Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis
Biological nitrogen fixation is catalyzed by nitrogenase, a complex metalloenzyme composed of two separately purifiable component proteins encoded by the structural genes nifH, nifD, and nifK. Deletion of the Azotobacter vinelandii nifS gene lowers the activities of both nitrogenase component protei...
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Veröffentlicht in: | Proceedings of the National Academy of Sciences - PNAS 1993-04, Vol.90 (7), p.2754-2758 |
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description | Biological nitrogen fixation is catalyzed by nitrogenase, a complex metalloenzyme composed of two separately purifiable component proteins encoded by the structural genes nifH, nifD, and nifK. Deletion of the Azotobacter vinelandii nifS gene lowers the activities of both nitrogenase component proteins. Because both nitrogenase component proteins have metallocluster prosthetic groups that are composed of iron- and sulfur-containing cores, this result indicated that the nifS gene product could be involved in the mobilization of the iron or sulfur required for metallocluster formation. In the present work, it is shown that NIFS is a pyridoxal phosphate-containing homodimer that catalyzes the formation of L-alanine and elemental sulfur by using L-cysteine as substrate. NIFS activity is extremely sensitive to thiol-specific alkylating reagents, which indicates the participation of a cysteinyl thiolate at the active site. Based on these results we propose that an enzyme-bound cysteinyl persulfide that requires the release of the sulfur from the substrate L-cysteine for its formation ultimately provides the inorganic sulfide required for nitrogenase metallocluster formation. The recent discovery of nifS-like genes in non-nitrogen-fixing organisms also raises the possibility that the reaction catalyzed by NIFS represents a universal mechanism that involves pyridoxal phosphate chemistry, in the mobilization of the sulfur required for metallocluster formation. |
doi_str_mv | 10.1073/pnas.90.7.2754 |
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(Virginia Polytechnic Institute and State University, Blacksburg, VA) ; White, R.H ; Cash, V.L ; Jack, R.F ; Dean, D.R</creator><creatorcontrib>Zheng, L. (Virginia Polytechnic Institute and State University, Blacksburg, VA) ; White, R.H ; Cash, V.L ; Jack, R.F ; Dean, D.R</creatorcontrib><description>Biological nitrogen fixation is catalyzed by nitrogenase, a complex metalloenzyme composed of two separately purifiable component proteins encoded by the structural genes nifH, nifD, and nifK. Deletion of the Azotobacter vinelandii nifS gene lowers the activities of both nitrogenase component proteins. Because both nitrogenase component proteins have metallocluster prosthetic groups that are composed of iron- and sulfur-containing cores, this result indicated that the nifS gene product could be involved in the mobilization of the iron or sulfur required for metallocluster formation. In the present work, it is shown that NIFS is a pyridoxal phosphate-containing homodimer that catalyzes the formation of L-alanine and elemental sulfur by using L-cysteine as substrate. NIFS activity is extremely sensitive to thiol-specific alkylating reagents, which indicates the participation of a cysteinyl thiolate at the active site. Based on these results we propose that an enzyme-bound cysteinyl persulfide that requires the release of the sulfur from the substrate L-cysteine for its formation ultimately provides the inorganic sulfide required for nitrogenase metallocluster formation. The recent discovery of nifS-like genes in non-nitrogen-fixing organisms also raises the possibility that the reaction catalyzed by NIFS represents a universal mechanism that involves pyridoxal phosphate chemistry, in the mobilization of the sulfur required for metallocluster formation.