Rapid match-searching for gene silencing assessment

Motivation: Gene silencing, also called RNA interference, requires reliable assessment of silencer impacts. A critical task is to find matches between silencer oligomers and sites in the genome, in accordance with one-to-many matching rules (G–U matching, with provision for mismatches). Fast search...

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Veröffentlicht in:	Bioinformatics 2010-08, Vol.26 (16), p.1932-1937, Article 1932
Hauptverfasser:	Horn, Mark E.T., Waterhouse, Peter M.
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Assessments Bioinformatics Biological and medical sciences Databases, Nucleic Acid Fundamental and applied biological sciences. Psychology General aspects Genes Genome Genomes Matching Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) RNA Interference RNA, Untranslated - chemistry Searching Silencers Software Tasks
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