Stabilization of collagen fibrils by hydroxyproline

The substitution of hydroxyproline for proline in position Y of the repeating Gly-X-Y tripeptide sequence of collagen-like poly(tripeptide)s (i.e., in the position in which Hyp occurs naturally) is predicted to enhance the stability of aggregates of triple helices, while the substitution of Hyp in p...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Biochemistry (Easton) 1986-06, Vol.25 (11), p.3184-3188
Hauptverfasser: Nemethy, George, Scheraga, Harold A
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 3188
container_issue 11
container_start_page 3184
container_title Biochemistry (Easton)
container_volume 25
creator Nemethy, George
Scheraga, Harold A
description The substitution of hydroxyproline for proline in position Y of the repeating Gly-X-Y tripeptide sequence of collagen-like poly(tripeptide)s (i.e., in the position in which Hyp occurs naturally) is predicted to enhance the stability of aggregates of triple helices, while the substitution of Hyp in position X (where no Hyp occurs naturally) is predicted to decrease the stability of aggregates. Earlier conformational energy computations have indicated that two triple helices composed of poly(Gly-Pro-Pro) polypeptide chains pack preferentially with a nearly parallel orientation of the helix axes [Nemethy, G., & Scheraga, H.A. (1984) Biopolymers 23, 2781-2799]. Conformational energy computations reported here indicate that the same packing arrangement is preferred for the packing of two poly(Gly-Pro-Hyp) triple helices. The OH groups of the Hyp residues can be accommodated in the space between the two packed triple helices without any steric hindrance. They actually contribute about 1.9 kcal/mol per Gly-Pro-Hyp tripeptide to the packing energy, as a result of the formation of weak hydrogen bonds and other favorable noncovalent interatomic interactions. On the other hand, the substitution of Hyp in position X weakens the packing by about 1.7 kcal/mol per Gly-Hyp-Pro tripeptide. Numerous published experimental studies have established that Hyp in position Y stabilizes an isolated triple helix relative to dissociated random coils, while Hyp in position X has the opposite effect. We propose that Hyp in position Y also enhances the stability of the assembly of collagen into microfibrils while, in position X, it decreases this stability.
doi_str_mv 10.1021/bi00359a016
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_76937011</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>76937011</sourcerecordid><originalsourceid>FETCH-LOGICAL-a395t-2fe9d3c062d349373ae328a2cf9820bd3895b83b338e408054779b5df11182103</originalsourceid><addsrcrecordid>eNqFkM1Lw0AQxRdRaq2ePAs5iB4kOvuVZI9StApFK614XHaTjW5Nk7qbQutf75aW4kHwNAzvN29mHkKnGK4xEHyjLQDlQgFO9lAXcwIxE4Lvoy4AJDERCRyiI--noWWQsg7q0JSGEdZFdNwqbSv7rVrb1FFTRnlTVerd1FFptbOVj_Qq-lgVrlmu5q6pbG2O0UGpKm9OtrWHXu_vJv2HePg8eOzfDmNFBW9jUhpR0BwSUlAmwkZlKMkUyUuREdAFzQTXGdWUZoZBBpylqdC8KDHGGcFAe-hi4xv2fi2Mb-XM-tyE82rTLLxMk-AKGP8LYsY4E4QH8GoD5q7x3plSzp2dKbeSGOQ6S_kry0CfbW0XemaKHbsNL-jnW135XFWlU3Vu_Q4LH6WMrW3iDWZ9a5Y7WblPmaQ05XIyGsvR2-Ap4y9jSQJ_ueFV7uW0Wbg6hPzngT8vnZTE</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>14454925</pqid></control><display><type>article</type><title>Stabilization of collagen fibrils by hydroxyproline</title><source>MEDLINE</source><source>ACS Publications</source><creator>Nemethy, George ; Scheraga, Harold A</creator><creatorcontrib>Nemethy, George ; Scheraga, Harold A</creatorcontrib><description>The substitution of hydroxyproline for proline in position Y of the repeating Gly-X-Y tripeptide sequence of collagen-like poly(tripeptide)s (i.e., in the position in which Hyp occurs naturally) is predicted to enhance the stability of aggregates of triple helices, while the substitution of Hyp in position X (where no Hyp occurs naturally) is predicted to decrease the stability of aggregates. Earlier conformational energy computations have indicated that two triple helices composed of poly(Gly-Pro-Pro) polypeptide chains pack preferentially with a nearly parallel orientation of the helix axes [Nemethy, G., &amp; Scheraga, H.A. (1984) Biopolymers 23, 2781-2799]. Conformational energy computations reported here indicate that the same packing arrangement is preferred for the packing of two poly(Gly-Pro-Hyp) triple helices. The OH groups of the Hyp residues can be accommodated in the space between the two packed triple helices without any steric hindrance. They actually contribute about 1.9 kcal/mol per Gly-Pro-Hyp tripeptide to the packing energy, as a result of the formation of weak hydrogen bonds and other favorable noncovalent interatomic interactions. On the other hand, the substitution of Hyp in position X weakens the packing by about 1.7 kcal/mol per Gly-Hyp-Pro tripeptide. Numerous published experimental studies have established that Hyp in position Y stabilizes an isolated triple helix relative to dissociated random coils, while Hyp in position X has the opposite effect. We propose that Hyp in position Y also enhances the stability of the assembly of collagen into microfibrils while, in position X, it decreases this stability.