</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.90.7.2754</identifier><identifier>PMID: 8464885</identifier><identifier>CODEN: PNASA6</identifier><language>eng</language><publisher>Washington, DC: National Academy of Sciences of the United States of America</publisher><subject>ACTIVIDAD ENZIMATICA ; ACTIVITE ENZYMATIQUE ; Amino Acid Sequence ; Analytical, structural and metabolic biochemistry ; AZOTOBACTER VINELANDII ; Azotobacter vinelandii - enzymology ; Azotobacter vinelandii - genetics ; Bacteria ; BACTERIA FIJADORA DEL NITROGENO ; Bacterial Proteins - genetics ; Bacterial Proteins - isolation & purification ; Bacterial Proteins - metabolism ; BACTERIE FIXATRICE DE L'AZOTE ; Biochemistry ; Biological and medical sciences ; BIOSINTESIS ; BIOSYNTHESE ; Carbon-Sulfur Lyases ; Chromatography, Ion Exchange ; Cloning, Molecular ; Cysteine - metabolism ; DNA, Bacterial - genetics ; DNA, Bacterial - isolation & purification ; Enzymes ; Enzymes and enzyme inhibitors ; Escherichia coli - genetics ; Ethylmaleimide - pharmacology ; FLORA DEL SUELO ; FLORE DU SOL ; Fundamental and applied biological sciences. Psychology ; Genes ; Genes, Bacterial ; Hydrogen ; Iron ; Kinetics ; Lyases - metabolism ; METALLOPROTEINE ; METALPROTEINAS ; Miscellaneous ; Molecular Sequence Data ; Molecular Weight ; Multigene Family ; Nitrogen Fixation - genetics ; Phosphates ; Proteins ; Sequence Homology, Amino Acid ; Spectrophotometry ; Sulfates ; Sulfides ; Sulfur</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 1993-04, Vol.90 (7), p.2754-2758</ispartof><rights>Copyright 1993 The National Academy of Sciences of the United States of America</rights><rights>1993 INIST-CNRS</rights><rights>Copyright National Academy of Sciences Apr 1, 1993</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c629t-257088d6bc3bd8221ee9cad3cc50a8afe8f8df71f0d5afc3c625a89159496dff3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.pnas.org/content/90/7.cover.gif</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/2361616$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/2361616$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,723,776,780,799,881,27901,27902,53766,53768,57992,58225</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=4737158$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/8464885$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zheng, L. (Virginia Polytechnic Institute and State University, Blacksburg, VA)</creatorcontrib><creatorcontrib>White, R.H</creatorcontrib><creatorcontrib>Cash, V.L</creatorcontrib><creatorcontrib>Jack, R.F</creatorcontrib><creatorcontrib>Dean, D.R</creatorcontrib><title>Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>Biological nitrogen fixation is catalyzed by nitrogenase, a complex metalloenzyme composed of two separately purifiable component proteins encoded by the structural genes nifH, nifD, and nifK. Deletion of the Azotobacter vinelandii nifS gene lowers the activities of both nitrogenase component proteins. Because both nitrogenase component proteins have metallocluster prosthetic groups that are composed of iron- and sulfur-containing cores, this result indicated that the nifS gene product could be involved in the mobilization of the iron or sulfur required for metallocluster formation. In the present work, it is shown that NIFS is a pyridoxal phosphate-containing homodimer that catalyzes the formation of L-alanine and elemental sulfur by using L-cysteine as substrate. NIFS activity is extremely sensitive to thiol-specific alkylating reagents, which indicates the participation of a cysteinyl thiolate at the active site. Based on these results we propose that an enzyme-bound cysteinyl persulfide that requires the release of the sulfur from the substrate L-cysteine for its formation ultimately provides the inorganic sulfide required for nitrogenase metallocluster formation. The recent discovery of nifS-like genes in non-nitrogen-fixing organisms also raises the possibility that the reaction catalyzed by NIFS represents a universal mechanism that involves pyridoxal phosphate chemistry, in the mobilization of the sulfur required for metallocluster formation.