Spoligotypes of Mycobacterium tuberculosis from Different Provinces of China
A total of 2,346 Mycobacterium tuberculosis isolates from 13 provinces in China were genotyped by spoligotyping. Two hundred seventy-eight spoligotypes were identified: 2,153 isolates were grouped into 85 clusters, and the remaining 193 isolates were orphans. Comparison with the SpolDB4.0 database r...
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| Veröffentlicht in: | Journal of Clinical Microbiology 2010-11, Vol.48 (11), p.4102-4106 |
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| container_title | Journal of Clinical Microbiology |
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| creator | Dong, Haiyan Liu, Zhiguang Lv, Bing Zhang, Yuanyuan Liu, Jie Zhao, Xiuqin Liu, Jinghua Wan, Kanglin |
| description | A total of 2,346 Mycobacterium tuberculosis isolates from 13 provinces in China were genotyped by spoligotyping. Two hundred seventy-eight spoligotypes were identified: 2,153 isolates were grouped into 85 clusters, and the remaining 193 isolates were orphans. Comparison with the SpolDB4.0 database revealed that 118 spoligotypes had shared international type numbers in the database and the other 160 were novel. These 160 novel spoligotypes were assigned to families and subfamilies using the SpotClust program. The most prevalent family was the Beijing family (74.08%), followed by the T family (14.11%). CAS family strains were found only in the Xinjiang and Tibet regions, while EAI family strains were found only in Fujian Province. In conclusion, the present study of the M. tuberculosis population in China demonstrated that Beijing family isolates are the most prevalent strains in China and that they exhibit geographical variation. Furthermore, many new spoligotypes were found in this study. |
| doi_str_mv | 10.1128/JCM.00549-10 |
| format | Article |
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Two hundred seventy-eight spoligotypes were identified: 2,153 isolates were grouped into 85 clusters, and the remaining 193 isolates were orphans. Comparison with the SpolDB4.0 database revealed that 118 spoligotypes had shared international type numbers in the database and the other 160 were novel. These 160 novel spoligotypes were assigned to families and subfamilies using the SpotClust program. The most prevalent family was the Beijing family (74.08%), followed by the T family (14.11%). CAS family strains were found only in the Xinjiang and Tibet regions, while EAI family strains were found only in Fujian Province. In conclusion, the present study of the M. tuberculosis population in China demonstrated that Beijing family isolates are the most prevalent strains in China and that they exhibit geographical variation. Furthermore, many new spoligotypes were found in this study.</description><identifier>ISSN: 0095-1137</identifier><identifier>EISSN: 1098-660X</identifier><identifier>DOI: 10.1128/JCM.00549-10</identifier><identifier>PMID: 20739484</identifier><identifier>CODEN: JCMIDW</identifier><language>eng</language><publisher>Washington, DC: American Society for Microbiology</publisher><subject>Bacterial Typing Techniques ; Bacteriology ; Biological and medical sciences ; China - epidemiology ; DNA Fingerprinting ; DNA, Bacterial - genetics ; Fundamental and applied biological sciences. Psychology ; Genotype ; Humans ; Microbiology ; Miscellaneous ; Molecular Epidemiology - methods ; Mycobacteriology and Aerobic Actinomycetes ; Mycobacterium tuberculosis ; Mycobacterium tuberculosis - classification ; Mycobacterium tuberculosis - genetics ; Mycobacterium tuberculosis - isolation & purification ; Tuberculosis - epidemiology ; Tuberculosis - microbiology</subject><ispartof>Journal of Clinical Microbiology, 2010-11, Vol.48 (11), p.4102-4106</ispartof><rights>2015 INIST-CNRS</rights><rights>Copyright © 2010, American Society for Microbiology 