</description><identifier>ISSN: 0006-2960</identifier><identifier>EISSN: 1520-4995</identifier><identifier>DOI: 10.1021/bi00359a016</identifier><identifier>PMID: 3730354</identifier><language>eng</language><publisher>Washington, DC: American Chemical Society</publisher><subject>4-hydroxy-L-proline ; Amino Acid Sequence ; Biological and medical sciences ; Collagen ; Drug Stability ; Fundamental and applied biological sciences. Psychology ; Hydroxyproline ; Models, Molecular ; Molecular biophysics ; Peptides ; Proline ; Protein Conformation ; Structure in molecular biology ; Tridimensional structure</subject><ispartof>Biochemistry (Easton), 1986-06, Vol.25 (11), p.3184-3188</ispartof><rights>1987 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a395t-2fe9d3c062d349373ae328a2cf9820bd3895b83b338e408054779b5df11182103</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/bi00359a016$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/bi00359a016$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,778,782,2754,27065,27913,27914,56727,56777</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=8057446$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/3730354$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nemethy, George</creatorcontrib><creatorcontrib>Scheraga, Harold A</creatorcontrib><title>Stabilization of collagen fibrils by hydroxyproline</title><title>Biochemistry (Easton)</title><addtitle>Biochemistry</addtitle><description>The substitution of hydroxyproline for proline in position Y of the repeating Gly-X-Y tripeptide sequence of collagen-like poly(tripeptide)s (i.e., in the position in which Hyp occurs naturally) is predicted to enhance the stability of aggregates of triple helices, while the substitution of Hyp in position X (where no Hyp occurs naturally) is predicted to decrease the stability of aggregates. Earlier conformational energy computations have indicated that two triple helices composed of poly(Gly-Pro-Pro) polypeptide chains pack preferentially with a nearly parallel orientation of the helix axes [Nemethy, G., &amp; Scheraga, H.A. (1984) Biopolymers 23, 2781-2799]. Conformational energy computations reported here indicate that the same packing arrangement is preferred for the packing of two poly(Gly-Pro-Hyp) triple helices. The OH groups of the Hyp residues can be accommodated in the space between the two packed triple helices without any steric hindrance. They actually contribute about 1.9 kcal/mol per Gly-Pro-Hyp tripeptide to the packing energy, as a result of the formation of weak hydrogen bonds and other favorable noncovalent interatomic interactions. On the other hand, the substitution of Hyp in position X weakens the packing by about 1.7 kcal/mol per Gly-Hyp-Pro tripeptide. Numerous published experimental studies have established that Hyp in position Y stabilizes an isolated triple helix relative to dissociated random coils, while Hyp in position X has the opposite effect. We propose that Hyp in position Y also enhances the stability of the assembly of collagen into microfibrils while, in position X, it decreases this stability.</description><subject>4-hydroxy-L-proline</subject><subject>Amino Acid Sequence</subject><subject>Biological and medical sciences</subject><subject>Collagen</subject><subject>Drug Stability</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Hydroxyproline</subject><subject>Models, Molecular</subject><subject>Molecular biophysics</subject><subject>Peptides</subject><subject>Proline</subject><subject>Protein Conformation</subject><subject>Structure in molecular biology</subject><subject>Tridimensional structure</subject><issn>0006-2960</issn><issn>1520-4995</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1986</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkM1Lw0AQxRdRaq2ePAs5iB4kOvuVZI9StApFK614XHaTjW5Nk7qbQutf75aW4kHwNAzvN29mHkKnGK4xEHyjLQDlQgFO9lAXcwIxE4Lvoy4AJDERCRyiI--noWWQsg7q0JSGEdZFdNwqbSv7rVrb1FFTRnlTVerd1FFptbOVj_Qq-lgVrlmu5q6pbG2O0UGpKm9OtrWHXu_vJv2HePg8eOzfDmNFBW9jUhpR0BwSUlAmwkZlKMkUyUuREdAFzQTXGdWUZoZBBpylqdC8KDHGGcFAe-hi4xv2fi2Mb-XM-tyE82rTLLxMk-AKGP8LYsY4E4QH8GoD5q7x3plSzp2dKbeSGOQ6S_kry0CfbW0XemaKHbsNL-jnW135XFWlU3Vu_Q4LH6WMrW3iDWZ9a5Y7WblPmaQ05XIyGsvR2-Ap4y9jSQJ_ueFV7uW0Wbg6hPzngT8vnZTE</recordid><startdate>19860603</startdate><enddate>19860603</enddate><creator>Nemethy, George</creator><creator>Scheraga, Harold