</description><subject>ACTIVIDAD ENZIMATICA</subject><subject>ACTIVITE ENZYMATIQUE</subject><subject>Amino Acid Sequence</subject><subject>Analytical, structural and metabolic biochemistry</subject><subject>AZOTOBACTER VINELANDII</subject><subject>Azotobacter vinelandii - enzymology</subject><subject>Azotobacter vinelandii - genetics</subject><subject>Bacteria</subject><subject>BACTERIA FIJADORA DEL NITROGENO</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - isolation & purification</subject><subject>Bacterial Proteins - metabolism</subject><subject>BACTERIE FIXATRICE DE L'AZOTE</subject><subject>Biochemistry</subject><subject>Biological and medical sciences</subject><subject>BIOSINTESIS</subject><subject>BIOSYNTHESE</subject><subject>Carbon-Sulfur Lyases</subject><subject>Chromatography, Ion Exchange</subject><subject>Cloning, Molecular</subject><subject>Cysteine - metabolism</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Bacterial - isolation & purification</subject><subject>Enzymes</subject><subject>Enzymes and enzyme inhibitors</subject><subject>Escherichia coli - genetics</subject><subject>Ethylmaleimide - pharmacology</subject><subject>FLORA DEL SUELO</subject><subject>FLORE DU SOL</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes</subject><subject>Genes, Bacterial</subject><subject>Hydrogen</subject><subject>Iron</subject><subject>Kinetics</subject><subject>Lyases - metabolism</subject><subject>METALLOPROTEINE</subject><subject>METALPROTEINAS</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Molecular Weight</subject><subject>Multigene Family</subject><subject>Nitrogen Fixation - genetics</subject><subject>Phosphates</subject><subject>Proteins</subject><subject>Sequence Homology, Amino Acid</subject><subject>Spectrophotometry</subject><subject>Sulfates</subject><subject>Sulfides</subject><subject>Sulfur</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1993</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1vEzEUxFcIVNLClQMCaYVQbwm2158SFxRRqFTBoZSr9eK1W0fOOrW9Ffnv6yghChxAPvgwvxm_52maVxjNMBLdh_UAeabQTMyIYPRJM8FI4SmnCj1tJggRMZWU0OfNac5LhJBiEp00J5JyKiWbND_nm1ysH2zb2zwGNybItgVT_IMvm9YPvTdQbG6hTTHY1sXUfru8uK5Ku7IFQogmjDUitQsf82Yodzb7_KJ55iBk-3J_nzU3F59_zL9Or75_uZx_upoaTlSZEiaQlD1fmG7RS0KwtcpA3xnDEEhwVjrZO4Ed6hk401UXA6kwU1Tx3rnurPm4y12Pi5XtjR1KgqDXya8gbXQEr_9UBn-nb-ODphwLWu3ne3uK96PNRa98NjYEGGwcsxaMc9ZJ-V8Qc6Zw3aWC7_4Cl3FMQ_0DTRAmnHPVVWi2g0yKOSfrDgNjpLet6m2rWiEt9LbVanh7vOYB39dY9fd7HbKB4BIMxucDRkUnMJNHMdv43-rxM-f_0rUbQyj2V6ngmx24zCWmA0k6juup8uud7CBquE11lJtrRTFGnHSPPdvWHw</recordid><startdate>19930401</startdate><enddate>19930401</enddate><creator>Zheng, L. (Virginia Polytechnic Institute and State University, Blacksburg, VA)</creator><creator>White, R.H</creator><creator>Cash, V.L</creator><creator>Jack, R.F</creator><creator>Dean, D.R</creator><general>National Academy of Sciences of the United States of America</general><general>National Acad Sciences</general><general>National Academy of Sciences</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19930401</creationdate><title>Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis</title><author>Zheng, L. (Virginia Polytechnic Institute and State University, Blacksburg, VA) ; White, R.H ; Cash, V.L ; Jack, R.F ; Dean, D.R</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c629t-257088d6bc3bd8221ee9cad3cc50a8afe8f8df71f0d5afc3c625a89159496dff3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1993</creationdate><topic>ACTIVIDAD ENZIMATICA</topic><topic>ACTIVITE ENZYMATIQUE</topic><topic>Amino Acid Sequence</topic><topic>Analytical, structural and metabolic biochemistry</topic><topic>AZOTOBACTER VINELANDII</topic><topic>Azotobacter vinelandii - enzymology</topic><topic>Azotobacter vinelandii - genetics</topic><topic>Bacteria</topic><topic>BACTERIA FIJADORA DEL NITROGENO</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Proteins - isolation & purification</topic><topic>Bacterial Proteins - metabolism</topic><topic>BACTERIE FIXATRICE DE L'AZOTE</topic><topic>Biochemistry</topic><topic>Biological and medical sciences</topic><topic>BIOSINTESIS</topic><topic>BIOSYNTHESE</topic><topic>Carbon-Sulfur Lyases</topic><topic>Chromatography, Ion Exchange</topic><topic>Cloning, Molecular</topic><topic>Cysteine - metabolism</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Bacterial - isolation & purification</topic><topic>Enzymes</topic><topic>Enzymes and enzyme inhibitors</topic><topic>Escherichia coli - genetics</topic><topic>Ethylmaleimide - pharmacology</topic><topic>FLORA DEL SUELO</topic><topic>FLORE DU