, I ; Cercos, M ; Ho, T.D</creatorcontrib><description>The barley cysteine proteinase B (EPB) is the main protease responsible for the degradation of endosperm storage proteins providing nitrogenous nutrients to support the growth of young seedlings. The expression of this enzyme is induced in the germinating seeds by the phytohormone, gibberellin, and suppressed by another phytohormone, abscisic acid. In situ hybridization experiments indicate that EPB is expressed in the scutellar epithelium within 24 h of seed germination, but the aleurone tissue surrounding the starchy endosperm eventually becomes the main tissue expressing this enzyme. The EPB gene family of barley consists of two very similar genes, EPB1 and EPB2, both of which have been mapped to chromosome 3. The sequences of EPB1 and EPB2 match with the two previously published cDNA clones indicating that both genes are expressed. Interestingly, neither of these genes contain any introns, a rare phenomenon in which all members of a small gene family are active intronless genes. Sequence comparison indicates that the barley EPB family can be classified as cathepsin L-like endopeptidases and is most closely related to two legume cysteine proteinases (Phaseolus vulgaris EP-C1 and Vigna mungo SHEP) which are also involved in seed storage protein degradation. The promoters of EPB1 and EPB2 have been linked to the coding sequence of a reporter gene, GUS, encoding beta-glucuronidase, and introduced into barley aleurone cells using the particle bombardment method. Transient expression studies indicate that EPB promoters are sufficient to confer the hormonal regulation of these genes.</description><identifier>ISSN: 0167-4412</identifier><identifier>EISSN: 1573-5028</identifier><identifier>DOI: 10.1007/BF00021787</identifier><identifier>PMID: 8756590</identifier><language>eng</language><publisher>Netherlands</publisher><subject>Amino Acid Sequence ; Base Sequence ; Chromosome Mapping ; CISTEINA ; CODE GENETIQUE ; CODIGO GENETICO ; CYSTEINE ; Cysteine Endopeptidases - genetics ; EXPRESION GENICA ; EXPRESSION DES GENES ; GENE EXPRESSION ; Gene Expression Regulation, Developmental ; Gene Expression Regulation, Enzymologic ; Gene Expression Regulation, Plant ; Genes, Plant ; GENETIC CODE ; GERMINACION ; GERMINATION ; GRAINE ; Hordeum - enzymology ; Hordeum - genetics ; HORDEUM VULGARE ; In Situ Hybridization ; Introns ; Molecular Sequence Data ; Phylogeny ; Plant Proteins ; Promoter Regions, Genetic ; PROTEASAS ; PROTEASE ; PROTEASES ; RNA, Messenger - genetics ; RNA, Plant - genetics ; SEEDS ; SEMILLA ; Sequence Homology, Amino Acid ; Transcription, Genetic</subject><ispartof>Plant molecular biology, 1996-05, Vol.31 (2), p.239-254</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c332t-edf9ee4ce771b0ddc904640377dc056eaebfcb4c6d99ffe22e2ec77af475a5d83</citedby><cites>FETCH-LOGICAL-c332t-edf9ee4ce771b0ddc904640377dc056eaebfcb4c6d99ffe22e2ec77af475a5d83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/8756590$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mikkonen, A. (Washington Univ., St. Louis, MO (USA). Dept. of Biology)</creatorcontrib><creatorcontrib>Porali, I</creatorcontrib><creatorcontrib>Cercos, M</creatorcontrib><creatorcontrib>Ho, T.D</creatorcontrib><title>A major cysteine proteinase, EPB, in germinating barley seeds: structure of two intronless genes and regulation of expression</title><title>Plant molecular biology</title><addtitle>Plant Mol Biol</addtitle><description>The barley cysteine proteinase B (EPB) is the main protease responsible for the degradation of endosperm storage proteins providing nitrogenous nutrients to support the growth of young seedlings. The expression of this enzyme is induced in the germinating seeds by the phytohormone, gibberellin, and suppressed by another phytohormone, abscisic acid. In situ hybridization experiments indicate that EPB is expressed in the scutellar epithelium within 24 h of seed germination, but the aleurone tissue surrounding the starchy endosperm eventually