2010</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c496t-c8441d0fbd523847e381a3445beacd6da0b6f706a3b926887ed12066dc16c1ef3</citedby><cites>FETCH-LOGICAL-c496t-c8441d0fbd523847e381a3445beacd6da0b6f706a3b926887ed12066dc16c1ef3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020837/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020837/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,3188,3189,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=23475453$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20739484$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Dong, Haiyan</creatorcontrib><creatorcontrib>Liu, Zhiguang</creatorcontrib><creatorcontrib>Lv, Bing</creatorcontrib><creatorcontrib>Zhang, Yuanyuan</creatorcontrib><creatorcontrib>Liu, Jie</creatorcontrib><creatorcontrib>Zhao, Xiuqin</creatorcontrib><creatorcontrib>Liu, Jinghua</creatorcontrib><creatorcontrib>Wan, Kanglin</creatorcontrib><title>Spoligotypes of Mycobacterium tuberculosis from Different Provinces of China</title><title>Journal of Clinical Microbiology</title><addtitle>J Clin Microbiol</addtitle><description>A total of 2,346 Mycobacterium tuberculosis isolates from 13 provinces in China were genotyped by spoligotyping. Two hundred seventy-eight spoligotypes were identified: 2,153 isolates were grouped into 85 clusters, and the remaining 193 isolates were orphans. Comparison with the SpolDB4.0 database revealed that 118 spoligotypes had shared international type numbers in the database and the other 160 were novel. These 160 novel spoligotypes were assigned to families and subfamilies using the SpotClust program. The most prevalent family was the Beijing family (74.08%), followed by the T family (14.11%). CAS family strains were found only in the Xinjiang and Tibet regions, while EAI family strains were found only in Fujian Province. In conclusion, the present study of the M. tuberculosis population in China demonstrated that Beijing family isolates are the most prevalent strains in China and that they exhibit geographical variation. Furthermore, many new spoligotypes were found in this study.</description><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>China - epidemiology</subject><subject>DNA Fingerprinting</subject><subject>DNA, Bacterial - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genotype</subject><subject>Humans</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Epidemiology - methods</subject><subject>Mycobacteriology and Aerobic Actinomycetes</subject><subject>Mycobacterium tuberculosis</subject><subject>Mycobacterium tuberculosis - classification</subject><subject>Mycobacterium tuberculosis - genetics</subject><subject>Mycobacterium tuberculosis - isolation & purification</subject><subject>Tuberculosis - epidemiology</subject><subject>Tuberculosis - microbiology</subject><issn>0095-1137</issn><issn>1098-660X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0s9rFDEUB_Agit1Wb551EKQXp75MfkxyEWS1WtmiUAveQiaT7KbMTLbJTMv-96bO2urJUyD55OU9vkHoBYYTjCvx7uvy_ASAUVlieIQWGKQoOYefj9ECQLISY1IfoMOUrgAwpYw9RQcV1ERSQRdodbENnV-Hcbe1qQiuON-Z0Ggz2uinvhinxkYzdSH5VLgY-uKjd85GO4zF9xhu_GDma8uNH_Qz9MTpLtnn-_UIXZ5--rH8Uq6-fT5bfliVhko-lkZQiltwTcsqImhticCa5NYaq03LWw0NdzVwTRpZcSFq2-IKOG8N5gZbR47Q-7nudmp625rcTdSd2kbf67hTQXv178ngN2odbhSBCgSpc4HjfYEYriebRtX7ZGzX6cGGKSmBGaO05tV_ZTa0lhJklm9naWJIKVp33w8GdZeUykmp30nlncxf_j3DPf4TTQZv9kAnozsX9WB8enCE1owykt3r2W38enPro1U69erK9IqK_K6iGO7GeDUjp4PS65gLXV5UgAlgCflPSPIL6LqxHA</recordid><startdate>20101101</startdate><enddate>20101101</enddate><creator>Dong, Haiyan</creator><creator>Liu, Zhiguang</creator><creator>Lv, Bing</creator><creator>Zhang, Yuanyuan</creator><creator>Liu, Jie</creator><creator>Zhao, Xiuqin</creator><creator>Liu, Jinghua</creator><creator>Wan, Kanglin</creator><general>American Society for Microbiology</general><general>American Society for Microbiology (ASM)</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QL</scope><scope>C1K</scope><scope>5PM</scope></search><sort><creationdate>20101101</creationdate><title>Spoligotypes of Mycobacterium tuberculosis from Different Provinces of China</title><author>Dong, Haiyan ; Liu, Zhiguang ; Lv, Bing ; Zhang, Yuanyuan ; Liu, Jie ; Zhao, Xiuqin ; Liu, Jinghua ; Wan, Kanglin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c496t-c8441d0fbd523847e381a3445beacd6da0b6f706a3b926887ed12066dc16c1ef3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>China - epidemiology</topic><topic>DNA Fingerprinting</topic><topic>DNA, Bacterial - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genotype</topic><topic>Humans</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Epidemiology - methods</topic><topic>Mycobacteriology and Aerobic Actinomycetes</topic><topic>Mycobacterium tuberculosis</topic><topic>Mycobacterium tuberculosis - classification</topic><topic>Mycobacterium tuberculosis - genetics</topic><topic>Mycobacterium tuberculosis - isolation & purification</topic><topic>Tuberculosis - epidemiology</topic><topic>Tuberculosis - microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Dong, Haiyan</creatorcontrib><creatorcontrib>Liu, Zhiguang</creatorcontrib><creatorcontrib>Lv, Bing</creatorcontrib><creatorcontrib>Zhang, Yuanyuan</creatorcontrib><creatorcontrib>Liu, Jie</creatorcontrib><creatorcontrib>Zhao, Xiuqin</creatorcontrib><creatorcontrib>Liu, Jinghua</creatorcontrib><creatorcontrib>Wan, Kanglin</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of Clinical Microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Dong, Haiyan</au><au>Liu, Zhiguang</au><au>Lv, Bing</au><au>Zhang, Yuanyuan</au><au>Liu, Jie</au><au>Zhao, Xiuqin</au><au>Liu, Jinghua</au><au>Wan, Kanglin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spoligotypes of Mycobacterium tuberculosis from Different Provinces of China</atitle><jtitle>Journal of Clinical Microbiology</jtitle><addtitle>J Clin Microbiol</addtitle><date>2010-11-01</date><risdate>2010</risdate><volume>48</volume><issue>11</issue><spage>4102</spage><epage>4106</epage><pages>4102-4106</pages><issn>0095-1137</issn><eissn>1098-660X</eissn><coden>JCMIDW</coden><abstract>A total of 2,346 Mycobacterium tuberculosis isolates from 13 provinces in China were genotyped by spoligotyping. Two hundred seventy-eight spoligotypes were identified: 2,153 isolates were grouped into 85 clusters, and the remaining 193 isolates were orphans. Comparison with the SpolDB4.0 database revealed that 118 spoligotypes had shared international type numbers in the database and the other 160 were novel. These 160 novel spoligotypes were assigned to families and subfamilies using the SpotClust program. The most prevalent family was the Beijing family (74.08%), followed by the T family (14.11%). CAS family strains were found only in the Xinjiang and Tibet regions, while EAI family strains were found only in Fujian Province. In conclusion, the present study of the M. tuberculosis population in China demonstrated that Beijing family isolates are the most prevalent strains in China and that they exhibit geographical variation. 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| subjects | Bacterial Typing Techniques Bacteriology Biological and medical sciences China - epidemiology DNA Fingerprinting DNA, Bacterial - genetics Fundamental and applied biological sciences. Psychology Genotype Humans Microbiology Miscellaneous Molecular Epidemiology - methods Mycobacteriology and Aerobic Actinomycetes Mycobacterium tuberculosis Mycobacterium tuberculosis - classification Mycobacterium tuberculosis - genetics Mycobacterium tuberculosis - isolation & purification Tuberculosis - epidemiology Tuberculosis - microbiology |
| title | Spoligotypes of Mycobacterium tuberculosis from Different Provinces of China |
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