A</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>19860603</creationdate><title>Stabilization of collagen fibrils by hydroxyproline</title><author>Nemethy, George ; Scheraga, Harold A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a395t-2fe9d3c062d349373ae328a2cf9820bd3895b83b338e408054779b5df11182103</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1986</creationdate><topic>4-hydroxy-L-proline</topic><topic>Amino Acid Sequence</topic><topic>Biological and medical sciences</topic><topic>Collagen</topic><topic>Drug Stability</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Hydroxyproline</topic><topic>Models, Molecular</topic><topic>Molecular biophysics</topic><topic>Peptides</topic><topic>Proline</topic><topic>Protein Conformation</topic><topic>Structure in molecular biology</topic><topic>Tridimensional structure</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nemethy, George</creatorcontrib><creatorcontrib>Scheraga, Harold A</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>Biochemistry (Easton)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nemethy, George</au><au>Scheraga, Harold A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Stabilization of collagen fibrils by hydroxyproline</atitle><jtitle>Biochemistry (Easton)</jtitle><addtitle>Biochemistry</addtitle><date>1986-06-03</date><risdate>1986</risdate><volume>25</volume><issue>11</issue><spage>3184</spage><epage>3188</epage><pages>3184-3188</pages><issn>0006-2960</issn><eissn>1520-4995</eissn><abstract>The substitution of hydroxyproline for proline in position Y of the repeating Gly-X-Y tripeptide sequence of collagen-like poly(tripeptide)s (i.e., in the position in which Hyp occurs naturally) is predicted to enhance the stability of aggregates of triple helices, while the substitution of Hyp in position X (where no Hyp occurs naturally) is predicted to decrease the stability of aggregates. Earlier conformational energy computations have indicated that two triple helices composed of poly(Gly-Pro-Pro) polypeptide chains pack preferentially with a nearly parallel orientation of the helix axes [Nemethy, G., &amp; Scheraga, H.A. (1984) Biopolymers 23, 2781-2799]. Conformational energy computations reported here indicate that the same packing arrangement is preferred for the packing of two poly(Gly-Pro-Hyp) triple helices. The OH groups of the Hyp residues can be accommodated in the space between the two packed triple helices without any steric hindrance. They actually contribute about 1.9 kcal/mol per Gly-Pro-Hyp tripeptide to the packing energy, as a result of the formation of weak hydrogen bonds and other favorable noncovalent interatomic interactions. On the other hand, the substitution of Hyp in position X weakens the packing by about 1.7 kcal/mol per Gly-Hyp-Pro tripeptide. Numerous published experimental studies have established that Hyp in position Y stabilizes an isolated triple helix relative to dissociated random coils, while Hyp in position X has the opposite effect. We propose that Hyp in position Y also enhances the stability of the assembly of collagen into microfibrils while, in position X, it decreases this stability.</abstract><cop>Washington, DC</cop><pub>American Chemical Society</pub><pmid>3730354</pmid><doi>10.1021/bi00359a016</doi><tpages>5</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0006-2960
ispartof Biochemistry (Easton), 1986-06, Vol.25 (11), p.3184-3188
issn 0006-2960
1520-4995
language eng
recordid cdi_proquest_miscellaneous_76937011
source MEDLINE; ACS Publications
subjects 4-hydroxy-L-proline
Amino Acid Sequence
Biological and medical sciences
Collagen
Drug Stability
Fundamental and applied biological sciences. Psychology
Hydroxyproline
Models, Molecular
Molecular biophysics
Peptides
Proline
Protein Conformation
Structure in molecular biology
Tridimensional structure
title Stabilization of collagen fibrils by hydroxyproline
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-15T10%3A06%3A01IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Stabilization%20of%20collagen%20fibrils%20by%20hydroxyproline&rft.jtitle=Biochemistry%20(Easton)&rft.au=Nemethy,%20George&rft.date=1986-06-03&rft.volume=25&rft.issue=11&rft.spage=3184&rft.epage=3188&rft.pages=3184-3188&rft.issn=0006-2960&rft.eissn=1520-4995&rft_id=info:doi/10.1021/bi00359a016&rft_dat=%3Cproquest_cross%3E76937011%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=14454925&rft_id=info:pmid/3730354&rfr_iscdi=true