becomes the main tissue expressing this enzyme. The EPB gene family of barley consists of two very similar genes, EPB1 and EPB2, both of which have been mapped to chromosome 3. The sequences of EPB1 and EPB2 match with the two previously published cDNA clones indicating that both genes are expressed. Interestingly, neither of these genes contain any introns, a rare phenomenon in which all members of a small gene family are active intronless genes. Sequence comparison indicates that the barley EPB family can be classified as cathepsin L-like endopeptidases and is most closely related to two legume cysteine proteinases (Phaseolus vulgaris EP-C1 and Vigna mungo SHEP) which are also involved in seed storage protein degradation. The promoters of EPB1 and EPB2 have been linked to the coding sequence of a reporter gene, GUS, encoding beta-glucuronidase, and introduced into barley aleurone cells using the particle bombardment method. Transient expression studies indicate that EPB promoters are sufficient to confer the hormonal regulation of these genes.</description><subject>Amino Acid Sequence</subject><subject>Base Sequence</subject><subject>Chromosome Mapping</subject><subject>CISTEINA</subject><subject>CODE GENETIQUE</subject><subject>CODIGO GENETICO</subject><subject>CYSTEINE</subject><subject>Cysteine Endopeptidases - genetics</subject><subject>EXPRESION GENICA</subject><subject>EXPRESSION DES GENES</subject><subject>GENE EXPRESSION</subject><subject>Gene Expression Regulation, Developmental</subject><subject>Gene Expression Regulation, Enzymologic</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes, Plant</subject><subject>GENETIC CODE</subject><subject>GERMINACION</subject><subject>GERMINATION</subject><subject>GRAINE</subject><subject>Hordeum - enzymology</subject><subject>Hordeum - genetics</subject><subject>HORDEUM VULGARE</subject><subject>In Situ Hybridization</subject><subject>Introns</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Plant Proteins</subject><subject>Promoter Regions, Genetic</subject><subject>PROTEASAS</subject><subject>PROTEASE</subject><subject>PROTEASES</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Plant - genetics</subject><subject>SEEDS</subject><subject>SEMILLA</subject><subject>Sequence Homology, Amino Acid</subject><subject>Transcription, Genetic</subject><issn>0167-4412</issn><issn>1573-5028</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1996</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1LxDAQxYMoun5cPApCTh7E6rRNm9abil-wqAc9lzSZLJW2WTMtugf_d7PsokdPSeb93oPJY-wwhvMYQF5c3wFAEstCbrBJnMk0yiApNtkE4lxGQsTJDtslegcIeJpvs-1CZnlWwoR9X_FOvTvP9YIGbHrkc--WF0V4xm9frs940_MZ-i6Mhqaf8Vr5FhecEA1dchr8qIfRI3eWD58u0IN3fYtEwdUjcdUb7nE2tsHu-iWGX3Mf9PDaZ1tWtYQH63OPvd3dvt48RNPn-8ebq2mk0zQZIjS2RBQapYxrMEaXIHIBqZRGQ5ajwtrqWujclKW1mCSYoJZSWSEzlZki3WMnq9yw3MeINFRdQxrbVvXoRqpkkYhS5uW_YPjcHAohAni6ArV3RB5tNfdNp_yiiqFallL9lRLg43XqWHdoftF1C0E_WulWuUrNfEPV07SUwQ9F-gMWF5GN</recordid><startdate>19960501</startdate><enddate>19960501</enddate><creator>Mikkonen, A. 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Dept. of Biology) ; Porali, I ; Cercos, M ; Ho, T.D</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c332t-edf9ee4ce771b0ddc904640377dc056eaebfcb4c6d99ffe22e2ec77af475a5d83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1996</creationdate><topic>Amino Acid Sequence</topic><topic>Base Sequence</topic><topic>Chromosome Mapping</topic><topic>CISTEINA</topic><topic>CODE GENETIQUE</topic><topic>CODIGO GENETICO</topic><topic>CYSTEINE</topic><topic>Cysteine Endopeptidases - genetics</topic><topic>EXPRESION GENICA</topic><topic>EXPRESSION DES GENES</topic><topic>GENE EXPRESSION</topic><topic>Gene Expression Regulation, Developmental</topic><topic>Gene Expression Regulation, Enzymologic</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes, Plant</topic><topic>GENETIC CODE</topic><topic>GERMINACION</topic><topic>GERMINATION</topic><topic>GRAINE</topic><topic>Hordeum - enzymology</topic><topic>Hordeum - genetics</topic><topic>HORDEUM