SOL</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes</topic><topic>Genes, Bacterial</topic><topic>Hydrogen</topic><topic>Iron</topic><topic>Kinetics</topic><topic>Lyases - metabolism</topic><topic>METALLOPROTEINE</topic><topic>METALPROTEINAS</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Molecular Weight</topic><topic>Multigene Family</topic><topic>Nitrogen Fixation - genetics</topic><topic>Phosphates</topic><topic>Proteins</topic><topic>Sequence Homology, Amino Acid</topic><topic>Spectrophotometry</topic><topic>Sulfates</topic><topic>Sulfides</topic><topic>Sulfur</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zheng, L. (Virginia Polytechnic Institute and State University, Blacksburg, VA)</creatorcontrib><creatorcontrib>White, R.H</creatorcontrib><creatorcontrib>Cash, V.L</creatorcontrib><creatorcontrib>Jack, R.F</creatorcontrib><creatorcontrib>Dean, D.R</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zheng, L. (Virginia Polytechnic Institute and State University, Blacksburg, VA)</au><au>White, R.H</au><au>Cash, V.L</au><au>Jack, R.F</au><au>Dean, D.R</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>1993-04-01</date><risdate>1993</risdate><volume>90</volume><issue>7</issue><spage>2754</spage><epage>2758</epage><pages>2754-2758</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><coden>PNASA6</coden><abstract>Biological nitrogen fixation is catalyzed by nitrogenase, a complex metalloenzyme composed of two separately purifiable component proteins encoded by the structural genes nifH, nifD, and nifK. Deletion of the Azotobacter vinelandii nifS gene lowers the activities of both nitrogenase component proteins. Because both nitrogenase component proteins have metallocluster prosthetic groups that are composed of iron- and sulfur-containing cores, this result indicated that the nifS gene product could be involved in the mobilization of the iron or sulfur required for metallocluster formation. In the present work, it is shown that NIFS is a pyridoxal phosphate-containing homodimer that catalyzes the formation of L-alanine and elemental sulfur by using L-cysteine as substrate. NIFS activity is extremely sensitive to thiol-specific alkylating reagents, which indicates the participation of a cysteinyl thiolate at the active site. Based on these results we propose that an enzyme-bound cysteinyl persulfide that requires the release of the sulfur from the substrate L-cysteine for its formation ultimately provides the inorganic sulfide required for nitrogenase metallocluster formation. The recent discovery of nifS-like genes in non-nitrogen-fixing organisms also raises the possibility that the reaction catalyzed by NIFS represents a universal mechanism that involves pyridoxal phosphate chemistry, in the mobilization of the sulfur required for metallocluster formation.</abstract><cop>Washington, DC</cop><pub>National Academy of Sciences of the United States of America</pub><pmid>8464885</pmid><doi>10.1073/pnas.90.7.2754</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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subjects | ACTIVIDAD ENZIMATICA ACTIVITE ENZYMATIQUE Amino Acid Sequence Analytical, structural and metabolic biochemistry AZOTOBACTER VINELANDII Azotobacter vinelandii - enzymology Azotobacter vinelandii - genetics Bacteria BACTERIA FIJADORA DEL NITROGENO Bacterial Proteins - genetics Bacterial Proteins - isolation & purification Bacterial Proteins - metabolism BACTERIE FIXATRICE DE L'AZOTE Biochemistry Biological and medical sciences BIOSINTESIS BIOSYNTHESE Carbon-Sulfur Lyases Chromatography, Ion Exchange Cloning, Molecular Cysteine - metabolism DNA, Bacterial - genetics DNA, Bacterial - isolation & purification Enzymes Enzymes and enzyme inhibitors Escherichia coli - genetics Ethylmaleimide - pharmacology FLORA DEL SUELO FLORE DU SOL Fundamental and applied biological sciences. Psychology Genes Genes, Bacterial Hydrogen Iron Kinetics Lyases - metabolism METALLOPROTEINE METALPROTEINAS Miscellaneous Molecular Sequence Data Molecular Weight Multigene Family Nitrogen Fixation - genetics Phosphates Proteins Sequence Homology, Amino Acid Spectrophotometry Sulfates Sulfides Sulfur |
title | Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis |
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