VULGARE</topic><topic>In Situ Hybridization</topic><topic>Introns</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Plant Proteins</topic><topic>Promoter Regions, Genetic</topic><topic>PROTEASAS</topic><topic>PROTEASE</topic><topic>PROTEASES</topic><topic>RNA, Messenger - genetics</topic><topic>RNA, Plant - genetics</topic><topic>SEEDS</topic><topic>SEMILLA</topic><topic>Sequence Homology, Amino Acid</topic><topic>Transcription, Genetic</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mikkonen, A. (Washington Univ., St. Louis, MO (USA). Dept. of Biology)</creatorcontrib><creatorcontrib>Porali, I</creatorcontrib><creatorcontrib>Cercos, M</creatorcontrib><creatorcontrib>Ho, T.D</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Plant molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mikkonen, A. (Washington Univ., St. Louis, MO (USA). Dept. of Biology)</au><au>Porali, I</au><au>Cercos, M</au><au>Ho, T.D</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A major cysteine proteinase, EPB, in germinating barley seeds: structure of two intronless genes and regulation of expression</atitle><jtitle>Plant molecular biology</jtitle><addtitle>Plant Mol Biol</addtitle><date>1996-05-01</date><risdate>1996</risdate><volume>31</volume><issue>2</issue><spage>239</spage><epage>254</epage><pages>239-254</pages><issn>0167-4412</issn><eissn>1573-5028</eissn><abstract>The barley cysteine proteinase B (EPB) is the main protease responsible for the degradation of endosperm storage proteins providing nitrogenous nutrients to support the growth of young seedlings. The expression of this enzyme is induced in the germinating seeds by the phytohormone, gibberellin, and suppressed by another phytohormone, abscisic acid. In situ hybridization experiments indicate that EPB is expressed in the scutellar epithelium within 24 h of seed germination, but the aleurone tissue surrounding the starchy endosperm eventually becomes the main tissue expressing this enzyme. The EPB gene family of barley consists of two very similar genes, EPB1 and EPB2, both of which have been mapped to chromosome 3. The sequences of EPB1 and EPB2 match with the two previously published cDNA clones indicating that both genes are expressed. Interestingly, neither of these genes contain any introns, a rare phenomenon in which all members of a small gene family are active intronless genes. Sequence comparison indicates that the barley EPB family can be classified as cathepsin L-like endopeptidases and is most closely related to two legume cysteine proteinases (Phaseolus vulgaris EP-C1 and Vigna mungo SHEP) which are also involved in seed storage protein degradation. The promoters of EPB1 and EPB2 have been linked to the coding sequence of a reporter gene, GUS, encoding beta-glucuronidase, and introduced into barley aleurone cells using the particle bombardment method. Transient expression studies indicate that EPB promoters are sufficient to confer the hormonal regulation of these genes.</abstract><cop>Netherlands</cop><pmid>8756590</pmid><doi>10.1007/BF00021787</doi><tpages>16</tpages></addata></record> |
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subjects | Amino Acid Sequence Base Sequence Chromosome Mapping CISTEINA CODE GENETIQUE CODIGO GENETICO CYSTEINE Cysteine Endopeptidases - genetics EXPRESION GENICA EXPRESSION DES GENES GENE EXPRESSION Gene Expression Regulation, Developmental Gene Expression Regulation, Enzymologic Gene Expression Regulation, Plant Genes, Plant GENETIC CODE GERMINACION GERMINATION GRAINE Hordeum - enzymology Hordeum - genetics HORDEUM VULGARE In Situ Hybridization Introns Molecular Sequence Data Phylogeny Plant Proteins Promoter Regions, Genetic PROTEASAS PROTEASE PROTEASES RNA, Messenger - genetics RNA, Plant - genetics SEEDS SEMILLA Sequence Homology, Amino Acid Transcription, Genetic |
title | A major cysteine proteinase, EPB, in germinating barley seeds: structure of two intronless genes and regulation of expression |
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